RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 ZC3HC1Q86WB0 502 aaKnown RBP6.33□□□□□ -1.4
VPS35-201ENST00000299138 DNAAF5Q86Y56 855 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 GLIS1Q8NBF1 620 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 ITFG1Q8TB96 612 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 STAG3L4Q8TBR4 150 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 PPP3R2Q96LZ3 170 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 CAMKK2Q96RR4 588 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 VPS25Q9BRG1 176 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 PTTG3PQ9NZH4 202 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 CORO2BQ9UQ03 480 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 MGAT4DA6NG13 374 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 SMAD9O15198 467 aaKnown RBP6.33□□□□□ -1.4
VPS35-201ENST00000299138 CA12O43570 354 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 DNTTP04053 509 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 MBL2P11226 248 aaPredicted RBP6.33□□□□□ -1.4
VPS35-201ENST00000299138 PSKH1P11801 424 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 XRCC1P18887 633 aaPredicted RBP6.33□□□□□ -1.4
VPS35-201ENST00000299138 IMPDH1P20839 514 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 ADORA2BP29275 332 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 HALP42357 657 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 FAM189A2Q15884 450 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 HIST2H2ACQ16777 129 aaPredicted RBP6.33□□□□□ -1.4
VPS35-201ENST00000299138 ARL13AQ5H913 290 aaPredicted RBP6.33□□□□□ -1.4
VPS35-201ENST00000299138 KRBOX4Q5JUW0 171 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 AGAP7PQ5VUJ5 663 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 HIST2H2AA3Q6FI13 130 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 ETFRF1Q6IPR1 90 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 GDPGP1Q6ZNW5 385 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 DCDC5Q6ZRR9 648 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 FAM220AQ7Z4H9 259 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 STK40Q8N2I9 435 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 OR2L5Q8NG80 312 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 JOSD2Q8TAC2 188 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 PHF10Q8WUB8 498 aaKnown RBP6.33□□□□□ -1.4
VPS35-201ENST00000299138 DCPSQ96C86 337 aaKnown RBP6.33□□□□□ -1.4
VPS35-201ENST00000299138 EBF4Q9BQW3 602 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 OXCT2Q9BYC2 517 aaPredicted RBP6.33□□□□□ -1.4
VPS35-201ENST00000299138 EXO5Q9H790 373 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 IKZF3Q9UKT9 509 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 E7ENX8 843 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 MPZL2O60487 215 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 FADS2O95864 444 aaKnown RBP6.33□□□□□ -1.4
VPS35-201ENST00000299138 MGAT1P26572 445 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 RENBPP51606 427 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 OR2B6P58173 313 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 RAPSNQ13702 412 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 CDHR3Q6ZTQ4 885 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 CFAP206Q8IYR0 622 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 DEPDC4Q8N2C3 294 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 SMG8Q8ND04 991 aaKnown RBP6.33□□□□□ -1.4
VPS35-201ENST00000299138 OR5B17Q8NGF7 314 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 OR56A4Q8NGH8 313 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 COQ8AQ8NI60 647 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 PPP1R13LQ8WUF5 828 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 ZNF516Q92618 1163 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 LRRC3Q9BY71 257 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 TFB2MQ9H5Q4 396 aaKnown RBP6.33□□□□□ -1.4
VPS35-201ENST00000299138 FAM49BQ9NUQ9 324 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 SLC39A1Q9NY26 324 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 PRKAG2Q9UGJ0 569 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 GNG8Q9UK08 70 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 RAB23Q9ULC3 237 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 GMPPBQ9Y5P6 360 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 SPTLC1O15269 473 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 CSN2P05814 226 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 ZNF35P13682 527 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 CPB1P15086 417 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 LHX1P48742 406 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 FNTBP49356 437 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 LUMP51884 338 aaPredicted RBP6.33□□□□□ -1.4
VPS35-201ENST00000299138 BACE1P56817 501 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 OGDHQ02218 1023 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 PLEKHG6Q3KR16 790 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 C3orf33Q6P1S2 294 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 FAM171BQ6P995 826 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 ATPAF2Q8N5M1 289 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 OR8J3Q8NGG0 315 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 FBXO30Q8TB52 745 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 ATL1Q8WXF7 558 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 P2RY11Q96G91 374 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 DIRAS2Q96HU8 199 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 HERC2P3Q9BVR0 1158 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 ZNF700Q9H0M5 742 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 XYLT2Q9H1B5 865 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 ZNF385DQ9H6B1 395 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 TRIM36Q9NQ86 728 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 AGPAT4Q9NRZ5 378 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 ABCD2Q9UBJ2 740 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 FBXO5Q9UKT4 447 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 IFT52Q9Y366 437 aa6.33□□□□□ -1.4
VPS35-201ENST00000299138 MRPS23Q9Y3D9 190 aaKnown RBP6.33□□□□□ -1.4
VPS35-201ENST00000299138 ZNF705EA8MWA4 302 aaPredicted RBP6.32□□□□□ -1.4
VPS35-201ENST00000299138 AZIN1O14977 448 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 EPOP01588 193 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 ITGB1P05556 798 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 SLC10A7Q0GE19 358 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 RALGPS1Q5JS13 557 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 FSTL4Q6MZW2 842 aa6.32□□□□□ -1.4
VPS35-201ENST00000299138 DDX53Q86TM3 631 aaKnown RBP6.32□□□□□ -1.4
VPS35-201ENST00000299138 BSNDQ8WZ55 320 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms