RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 SLC20A2Q08357 652 aa12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 ZNF527Q8NB42 609 aa12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 CEP295NLQ96MC4 621 aa12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 DKK3Q9UBP4 350 aa12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 FBXO9Q9UK97 447 aaPredicted RBP12.64□□□□□ -0.39
CCDC88C-204ENST00000389857 CAPN14A8MX76 684 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 MID1O15344 667 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 PDPK1O15530 556 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 OR1I1O60431 355 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 B4GALT4O60513 344 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 PRAMEF12O95522 483 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 RB1P06400 928 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 ZNF20P17024 532 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 CYP3A5P20815 502 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 FOXR2Q6PJQ5 311 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 LCLAT1Q6UWP7 414 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 OTOP3Q7RTS5 596 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 OR10H4Q8NGA5 316 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 NXNL1Q96CM4 212 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 B3GALT6Q96L58 329 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 DHRS1Q96LJ7 313 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 TTYH1Q9H313 450 aaPredicted RBP12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 FAM83DQ9H4H8 585 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 NMUR1Q9HB89 426 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 ZFP37Q9Y6Q3 630 aaPredicted RBP12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 ORC5O43913 435 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 PGAM2P15259 253 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 TAS2R50P59544 299 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 LCP2Q13094 533 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 AHSA2Q719I0 299 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 FBXO15Q8NCQ5 510 aaPredicted RBP12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 ZMIZ2Q8NF64 920 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 OR52J3Q8NH60 311 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 SLC39A3Q9BRY0 314 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 SRMSQ9H3Y6 488 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 PRAMEF33A0A0G2JMD5 474 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 CPSF4LA6NMK7 179 aaKnown RBP12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 NT5C1B-RDH14C9J2C7 533 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 IRF6O14896 467 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 INSIG1O15503 277 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 PRAMEF10O60809 474 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 BRCC3P46736 316 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 RPS9P46781 194 aaKnown RBP12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 LINGO2Q7L985 606 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 SLITRK4Q8IW52 837 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 DNAJB8Q8NHS0 232 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 SMG7Q92540 1137 aaKnown RBP12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 LRRC4CQ9HCJ2 640 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 ZNF224Q9NZL3 707 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 B4GALT5O43286 388 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 TPD52L2O43399 206 aaKnown RBP12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 C2P06681 752 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 NOGQ13253 232 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 ZNF234Q14588 700 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 PLEKHG4Q58EX7 1191 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 C6orf52Q5T4I8 152 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 LPCAT4Q643R3 524 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 USP43Q70EL4 1123 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 TMEM17Q86X19 198 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 PNLDC1Q8NA58 520 aaKnown RBP12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 UPF1Q92900 1129 aaKnown RBP eCLIP12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 ZSWIM3Q96MP5 696 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 STOX2Q9P2F5 926 aaPredicted RBP12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 TCAF1Q9Y4C2 921 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 E7ENX8 843 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 ALPPP05187 535 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 TXNL4AP83876 142 aaKnown RBP12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 UBAP2Q5T6F2 1119 aaKnown RBP12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 LRRC55Q6ZSA7 311 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 FRMD7Q6ZUT3 714 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 USP30Q70CQ3 517 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 C1orf216Q8TAB5 229 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 ART5Q96L15 291 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 CIB1Q99828 191 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 CD84Q9UIB8 345 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 FZD1Q9UP38 647 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 PRORSD1PA6NEY8 169 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 AIREO43918 545 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 ADRA1BP35368 520 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 BLKP51451 505 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 SLC5A3P53794 718 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 SIM2Q14190 667 aaPredicted RBP12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 PUM1Q14671 1186 aaKnown RBP eCLIP12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 RGMBQ6NW40 437 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 COQ8BQ96D53 544 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 DNAJC19Q96DA6 116 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 NXPE2Q96DL1 559 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 ZBED6CLQ96FA7 236 aaPredicted RBP12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 CITED4Q96RK1 184 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 ARL8BQ9NVJ2 186 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 MED11Q9P086 117 aa12.63□□□□□ -0.39
CCDC88C-204ENST00000389857 HSD17B2P37059 387 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 HSPA7P48741 367 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 SLC24A5Q71RS6 500 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 UTS2BQ765I0 119 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 ABHD13Q7L211 337 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 P2RY8Q86VZ1 359 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 ZFPM1Q8IX07 1006 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 ATAD1Q8NBU5 361 aa12.62□□□□□ -0.39
CCDC88C-204ENST00000389857 TTLQ8NG68 377 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms