RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 ELOCQ15369 112 aa9.71□□□□□ -0.86
LIG3-216ENST00000593099 ADGRD1Q6QNK2 874 aa9.71□□□□□ -0.86
LIG3-216ENST00000593099 ZNF572Q7Z3I7 529 aaPredicted RBP9.71□□□□□ -0.86
LIG3-216ENST00000593099 ADGRD2Q7Z7M1 963 aa9.71□□□□□ -0.86
LIG3-216ENST00000593099 CLYBLQ8N0X4 340 aa9.71□□□□□ -0.86
LIG3-216ENST00000593099 NXPE1Q8N323 547 aa9.71□□□□□ -0.86
LIG3-216ENST00000593099 ZFP28Q8NHY6 868 aa9.71□□□□□ -0.86
LIG3-216ENST00000593099 ISG20Q96AZ6 181 aaKnown RBP9.71□□□□□ -0.86
LIG3-216ENST00000593099 OXNAD1Q96HP4 312 aaPredicted RBP9.71□□□□□ -0.86
LIG3-216ENST00000593099 LMLNQ96KR4 655 aa9.71□□□□□ -0.86
LIG3-216ENST00000593099 NUSAP1Q9BXS6 441 aaKnown RBP9.71□□□□□ -0.86
LIG3-216ENST00000593099 NEUROG2Q9H2A3 272 aa9.71□□□□□ -0.86
LIG3-216ENST00000593099 RC3H2Q9HBD1 1191 aaKnown RBP9.71□□□□□ -0.86
LIG3-216ENST00000593099 USP29Q9HBJ7 922 aa9.71□□□□□ -0.86
LIG3-216ENST00000593099 ITM2CQ9NQX7 267 aa9.71□□□□□ -0.86
LIG3-216ENST00000593099 AURKCQ9UQB9 309 aa9.71□□□□□ -0.86
LIG3-216ENST00000593099 KCNK6Q9Y257 313 aa9.71□□□□□ -0.86
LIG3-216ENST00000593099 CCL26Q9Y258 94 aa9.71□□□□□ -0.86
LIG3-216ENST00000593099 A0A1W2PPM1 405 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 IGLON5A6NGN9 336 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 HHLA1C9JL84 531 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 LIN7AO14910 233 aaPredicted RBP9.7□□□□□ -0.86
LIG3-216ENST00000593099 AKAP10O43572 662 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 ADRB3P13945 408 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 IGFBP6P24592 240 aaPredicted RBP9.7□□□□□ -0.86
LIG3-216ENST00000593099 SSR2P43308 183 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 LAPTM5Q13571 262 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 PRPF38BQ5VTL8 546 aaKnown RBP9.7□□□□□ -0.86
LIG3-216ENST00000593099 PARGQ86W56 976 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 HEATR4Q86WZ0 1026 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 MIER2Q8N344 545 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 TRAM1L1Q8N609 369 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 GLIS1Q8NBF1 620 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 PEX13Q92968 403 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 ELSPBP1Q96BH3 223 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 CATSPER2Q96P56 530 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 OR2M4Q96R27 311 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 LDHAL6BQ9BYZ2 381 aaPredicted RBP9.7□□□□□ -0.86
LIG3-216ENST00000593099 CRISPLD1Q9H336 500 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 SGK2Q9HBY8 427 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 NLE1Q9NVX2 485 aaPredicted RBP9.7□□□□□ -0.86
LIG3-216ENST00000593099 CIDEBQ9UHD4 219 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 RAP2CQ9Y3L5 183 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 OR10H2O60403 315 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 ECI2O75521 394 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 AP2A2O94973 939 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 COX7A2P14406 83 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 ITGAXP20702 1163 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 PAX7P23759 505 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 CRHR1P34998 444 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 DUSP3P51452 185 aaPredicted RBP9.7□□□□□ -0.86
LIG3-216ENST00000593099 CREB5Q02930 508 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 ATP13A5Q4VNC0 1218 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 FAM182AQ5T1J6 154 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 HORMAD1Q86X24 394 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 GPR156Q8NFN8 814 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 PIWIL2Q8TC59 973 aaKnown RBP9.7□□□□□ -0.86
LIG3-216ENST00000593099 ATXN2LQ8WWM7 1075 aaKnown RBP9.7□□□□□ -0.86
LIG3-216ENST00000593099 GLYATL1Q969I3 302 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 HHIPQ96QV1 700 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 SPOCK3Q9BQ16 436 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 KIFC1Q9BW19 673 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 MTG2Q9H4K7 406 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 MRM3Q9HC36 420 aaKnown RBP9.7□□□□□ -0.86
LIG3-216ENST00000593099 KIF17Q9P2E2 1029 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 SIT1Q9Y3P8 196 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 F5P12259 2224 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 SOX11P35716 441 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 TNFRSF4P43489 277 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 CYTH1Q15438 398 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 CYB5D1Q6P9G0 228 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 TTC29Q8NA56 475 aaPredicted RBP9.7□□□□□ -0.86
LIG3-216ENST00000593099 HM13Q8TCT9 377 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 COL26A1Q96A83 441 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 CNDP1Q96KN2 507 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 THTPAQ9BU02 230 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 SLC17A9Q9BYT1 436 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 SLC2A6Q9UGQ3 507 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 CFAP73A6NFT4 308 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 CAPN8A6NHC0 703 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 IQCF5A8MTL0 148 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 PRR5-ARHGAP8B1AHC4 643 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 ABCB1P08183 1280 aaPredicted RBP9.7□□□□□ -0.86
LIG3-216ENST00000593099 C6P13671 934 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 HOXD9P28356 352 aaPredicted RBP9.7□□□□□ -0.86
LIG3-216ENST00000593099 HSPA7P48741 367 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 TMEM115Q12893 351 aaPredicted RBP9.7□□□□□ -0.86
LIG3-216ENST00000593099 TSNQ15631 228 aaKnown RBP9.7□□□□□ -0.86
LIG3-216ENST00000593099 FUT11Q495W5 492 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 FAM109BQ6ICB4 259 aaPredicted RBP9.7□□□□□ -0.86
LIG3-216ENST00000593099 PARM1Q6UWI2 310 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 TFGQ92734 400 aaPredicted RBP9.7□□□□□ -0.86
LIG3-216ENST00000593099 MRGPRX2Q96LB1 330 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 AARSD1Q9BTE6 412 aaKnown RBP9.7□□□□□ -0.86
LIG3-216ENST00000593099 SORCS3Q9UPU3 1222 aa9.7□□□□□ -0.86
LIG3-216ENST00000593099 RGSL1A5PLK6 1076 aa9.69□□□□□ -0.86
LIG3-216ENST00000593099 B4GALT3O60512 393 aa9.69□□□□□ -0.86
LIG3-216ENST00000593099 IFNA14P01570 189 aa9.69□□□□□ -0.86
LIG3-216ENST00000593099 SYPP08247 313 aa9.69□□□□□ -0.86
LIG3-216ENST00000593099 HNRNPLP14866 589 aaKnown RBP eCLIP9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms