RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 TMEM164Q5U3C3 297 aa23.41■■□□□ 1.34
SHMT1-206ENST00000579558 PLXDC1Q8IUK5 500 aa23.41■■□□□ 1.34
SHMT1-206ENST00000579558 REXO1L1PQ8IX06 675 aa23.41■■□□□ 1.34
SHMT1-206ENST00000579558 PRELID2Q8N945 189 aa23.41■■□□□ 1.34
SHMT1-206ENST00000579558 WWP1Q9H0M0 922 aa23.41■■□□□ 1.34
SHMT1-206ENST00000579558 KCNF1Q9H3M0 494 aa23.41■■□□□ 1.34
SHMT1-206ENST00000579558 PRORYQ9H606 182 aa23.41■■□□□ 1.34
SHMT1-206ENST00000579558 OGFRQ9NZT2 677 aa23.41■■□□□ 1.34
SHMT1-206ENST00000579558 FOXJ2Q9P0K8 574 aa23.41■■□□□ 1.34
SHMT1-206ENST00000579558 ACSL6Q9UKU0 697 aa23.41■■□□□ 1.34
SHMT1-206ENST00000579558 ACSL5Q9ULC5 683 aa23.41■■□□□ 1.34
SHMT1-206ENST00000579558 MN1Q10571 1320 aaPredicted RBP23.4■■□□□ 1.34
SHMT1-206ENST00000579558 C9orf172C9J069 976 aa23.4■■□□□ 1.34
SHMT1-206ENST00000579558 ADRA1DP25100 572 aa23.4■■□□□ 1.34
SHMT1-206ENST00000579558 UCNP55089 124 aa23.4■■□□□ 1.34
SHMT1-206ENST00000579558 CLN3Q13286 438 aa23.4■■□□□ 1.34
SHMT1-206ENST00000579558 ARHGAP22Q7Z5H3 698 aa23.4■■□□□ 1.34
SHMT1-206ENST00000579558 FAM129CQ86XR2 697 aa23.4■■□□□ 1.34
SHMT1-206ENST00000579558 PIANPQ8IYJ0 282 aa23.4■■□□□ 1.34
SHMT1-206ENST00000579558 GPR150Q8NGU9 434 aa23.4■■□□□ 1.34
SHMT1-206ENST00000579558 HM13Q8TCT9 377 aa23.4■■□□□ 1.34
SHMT1-206ENST00000579558 ANP32BQ92688 251 aaKnown RBP23.4■■□□□ 1.34
SHMT1-206ENST00000579558 PBKQ96KB5 322 aa23.4■■□□□ 1.34
SHMT1-206ENST00000579558 FCRL3Q96P31 734 aaPredicted RBP23.4■■□□□ 1.34
SHMT1-206ENST00000579558 TAAR9Q96RI9 348 aa23.4■■□□□ 1.34
SHMT1-206ENST00000579558 RANBP9Q96S59 729 aa23.4■■□□□ 1.34
SHMT1-206ENST00000579558 EIF2B3Q9NR50 452 aaKnown RBP23.4■■□□□ 1.34
SHMT1-206ENST00000579558 IMP3Q9NV31 184 aaKnown RBP23.4■■□□□ 1.34
SHMT1-206ENST00000579558 WDR70Q9NW82 654 aa23.4■■□□□ 1.34
SHMT1-206ENST00000579558 PTPRQQ9UMZ3 2332 aa23.39■■□□□ 1.34
SHMT1-206ENST00000579558 CCDC162PA2VCL2 907 aa23.39■■□□□ 1.33
SHMT1-206ENST00000579558 OR51F1A6NGY5 319 aa23.39■■□□□ 1.33
SHMT1-206ENST00000579558 EFCAB7A8K855 629 aa23.39■■□□□ 1.33
SHMT1-206ENST00000579558 SLC35G4P0C7Q5 338 aa23.39■■□□□ 1.33
SHMT1-206ENST00000579558 MTHFD1P11586 935 aaKnown RBP23.39■■□□□ 1.33
SHMT1-206ENST00000579558 GFERP55789 205 aa23.39■■□□□ 1.33
SHMT1-206ENST00000579558 TMPRSS3P57727 454 aa23.39■■□□□ 1.33
SHMT1-206ENST00000579558 CXADRP78310 365 aa23.39■■□□□ 1.33
SHMT1-206ENST00000579558 DBN1Q16643 649 aa23.39■■□□□ 1.33
SHMT1-206ENST00000579558 TSTD2Q5T7W7 516 aa23.39■■□□□ 1.33
SHMT1-206ENST00000579558 CFAP206Q8IYR0 622 aa23.39■■□□□ 1.33
SHMT1-206ENST00000579558 SLC35F6Q8N357 371 aa23.39■■□□□ 1.33
SHMT1-206ENST00000579558 RASGEF1CQ8N431 466 aa23.39■■□□□ 1.33
SHMT1-206ENST00000579558 OR13J1Q8NGT2 312 aa23.39■■□□□ 1.33
SHMT1-206ENST00000579558 ART4Q93070 314 aa23.39■■□□□ 1.33
SHMT1-206ENST00000579558 C12orf66Q96MD2 445 aa23.39■■□□□ 1.33
SHMT1-206ENST00000579558 B3GNT4Q9C0J1 378 aa23.39■■□□□ 1.33
SHMT1-206ENST00000579558 OCIAD1Q9NX40 245 aa23.39■■□□□ 1.33
SHMT1-206ENST00000579558 SLC2A6Q9UGQ3 507 aa23.39■■□□□ 1.33
SHMT1-206ENST00000579558 CFAP20Q9Y6A4 193 aaKnown RBP23.39■■□□□ 1.33
SHMT1-206ENST00000579558 ATRXP46100 2492 aa23.39■■□□□ 1.33
SHMT1-206ENST00000579558 POLBP06746 335 aa23.38■■□□□ 1.33
SHMT1-206ENST00000579558 XKR5Q6UX68 686 aa23.38■■□□□ 1.33
SHMT1-206ENST00000579558 LILRA3Q8N6C8 439 aaPredicted RBP23.38■■□□□ 1.33
SHMT1-206ENST00000579558 RSC1A1Q92681 617 aa23.38■■□□□ 1.33
SHMT1-206ENST00000579558 HDAC10Q969S8 669 aa23.38■■□□□ 1.33
SHMT1-206ENST00000579558 TBRG4Q969Z0 631 aaKnown RBP eCLIP23.38■■□□□ 1.33
SHMT1-206ENST00000579558 MS4A14Q96JA4 679 aa23.38■■□□□ 1.33
SHMT1-206ENST00000579558 TGM7Q96PF1 710 aa23.38■■□□□ 1.33
SHMT1-206ENST00000579558 INSM2Q96T92 566 aaPredicted RBP23.38■■□□□ 1.33
SHMT1-206ENST00000579558 VPS37BQ9H9H4 285 aa23.38■■□□□ 1.33
SHMT1-206ENST00000579558 TRMT1Q9NXH9 659 aaKnown RBP23.38■■□□□ 1.33
SHMT1-206ENST00000579558 SLC39A1Q9NY26 324 aa23.38■■□□□ 1.33
SHMT1-206ENST00000579558 SMARCAL1Q9NZC9 954 aa23.38■■□□□ 1.33
SHMT1-206ENST00000579558 RIMKLBQ9ULI2 386 aa23.38■■□□□ 1.33
SHMT1-206ENST00000579558 TCAF1Q9Y4C2 921 aa23.38■■□□□ 1.33
SHMT1-206ENST00000579558 C17orf113A0A1B0GUU1 675 aa23.37■■□□□ 1.33
SHMT1-206ENST00000579558 B4E171 279 aa23.37■■□□□ 1.33
SHMT1-206ENST00000579558 C9P02748 559 aa23.37■■□□□ 1.33
SHMT1-206ENST00000579558 LIPCP11150 499 aa23.37■■□□□ 1.33
SHMT1-206ENST00000579558 CD82P27701 267 aa23.37■■□□□ 1.33
SHMT1-206ENST00000579558 FOXN2P32314 431 aa23.37■■□□□ 1.33
SHMT1-206ENST00000579558 TSPAN7P41732 249 aa23.37■■□□□ 1.33
SHMT1-206ENST00000579558 CAPZBP47756 277 aa23.37■■□□□ 1.33
SHMT1-206ENST00000579558 DUS1LQ6P1R4 473 aaKnown RBP23.37■■□□□ 1.33
SHMT1-206ENST00000579558 AFTPHQ6ULP2 937 aa23.37■■□□□ 1.33
SHMT1-206ENST00000579558 NLRP9Q7RTR0 991 aa23.37■■□□□ 1.33
SHMT1-206ENST00000579558 ZFAND4Q86XD8 727 aa23.37■■□□□ 1.33
SHMT1-206ENST00000579558 CLDN19Q8N6F1 224 aa23.37■■□□□ 1.33
SHMT1-206ENST00000579558 PPHLN1Q8NEY8 458 aaKnown RBP23.37■■□□□ 1.33
SHMT1-206ENST00000579558 SPDYE1Q8NFV5 336 aaPredicted RBP23.37■■□□□ 1.33
SHMT1-206ENST00000579558 JPH3Q8WXH2 748 aaPredicted RBP23.37■■□□□ 1.33
SHMT1-206ENST00000579558 PMEPA1Q969W9 287 aa23.37■■□□□ 1.33
SHMT1-206ENST00000579558 C9orf72Q96LT7 481 aa23.37■■□□□ 1.33
SHMT1-206ENST00000579558 ZNF778Q96MU6 729 aa23.37■■□□□ 1.33
SHMT1-206ENST00000579558 CCM2Q9BSQ5 444 aa23.37■■□□□ 1.33
SHMT1-206ENST00000579558 CPNE5Q9HCH3 593 aa23.37■■□□□ 1.33
SHMT1-206ENST00000579558 PCDHGA3Q9Y5H0 932 aa23.37■■□□□ 1.33
SHMT1-206ENST00000579558 CAPN5O15484 640 aaPredicted RBP23.36■■□□□ 1.33
SHMT1-206ENST00000579558 GOT2P00505 430 aaKnown RBP23.36■■□□□ 1.33
SHMT1-206ENST00000579558 SESN2P58004 480 aaPredicted RBP23.36■■□□□ 1.33
SHMT1-206ENST00000579558 ITIH4Q14624 930 aa23.36■■□□□ 1.33
SHMT1-206ENST00000579558 GSE1Q14687 1217 aa23.36■■□□□ 1.33
SHMT1-206ENST00000579558 PLCL1Q15111 1095 aa23.36■■□□□ 1.33
SHMT1-206ENST00000579558 TGIF1Q15583 401 aa23.36■■□□□ 1.33
SHMT1-206ENST00000579558 KCTD19Q17RG1 926 aaPredicted RBP23.36■■□□□ 1.33
SHMT1-206ENST00000579558 GPR155Q7Z3F1 870 aa23.36■■□□□ 1.33
SHMT1-206ENST00000579558 BMPERQ8N8U9 685 aa23.36■■□□□ 1.33
SHMT1-206ENST00000579558 RMDN2Q96LZ7 410 aa23.36■■□□□ 1.33
SHMT1-206ENST00000579558 DDA1Q9BW61 102 aa23.36■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms