RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 KIAA1324Q6UXG2 1013 aaKnown RBP13.85□□□□□ -0.19
SS18-201ENST00000269137 HEATR4Q86WZ0 1026 aa13.85□□□□□ -0.19
SS18-201ENST00000269137 RASGRP3Q8IV61 690 aa13.85□□□□□ -0.19
SS18-201ENST00000269137 PDPRQ8NCN5 879 aa13.85□□□□□ -0.19
SS18-201ENST00000269137 STON2Q8WXE9 905 aa13.85□□□□□ -0.19
SS18-201ENST00000269137 DLG3Q92796 817 aa13.85□□□□□ -0.19
SS18-201ENST00000269137 GLMNQ92990 594 aa13.85□□□□□ -0.19
SS18-201ENST00000269137 SLC12A9Q9BXP2 914 aa13.85□□□□□ -0.19
SS18-201ENST00000269137 WWP1Q9H0M0 922 aa13.85□□□□□ -0.19
SS18-201ENST00000269137 MBNL1Q9NR56 388 aaKnown RBP13.85□□□□□ -0.19
SS18-201ENST00000269137 ABCF3Q9NUQ8 709 aa13.85□□□□□ -0.19
SS18-201ENST00000269137 DNAJC28Q9NX36 388 aa13.85□□□□□ -0.19
SS18-201ENST00000269137 VTI1BQ9UEU0 232 aa13.85□□□□□ -0.19
SS18-201ENST00000269137 ZDHHC2Q9UIJ5 367 aa13.85□□□□□ -0.19
SS18-201ENST00000269137 ADAMTS6Q9UKP5 1117 aa13.85□□□□□ -0.19
SS18-201ENST00000269137 CA14Q9ULX7 337 aa13.85□□□□□ -0.19
SS18-201ENST00000269137 TNPO3Q9Y5L0 923 aaKnown RBP13.85□□□□□ -0.19
SS18-201ENST00000269137 TRIOO75962 3097 aa13.85□□□□□ -0.19
SS18-201ENST00000269137 TBC1D3DA0A087WVF3 549 aa13.84□□□□□ -0.19
SS18-201ENST00000269137 TBC1D3IA0A087WXS9 549 aa13.84□□□□□ -0.19
SS18-201ENST00000269137 TBC1D3EA0A087X179 549 aa13.84□□□□□ -0.19
SS18-201ENST00000269137 TBC1D3KA0A087X1G2 549 aa13.84□□□□□ -0.19
SS18-201ENST00000269137 C17orf113A0A1B0GUU1 675 aa13.84□□□□□ -0.19
SS18-201ENST00000269137 SLC5A10A0PJK1 596 aa13.84□□□□□ -0.19
SS18-201ENST00000269137 TBC1D3FA6NER0 549 aaPredicted RBP13.84□□□□□ -0.19
SS18-201ENST00000269137 TBC1D3LB9A6J9 549 aa13.84□□□□□ -0.19
SS18-201ENST00000269137 GFYI3L273 518 aa13.84□□□□□ -0.19
SS18-201ENST00000269137 ENO2P09104 434 aaPredicted RBP13.84□□□□□ -0.19
SS18-201ENST00000269137 TBC1D3HP0C7X1 549 aa13.84□□□□□ -0.19
SS18-201ENST00000269137 ZNF8P17098 575 aaPredicted RBP13.84□□□□□ -0.19
SS18-201ENST00000269137 VCLP18206 1134 aa13.84□□□□□ -0.19
SS18-201ENST00000269137 EEF1DP29692 281 aaKnown RBP13.84□□□□□ -0.19
SS18-201ENST00000269137 TPMTP51580 245 aa13.84□□□□□ -0.19
SS18-201ENST00000269137 STARD6P59095 220 aa13.84□□□□□ -0.19
SS18-201ENST00000269137 SP140Q13342 867 aa13.84□□□□□ -0.19
SS18-201ENST00000269137 IRF4Q15306 451 aa13.84□□□□□ -0.19
SS18-201ENST00000269137 TBC1D3GQ6DHY5 549 aa13.84□□□□□ -0.19
SS18-201ENST00000269137 TBC1D3CQ6IPX1 549 aa13.84□□□□□ -0.19
SS18-201ENST00000269137 Q6ZS52 159 aa13.84□□□□□ -0.19
SS18-201ENST00000269137 SYT13Q7L8C5 426 aa13.84□□□□□ -0.19
SS18-201ENST00000269137 MAVSQ7Z434 540 aa13.84□□□□□ -0.19
SS18-201ENST00000269137 VRK3Q8IV63 474 aa13.84□□□□□ -0.19
SS18-201ENST00000269137 TBC1D3Q8IZP1 549 aaPredicted RBP13.84□□□□□ -0.19
SS18-201ENST00000269137 GBP7Q8N8V2 638 aaPredicted RBP13.84□□□□□ -0.19
SS18-201ENST00000269137 SHDQ96IW2 340 aa13.84□□□□□ -0.19
SS18-201ENST00000269137 LRRC37BQ96QE4 947 aa13.84□□□□□ -0.19
SS18-201ENST00000269137 OSBPL6Q9BZF3 934 aa13.84□□□□□ -0.19
SS18-201ENST00000269137 LMAN1LQ9HAT1 526 aa13.84□□□□□ -0.19
SS18-201ENST00000269137 POLMQ9NP87 494 aaPredicted RBP13.84□□□□□ -0.19
SS18-201ENST00000269137 ITM2CQ9NQX7 267 aa13.84□□□□□ -0.19
SS18-201ENST00000269137 TMEM202A6NGA9 273 aa13.83□□□□□ -0.2
SS18-201ENST00000269137 NCF1BA6NI72 391 aaPredicted RBP13.83□□□□□ -0.2
SS18-201ENST00000269137 NCF1CA8MVU1 366 aaPredicted RBP13.83□□□□□ -0.2
SS18-201ENST00000269137 GPR89AB7ZAQ6 455 aa13.83□□□□□ -0.2
SS18-201ENST00000269137 LIN7AO14910 233 aaPredicted RBP13.83□□□□□ -0.2
SS18-201ENST00000269137 CHUKO15111 745 aa13.83□□□□□ -0.2
SS18-201ENST00000269137 HDAC3O15379 428 aa13.83□□□□□ -0.2
SS18-201ENST00000269137 IGLV3-19P01714 112 aa13.83□□□□□ -0.2
SS18-201ENST00000269137 S100BP04271 92 aaPredicted RBP13.83□□□□□ -0.2
SS18-201ENST00000269137 GPR89BP0CG08 455 aa13.83□□□□□ -0.2
SS18-201ENST00000269137 NCF1P14598 390 aaPredicted RBP13.83□□□□□ -0.2
SS18-201ENST00000269137 TARSP26639 723 aaKnown RBP13.83□□□□□ -0.2
SS18-201ENST00000269137 CDKL1Q00532 357 aa13.83□□□□□ -0.2
SS18-201ENST00000269137 INPP5AQ14642 412 aa13.83□□□□□ -0.2
SS18-201ENST00000269137 PCBP2Q15366 365 aaKnown RBP eCLIP13.83□□□□□ -0.29e-6■□□□□ 8.7
SS18-201ENST00000269137 PHKG1Q16816 387 aa13.83□□□□□ -0.2
SS18-201ENST00000269137 METTL2BQ6P1Q9 378 aaKnown RBP13.83□□□□□ -0.2
SS18-201ENST00000269137 EPGNQ6UW88 154 aa13.83□□□□□ -0.2
SS18-201ENST00000269137 CCDC121Q6ZUS5 278 aa13.83□□□□□ -0.2
SS18-201ENST00000269137 CUZD1Q86UP6 607 aa13.83□□□□□ -0.2
SS18-201ENST00000269137 TRAPPC5Q8IUR0 188 aa13.83□□□□□ -0.2
SS18-201ENST00000269137 ZNF547Q8IVP9 402 aa13.83□□□□□ -0.2
SS18-201ENST00000269137 FITM2Q8N6M3 262 aa13.83□□□□□ -0.2
SS18-201ENST00000269137 TMEM159Q96B96 161 aa13.83□□□□□ -0.2
SS18-201ENST00000269137 FAR2Q96K12 515 aa13.83□□□□□ -0.2
SS18-201ENST00000269137 WDR26Q9H7D7 661 aa13.83□□□□□ -0.2
SS18-201ENST00000269137 COG4Q9H9E3 785 aa13.83□□□□□ -0.2
SS18-201ENST00000269137 PARVBQ9HBI1 364 aa13.83□□□□□ -0.2
SS18-201ENST00000269137 SGK2Q9HBY8 427 aa13.83□□□□□ -0.2
SS18-201ENST00000269137 UTP6Q9NYH9 597 aaKnown RBP13.83□□□□□ -0.2
SS18-201ENST00000269137 HEY2Q9UBP5 337 aa13.83□□□□□ -0.2
SS18-201ENST00000269137 GULP1Q9UBP9 304 aa13.83□□□□□ -0.2
SS18-201ENST00000269137 TSR3Q9UJK0 312 aaKnown RBP13.83□□□□□ -0.2
SS18-201ENST00000269137 PTBP2Q9UKA9 531 aaKnown RBP13.83□□□□□ -0.2
SS18-201ENST00000269137 PRR23AA6NEV1 266 aa13.83□□□□□ -0.2
SS18-201ENST00000269137 LRRC14BA6NHZ5 514 aa13.83□□□□□ -0.2
SS18-201ENST00000269137 C19orf67A6NJJ6 358 aa13.83□□□□□ -0.2
SS18-201ENST00000269137 MATN4O95460 622 aa13.83□□□□□ -0.2
SS18-201ENST00000269137 MAPK9P45984 424 aa13.83□□□□□ -0.2
SS18-201ENST00000269137 AGTR2P50052 363 aa13.83□□□□□ -0.2
SS18-201ENST00000269137 IDH3AP50213 366 aa13.83□□□□□ -0.2
SS18-201ENST00000269137 CCR3P51677 355 aa13.83□□□□□ -0.2
SS18-201ENST00000269137 PLOD1Q02809 727 aaPredicted RBP13.83□□□□□ -0.2
SS18-201ENST00000269137 CLCQ05315 142 aa13.83□□□□□ -0.2
SS18-201ENST00000269137 LCP2Q13094 533 aa13.83□□□□□ -0.2
SS18-201ENST00000269137 FZD5Q13467 585 aa13.83□□□□□ -0.2
SS18-201ENST00000269137 SYTL3Q4VX76 610 aa13.83□□□□□ -0.2
SS18-201ENST00000269137 SULT1C3Q6IMI6 304 aa13.83□□□□□ -0.2
SS18-201ENST00000269137 TRIM69Q86WT6 500 aa13.83□□□□□ -0.2
SS18-201ENST00000269137 SLC22A15Q8IZD6 547 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms