RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 H7C0S8 307 aa10.05□□□□□ -0.8
VPS53-202ENST00000389040 ARHGAP33O14559 1287 aa10.05□□□□□ -0.8
VPS53-202ENST00000389040 GSC2O15499 205 aa10.05□□□□□ -0.8
VPS53-202ENST00000389040 CER1O95813 267 aa10.05□□□□□ -0.8
VPS53-202ENST00000389040 ENO1P06733 434 aaKnown RBP10.05□□□□□ -0.8
VPS53-202ENST00000389040 C1SP09871 688 aa10.05□□□□□ -0.8
VPS53-202ENST00000389040 ZNF883P0CG24 379 aa10.05□□□□□ -0.8
VPS53-202ENST00000389040 GM2AP17900 193 aa10.05□□□□□ -0.8
VPS53-202ENST00000389040 BLKP51451 505 aa10.05□□□□□ -0.8
VPS53-202ENST00000389040 KPNA2P52292 529 aaKnown RBP10.05□□□□□ -0.8
VPS53-202ENST00000389040 PRAMEP78395 509 aa10.05□□□□□ -0.8
VPS53-202ENST00000389040 UBAP2LQ14157 1087 aaKnown RBP10.05□□□□□ -0.8
VPS53-202ENST00000389040 RCN2Q14257 317 aa10.05□□□□□ -0.8
VPS53-202ENST00000389040 INPP5AQ14642 412 aa10.05□□□□□ -0.8
VPS53-202ENST00000389040 LPAL2Q16609 132 aa10.05□□□□□ -0.8
VPS53-202ENST00000389040 RBM20Q5T481 1227 aaKnown RBP10.05□□□□□ -0.8
VPS53-202ENST00000389040 GCNT7Q6ZNI0 430 aa10.05□□□□□ -0.8
VPS53-202ENST00000389040 Q6ZSR6 202 aa10.05□□□□□ -0.8
VPS53-202ENST00000389040 SDR16C5Q8N3Y7 309 aa10.05□□□□□ -0.8
VPS53-202ENST00000389040 TEX9Q8N6V9 391 aa10.05□□□□□ -0.8
VPS53-202ENST00000389040 OR6P1Q8NGX9 317 aa10.05□□□□□ -0.8
VPS53-202ENST00000389040 AGAP11Q8TF27 550 aa10.05□□□□□ -0.8
VPS53-202ENST00000389040 NXNL1Q96CM4 212 aa10.05□□□□□ -0.8
VPS53-202ENST00000389040 EID2BQ96D98 161 aa10.05□□□□□ -0.8
VPS53-202ENST00000389040 SLC6A18Q96N87 628 aa10.05□□□□□ -0.8
VPS53-202ENST00000389040 VPS35Q96QK1 796 aa10.05□□□□□ -0.8
VPS53-202ENST00000389040 NDNQ99608 321 aa10.05□□□□□ -0.8
VPS53-202ENST00000389040 TEX101Q9BY14 249 aa10.05□□□□□ -0.8
VPS53-202ENST00000389040 DRC3Q9H069 523 aa10.05□□□□□ -0.8
VPS53-202ENST00000389040 MRPL46Q9H2W6 279 aaKnown RBP10.05□□□□□ -0.8
VPS53-202ENST00000389040 XPR1Q9UBH6 696 aa10.05□□□□□ -0.8
VPS53-202ENST00000389040 TAGLN3Q9UI15 199 aa10.05□□□□□ -0.8
VPS53-202ENST00000389040 SPO11Q9Y5K1 396 aa10.05□□□□□ -0.8
VPS53-202ENST00000389040 SPTY2D1-AS1A0A0U1RR47 76 aa10.04□□□□□ -0.8
VPS53-202ENST00000389040 CACNB4O00305 520 aaPredicted RBP10.04□□□□□ -0.8
VPS53-202ENST00000389040 CCL22O00626 93 aa10.04□□□□□ -0.8
VPS53-202ENST00000389040 DIAPH2O60879 1101 aa10.04□□□□□ -0.8
VPS53-202ENST00000389040 THEGLP0DJG4 465 aa10.04□□□□□ -0.8
VPS53-202ENST00000389040 SPAM1P38567 509 aa10.04□□□□□ -0.8
VPS53-202ENST00000389040 CTSKP43235 329 aa10.04□□□□□ -0.8
VPS53-202ENST00000389040 GPR1P46091 355 aa10.04□□□□□ -0.8
VPS53-202ENST00000389040 RXRGP48443 463 aa10.04□□□□□ -0.8
VPS53-202ENST00000389040 ARRB1P49407 418 aaPredicted RBP10.04□□□□□ -0.8
VPS53-202ENST00000389040 CSNK1EP49674 416 aaKnown RBP10.04□□□□□ -0.8
VPS53-202ENST00000389040 ARSDP51689 593 aa10.04□□□□□ -0.8
VPS53-202ENST00000389040 THOP1P52888 689 aa10.04□□□□□ -0.8
VPS53-202ENST00000389040 NXPH1P58417 271 aa10.04□□□□□ -0.8
VPS53-202ENST00000389040 KIAA1024LP59773 190 aa10.04□□□□□ -0.8
VPS53-202ENST00000389040 ARHGAP8P85298 464 aa10.04□□□□□ -0.8
VPS53-202ENST00000389040 ACVR1Q04771 509 aa10.04□□□□□ -0.8
VPS53-202ENST00000389040 DLG1Q12959 904 aa10.04□□□□□ -0.8
VPS53-202ENST00000389040 SLC14A1Q13336 389 aa10.04□□□□□ -0.8
VPS53-202ENST00000389040 IRF4Q15306 451 aa10.04□□□□□ -0.8
VPS53-202ENST00000389040 GPR33Q49SQ1 333 aa10.04□□□□□ -0.8
VPS53-202ENST00000389040 ZNF789Q5FWF6 425 aa10.04□□□□□ -0.8
VPS53-202ENST00000389040 CFAP157Q5JU67 520 aa10.04□□□□□ -0.8
VPS53-202ENST00000389040 WASHC2DQ5SRD0 308 aa10.04□□□□□ -0.8
VPS53-202ENST00000389040 VWA5B1Q5TIE3 1220 aa10.04□□□□□ -0.8
VPS53-202ENST00000389040 ICE2Q659A1 982 aa10.04□□□□□ -0.8
VPS53-202ENST00000389040 PTAR1Q7Z6K3 402 aaPredicted RBP10.04□□□□□ -0.8
VPS53-202ENST00000389040 SPATA6LQ8N4H0 392 aa10.04□□□□□ -0.8
VPS53-202ENST00000389040 HEXDCQ8WVB3 486 aa10.04□□□□□ -0.8
VPS53-202ENST00000389040 BTN2A2Q8WVV5 523 aa10.04□□□□□ -0.8
VPS53-202ENST00000389040 HDAC10Q969S8 669 aa10.04□□□□□ -0.8
VPS53-202ENST00000389040 MCUR1Q96AQ8 359 aa10.04□□□□□ -0.8
VPS53-202ENST00000389040 TSPAN17Q96FV3 270 aa10.04□□□□□ -0.8
VPS53-202ENST00000389040 OLFM1Q99784 485 aa10.04□□□□□ -0.8
VPS53-202ENST00000389040 MRPL57Q9BQC6 102 aaKnown RBP10.04□□□□□ -0.8
VPS53-202ENST00000389040 APOOQ9BUR5 198 aa10.04□□□□□ -0.8
VPS53-202ENST00000389040 ILKAPQ9H0C8 392 aaPredicted RBP10.04□□□□□ -0.8
VPS53-202ENST00000389040 ABCG8Q9H221 673 aa10.04□□□□□ -0.8
VPS53-202ENST00000389040 WDR26Q9H7D7 661 aa10.04□□□□□ -0.8
VPS53-202ENST00000389040 COG4Q9H9E3 785 aa10.04□□□□□ -0.8
VPS53-202ENST00000389040 PHPT1Q9NRX4 125 aaPredicted RBP10.04□□□□□ -0.8
VPS53-202ENST00000389040 NLE1Q9NVX2 485 aaPredicted RBP10.04□□□□□ -0.8
VPS53-202ENST00000389040 TAS2R1Q9NYW7 299 aa10.04□□□□□ -0.8
VPS53-202ENST00000389040 KCTD3Q9Y597 815 aa10.04□□□□□ -0.8
VPS53-202ENST00000389040 ARL5AQ9Y689 179 aa10.04□□□□□ -0.8
VPS53-202ENST00000389040 POM121BA6NF01 834 aa10.03□□□□□ -0.8
VPS53-202ENST00000389040 B2RBV5 119 aa10.03□□□□□ -0.8
VPS53-202ENST00000389040 RAD51BO15315 384 aa10.03□□□□□ -0.8
VPS53-202ENST00000389040 DLX3O60479 287 aa10.03□□□□□ -0.8
VPS53-202ENST00000389040 CFIP05156 583 aa10.03□□□□□ -0.8
VPS53-202ENST00000389040 MYCLP1P12525 358 aaPredicted RBP10.03□□□□□ -0.8
VPS53-202ENST00000389040 BPIP17213 487 aa10.03□□□□□ -0.8
VPS53-202ENST00000389040 SDHBP21912 280 aa10.03□□□□□ -0.8
VPS53-202ENST00000389040 TGM1P22735 817 aa10.03□□□□□ -0.8
VPS53-202ENST00000389040 IGFALSP35858 605 aa10.03□□□□□ -0.8
VPS53-202ENST00000389040 CPA2P48052 419 aa10.03□□□□□ -0.8
VPS53-202ENST00000389040 HK2P52789 917 aa10.03□□□□□ -0.8
VPS53-202ENST00000389040 ATXN3P54252 364 aaPredicted RBP10.03□□□□□ -0.8
VPS53-202ENST00000389040 ASPHQ12797 758 aa10.03□□□□□ -0.8
VPS53-202ENST00000389040 NFATC4Q14934 902 aa10.03□□□□□ -0.8
VPS53-202ENST00000389040 FAM83EQ2M2I3 478 aa10.03□□□□□ -0.8
VPS53-202ENST00000389040 HECTD2Q5U5R9 776 aa10.03□□□□□ -0.8
VPS53-202ENST00000389040 EPGNQ6UW88 154 aa10.03□□□□□ -0.8
VPS53-202ENST00000389040 MACC1Q6ZN28 852 aa10.03□□□□□ -0.8
VPS53-202ENST00000389040 SCG3Q8WXD2 468 aaKnown RBP10.03□□□□□ -0.8
VPS53-202ENST00000389040 KLK6Q92876 244 aa10.03□□□□□ -0.8
VPS53-202ENST00000389040 FAM122AQ96E09 287 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms