RNA–Protein interactions for RNA: ENST00000582092.1

SS18-220, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 215 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-220ENST00000582092 TRAM1L1Q8N609 369 aa9.16□□□□□ -0.94
SS18-220ENST00000582092 OR56A4Q8NGH8 313 aa9.16□□□□□ -0.94
SS18-220ENST00000582092 OR6Y1Q8NGX8 325 aa9.16□□□□□ -0.94
SS18-220ENST00000582092 CEP70Q8NHQ1 597 aa9.16□□□□□ -0.94
SS18-220ENST00000582092 CD200R1Q8TD46 325 aa9.16□□□□□ -0.94
SS18-220ENST00000582092 CXorf40AQ8TE69 158 aa9.16□□□□□ -0.94
SS18-220ENST00000582092 GANCQ8TET4 914 aa9.16□□□□□ -0.94
SS18-220ENST00000582092 PTERQ96BW5 349 aa9.16□□□□□ -0.94
SS18-220ENST00000582092 EID2BQ96D98 161 aa9.16□□□□□ -0.94
SS18-220ENST00000582092 PDLIM5Q96HC4 596 aaKnown RBP9.16□□□□□ -0.94
SS18-220ENST00000582092 HIST1H2AHQ96KK5 128 aa9.16□□□□□ -0.94
SS18-220ENST00000582092 PPP1R36Q96LQ0 422 aa9.16□□□□□ -0.94
SS18-220ENST00000582092 HIST1H2AJQ99878 128 aa9.16□□□□□ -0.94
SS18-220ENST00000582092 EBF4Q9BQW3 602 aa9.16□□□□□ -0.94
SS18-220ENST00000582092 H2AFJQ9BTM1 129 aa9.16□□□□□ -0.94
SS18-220ENST00000582092 WRAP53Q9BUR4 548 aaKnown RBP9.16□□□□□ -0.94
SS18-220ENST00000582092 NUF2Q9BZD4 464 aa9.16□□□□□ -0.94
SS18-220ENST00000582092 ZCCHC2Q9C0B9 1178 aaKnown RBP9.16□□□□□ -0.94
SS18-220ENST00000582092 NMUR2Q9GZQ4 415 aa9.16□□□□□ -0.94
SS18-220ENST00000582092 MTG2Q9H4K7 406 aa9.16□□□□□ -0.94
SS18-220ENST00000582092 PRM3Q9NNZ6 103 aa9.16□□□□□ -0.94
SS18-220ENST00000582092 MID1IP1Q9NPA3 183 aa9.16□□□□□ -0.94
SS18-220ENST00000582092 ACSS2Q9NR19 701 aa9.16□□□□□ -0.94
SS18-220ENST00000582092 PRMT8Q9NR22 394 aaPredicted RBP9.16□□□□□ -0.94
SS18-220ENST00000582092 NUDT4Q9NZJ9 180 aa9.16□□□□□ -0.94
SS18-220ENST00000582092 KLHL42Q9P2K6 505 aa9.16□□□□□ -0.94
SS18-220ENST00000582092 ZDHHC2Q9UIJ5 367 aa9.16□□□□□ -0.94
SS18-220ENST00000582092 TRAF6Q9Y4K3 522 aa9.16□□□□□ -0.94
SS18-220ENST00000582092 FAM186AA6NE01 2351 aa9.16□□□□□ -0.94
SS18-220ENST00000582092 PRR23AA6NEV1 266 aa9.15□□□□□ -0.94
SS18-220ENST00000582092 IQCF5A8MTL0 148 aa9.15□□□□□ -0.94
SS18-220ENST00000582092 B2RBV5 119 aa9.15□□□□□ -0.94
SS18-220ENST00000582092 E9PBE3 544 aa9.15□□□□□ -0.94
SS18-220ENST00000582092 STX16-NPEPL1H3BU86 382 aa9.15□□□□□ -0.94
SS18-220ENST00000582092 PSMD11O00231 422 aa9.15□□□□□ -0.94
SS18-220ENST00000582092 CDC7O00311 574 aa9.15□□□□□ -0.94
SS18-220ENST00000582092 MATN2O00339 956 aa9.15□□□□□ -0.94
SS18-220ENST00000582092 STX16O14662 325 aa9.15□□□□□ -0.94
SS18-220ENST00000582092 KLHL41O60662 606 aa9.15□□□□□ -0.94
SS18-220ENST00000582092 CIB2O75838 187 aa9.15□□□□□ -0.94
SS18-220ENST00000582092 AP2A2O94973 939 aa9.15□□□□□ -0.94
SS18-220ENST00000582092 WISP3O95389 354 aaPredicted RBP9.15□□□□□ -0.94
SS18-220ENST00000582092 CBX6O95503 412 aa9.15□□□□□ -0.94
SS18-220ENST00000582092 ENO3P13929 434 aaPredicted RBP9.15□□□□□ -0.94
SS18-220ENST00000582092 CNR2P34972 360 aa9.15□□□□□ -0.94
SS18-220ENST00000582092 TNFRSF4P43489 277 aa9.15□□□□□ -0.94
SS18-220ENST00000582092 PSMD8P48556 350 aa9.15□□□□□ -0.94
SS18-220ENST00000582092 GALK1P51570 392 aa9.15□□□□□ -0.94
SS18-220ENST00000582092 DCDC1P59894 354 aa9.15□□□□□ -0.94
SS18-220ENST00000582092 STX1BP61266 288 aa9.15□□□□□ -0.94
SS18-220ENST00000582092 FZD5Q13467 585 aa9.15□□□□□ -0.94
SS18-220ENST00000582092 CCINQ13939 588 aa9.15□□□□□ -0.94
SS18-220ENST00000582092 RPS6KA2Q15349 733 aa9.15□□□□□ -0.94
SS18-220ENST00000582092 TTC31Q49AM3 519 aaPredicted RBP9.15□□□□□ -0.94
SS18-220ENST00000582092 ATP13A5Q4VNC0 1218 aa9.15□□□□□ -0.94
SS18-220ENST00000582092 SYTL3Q4VX76 610 aa9.15□□□□□ -0.94
SS18-220ENST00000582092 GPRC6AQ5T6X5 926 aa9.15□□□□□ -0.94
SS18-220ENST00000582092 FRMD7Q6ZUT3 714 aa9.15□□□□□ -0.94
SS18-220ENST00000582092 Q6ZVL8 140 aa9.15□□□□□ -0.94
SS18-220ENST00000582092 DET1Q7L5Y6 550 aa9.15□□□□□ -0.94
SS18-220ENST00000582092 HSD11B1LQ7Z5J1 315 aa9.15□□□□□ -0.94
SS18-220ENST00000582092 DDIASQ8IXT1 998 aa9.15□□□□□ -0.94
SS18-220ENST00000582092 CLDN19Q8N6F1 224 aa9.15□□□□□ -0.94
SS18-220ENST00000582092 RAB7BQ96AH8 199 aa9.15□□□□□ -0.94
SS18-220ENST00000582092 AP2M1Q96CW1 435 aa9.15□□□□□ -0.94
SS18-220ENST00000582092 FOPNLQ96NB1 174 aa9.15□□□□□ -0.94
SS18-220ENST00000582092 TMEM237Q96Q45 408 aa9.15□□□□□ -0.94
SS18-220ENST00000582092 BTBD10Q9BSF8 475 aa9.15□□□□□ -0.94
SS18-220ENST00000582092 HGH1Q9BTY7 390 aa9.15□□□□□ -0.94
SS18-220ENST00000582092 RIOK2Q9BVS4 552 aaKnown RBP9.15□□□□□ -0.94
SS18-220ENST00000582092 BOCQ9BWV1 1114 aa9.15□□□□□ -0.94
SS18-220ENST00000582092 ZMYND15Q9H091 742 aa9.15□□□□□ -0.94
SS18-220ENST00000582092 LRMDAQ9H2I8 198 aa9.15□□□□□ -0.94
SS18-220ENST00000582092 SLC40A1Q9NP59 571 aa9.15□□□□□ -0.94
SS18-220ENST00000582092 ARL8BQ9NVJ2 186 aa9.15□□□□□ -0.94
SS18-220ENST00000582092 WWOXQ9NZC7 414 aa9.15□□□□□ -0.94
SS18-220ENST00000582092 ARMCX1Q9P291 453 aa9.15□□□□□ -0.94
SS18-220ENST00000582092 LNPEPQ9UIQ6 1025 aa9.15□□□□□ -0.94
SS18-220ENST00000582092 G3BP2Q9UN86 482 aaKnown RBP9.15□□□□□ -0.94
SS18-220ENST00000582092 COL4A3Q01955 1670 aa9.15□□□□□ -0.94
SS18-220ENST00000582092 SHISA7A6NL88 538 aa9.14□□□□□ -0.95
SS18-220ENST00000582092 EIF3FO00303 357 aaPredicted RBP9.14□□□□□ -0.95
SS18-220ENST00000582092 VPS4BO75351 444 aa9.14□□□□□ -0.95
SS18-220ENST00000582092 SKAP2O75563 359 aaPredicted RBP9.14□□□□□ -0.95
SS18-220ENST00000582092 CTSLP07711 333 aa9.14□□□□□ -0.95
SS18-220ENST00000582092 THRAP10827 490 aa9.14□□□□□ -0.95
SS18-220ENST00000582092 VCLP18206 1134 aa9.14□□□□□ -0.95
SS18-220ENST00000582092 LHCGRP22888 699 aa9.14□□□□□ -0.95
SS18-220ENST00000582092 MAP4P27816 1152 aaKnown RBP9.14□□□□□ -0.95
SS18-220ENST00000582092 PRDX6P30041 224 aa9.14□□□□□ -0.95
SS18-220ENST00000582092 ADSLP30566 484 aaPredicted RBP9.14□□□□□ -0.95
SS18-220ENST00000582092 ETV3P41162 512 aa9.14□□□□□ -0.95
SS18-220ENST00000582092 GPR1P46091 355 aa9.14□□□□□ -0.95
SS18-220ENST00000582092 CCR10P46092 362 aa9.14□□□□□ -0.95
SS18-220ENST00000582092 CLCN7P51798 805 aa9.14□□□□□ -0.95
SS18-220ENST00000582092 TIAL1Q01085 375 aaKnown RBP eCLIP9.14□□□□□ -0.95
SS18-220ENST00000582092 SATB1Q01826 763 aa9.14□□□□□ -0.95
SS18-220ENST00000582092 CLCQ05315 142 aa9.14□□□□□ -0.95
SS18-220ENST00000582092 SFSWAPQ12872 951 aaKnown RBP9.14□□□□□ -0.95
SS18-220ENST00000582092 STARD3Q14849 445 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 504.5 ms