RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 MID1O15344 667 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 SPARCP09486 303 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 MAPK10P53779 464 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 FGL2Q14314 439 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 MIB1Q86YT6 1006 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 RPLP0P6Q8NHW5 317 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 SLC22A17Q8WUG5 538 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 SSX3Q99909 188 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 RIC1Q4ADV7 1423 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 BHMG1C9JSJ3 638 aaPredicted RBP4.62□□□□□ -1.67
SCN1A-220ENST00000641603 KDM4BO94953 1096 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 CCNB2O95067 398 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 CHMP24386 653 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 SRSF11Q05519 484 aaKnown RBP4.62□□□□□ -1.67
SCN1A-220ENST00000641603 CLVS2Q5SYC1 327 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 NDUFAF5Q5TEU4 345 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 DGLUCYQ7Z3D6 616 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 IGFN1Q86VF2 1251 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 SPPL2CQ8IUH8 684 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 SLC7A13Q8TCU3 470 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 SLC4A9Q96Q91 983 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 IFT22Q9H7X7 185 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 ATP13A1Q9HD20 1204 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 TLR8Q9NR97 1041 aaKnown RBP4.62□□□□□ -1.67
SCN1A-220ENST00000641603 SRRDQ9UH36 339 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 A0A1B0GVC2 190 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 RFXANKO14593 260 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 ADAM12O43184 909 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 MAP3K6O95382 1288 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 GSTM1P09488 218 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 COX7A2P14406 83 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 ZNF37AP17032 561 aaPredicted RBP4.62□□□□□ -1.67
SCN1A-220ENST00000641603 ZNF10P21506 573 aaPredicted RBP4.62□□□□□ -1.67
SCN1A-220ENST00000641603 KEAP1Q14145 624 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 ARL13AQ5H913 290 aaPredicted RBP4.62□□□□□ -1.67
SCN1A-220ENST00000641603 KIAA0930Q6ICG6 404 aaPredicted RBP4.62□□□□□ -1.67
SCN1A-220ENST00000641603 SLC51BQ86UW2 128 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 HDDC3Q8N4P3 179 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 PTGR2Q8N8N7 351 aaPredicted RBP4.62□□□□□ -1.67
SCN1A-220ENST00000641603 YIPF2Q9BWQ6 316 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 GATA5Q9BWX5 397 aaPredicted RBP4.62□□□□□ -1.67
SCN1A-220ENST00000641603 SEZ6LQ9BYH1 1024 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 C12orf65Q9H3J6 166 aaKnown RBP4.62□□□□□ -1.67
SCN1A-220ENST00000641603 TMEM134Q9H6X4 195 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 RNF121Q9H920 327 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 TCF7L1Q9HCS4 588 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 DYRK1BQ9Y463 629 aa4.62□□□□□ -1.67
SCN1A-220ENST00000641603 CARNS1A5YM72 827 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 ASB14A6NK59 587 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 KERAO60938 352 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 PGLSO95336 258 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 HOXD10P28358 340 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 SLC16A2P36021 539 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 LHX1P48742 406 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 HK3P52790 923 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 GPAT3Q53EU6 434 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 RALGPS1Q5JS13 557 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 MAP1SQ66K74 1059 aaPredicted RBP4.61□□□□□ -1.67
SCN1A-220ENST00000641603 TTLL6Q8N841 843 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 OR2M2Q96R28 347 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 FNDC11Q9BVV2 318 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 PIDD1Q9HB75 910 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 ERVK-5Q9HDB9 667 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 RPS6KB2Q9UBS0 482 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 CYTH4Q9UIA0 394 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 PRORSD1PA6NEY8 169 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 LCMT2O60294 686 aaKnown RBP4.61□□□□□ -1.67
SCN1A-220ENST00000641603 DNASE1P24855 282 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 TKTL1P51854 596 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 ARSFP54793 590 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 CD81P60033 236 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 SPIBQ01892 262 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 DNASE1L3Q13609 305 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 OXA1LQ15070 435 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 LDLRAP1Q5SW96 308 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 GPR158Q5T848 1215 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 MARC1Q5VT66 337 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 C1orf186Q6ZWK4 172 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 ZC3H3Q8IXZ2 948 aaKnown RBP4.61□□□□□ -1.67
SCN1A-220ENST00000641603 C12orf45Q8N5I9 185 aaPredicted RBP4.61□□□□□ -1.67
SCN1A-220ENST00000641603 C1orf52Q8N6N3 182 aaKnown RBP4.61□□□□□ -1.67
SCN1A-220ENST00000641603 ARL11Q969Q4 196 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 DMRTB1Q96MA1 342 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 LPIN3Q9BQK8 851 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 MTG2Q9H4K7 406 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 LIN7BQ9HAP6 207 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 FBXO5Q9UKT4 447 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 CDH10Q9Y6N8 788 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 AGLP35573 1532 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 GNG14A0A1W2PPG7 69 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 AGAP5A6NIR3 686 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 GABRDO14764 452 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 RLN1P04808 185 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 IFI30P13284 250 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 HOXA13P31271 388 aaPredicted RBP4.61□□□□□ -1.67
SCN1A-220ENST00000641603 ALDH3B2P48448 385 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 ALDH6A1Q02252 535 aaKnown RBP4.61□□□□□ -1.67
SCN1A-220ENST00000641603 GJB7Q6PEY0 223 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 USP30Q70CQ3 517 aa4.61□□□□□ -1.67
SCN1A-220ENST00000641603 ILDR2Q71H61 639 aa4.61□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms