RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, human

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-222	ENST00000568232	ANKRD62	A6NC57	917 aa		11.45	□□□□□ -0.58
CLK3-222	ENST00000568232	TMEM150C	B9EJG8	249 aa		11.45	□□□□□ -0.58
CLK3-222	ENST00000568232	PEX12	O00623	359 aa		11.45	□□□□□ -0.58
CLK3-222	ENST00000568232	ALOX12B	O75342	701 aa		11.45	□□□□□ -0.58
CLK3-222	ENST00000568232	CALB1	P05937	261 aa		11.45	□□□□□ -0.58
CLK3-222	ENST00000568232	CAPN3	P20807	821 aa		11.45	□□□□□ -0.58
CLK3-222	ENST00000568232	AMPD1	P23109	780 aa		11.45	□□□□□ -0.58
CLK3-222	ENST00000568232	KPNA2	P52292	529 aa	Known RBP	11.45	□□□□□ -0.58
CLK3-222	ENST00000568232	SOX8	P57073	446 aa		11.45	□□□□□ -0.58
CLK3-222	ENST00000568232	OTUD4	Q01804	1114 aa	Known RBP	11.45	□□□□□ -0.58
CLK3-222	ENST00000568232	DSC2	Q02487	901 aa		11.45	□□□□□ -0.58
CLK3-222	ENST00000568232	ZNF169	Q14929	603 aa	Predicted RBP	11.45	□□□□□ -0.58
CLK3-222	ENST00000568232	CLEC16A	Q2KHT3	1053 aa		11.45	□□□□□ -0.58
CLK3-222	ENST00000568232	KHDC1	Q4VXA5	237 aa	Known RBP	11.45	□□□□□ -0.58
CLK3-222	ENST00000568232	HSP90AA4P	Q58FG1	418 aa		11.45	□□□□□ -0.58
CLK3-222	ENST00000568232	KLHL35	Q6PF15	583 aa		11.45	□□□□□ -0.58
CLK3-222	ENST00000568232	FAM180A	Q6UWF9	173 aa		11.45	□□□□□ -0.58
CLK3-222	ENST00000568232	CYP4V2	Q6ZWL3	525 aa	Predicted RBP	11.45	□□□□□ -0.58
CLK3-222	ENST00000568232	MON1B	Q7L1V2	547 aa		11.45	□□□□□ -0.58
CLK3-222	ENST00000568232	C11orf96	Q7Z7L8	435 aa		11.45	□□□□□ -0.58
CLK3-222	ENST00000568232	ELOA2	Q8IYF1	753 aa	Predicted RBP	11.45	□□□□□ -0.58
CLK3-222	ENST00000568232	ZNF808	Q8N4W9	903 aa	Predicted RBP	11.45	□□□□□ -0.58
CLK3-222	ENST00000568232	LPCAT1	Q8NF37	534 aa		11.45	□□□□□ -0.58
CLK3-222	ENST00000568232	GBP5	Q96PP8	586 aa		11.45	□□□□□ -0.58
CLK3-222	ENST00000568232	CD180	Q99467	661 aa		11.45	□□□□□ -0.58
CLK3-222	ENST00000568232	OLAH	Q9NV23	265 aa		11.45	□□□□□ -0.58
CLK3-222	ENST00000568232	PKD2L2	Q9NZM6	624 aa		11.45	□□□□□ -0.58
CLK3-222	ENST00000568232	PSMD13	Q9UNM6	376 aa		11.45	□□□□□ -0.58
CLK3-222	ENST00000568232	PTRH2	Q9Y3E5	179 aa	Known RBP	11.45	□□□□□ -0.58
CLK3-222	ENST00000568232	SPG11	Q96JI7	2443 aa		11.45	□□□□□ -0.58
CLK3-222	ENST00000568232	MAP1A	P78559	2803 aa	Predicted RBP	11.45	□□□□□ -0.58
CLK3-222	ENST00000568232	PKDREJ	Q9NTG1	2253 aa		11.44	□□□□□ -0.58
CLK3-222	ENST00000568232	OR6C74	A6NCV1	312 aa		11.44	□□□□□ -0.58
CLK3-222	ENST00000568232	SLC9B1P1	A6NJY1	282 aa		11.44	□□□□□ -0.58
CLK3-222	ENST00000568232		C9J4A7	227 aa		11.44	□□□□□ -0.58
CLK3-222	ENST00000568232	CCL21	O00585	134 aa		11.44	□□□□□ -0.58
CLK3-222	ENST00000568232	KCNN4	O15554	427 aa		11.44	□□□□□ -0.58
CLK3-222	ENST00000568232	KLHL41	O60662	606 aa		11.44	□□□□□ -0.58
CLK3-222	ENST00000568232	CYP2A7	P20853	494 aa		11.44	□□□□□ -0.58
CLK3-222	ENST00000568232	SRSF11	Q05519	484 aa	Known RBP	11.44	□□□□□ -0.58
CLK3-222	ENST00000568232	RPE65	Q16518	533 aa		11.44	□□□□□ -0.58
CLK3-222	ENST00000568232	ZNF569	Q5MCW4	686 aa		11.44	□□□□□ -0.58
CLK3-222	ENST00000568232	ZNF385C	Q66K41	422 aa	Predicted RBP	11.44	□□□□□ -0.58
CLK3-222	ENST00000568232	DCUN1D2	Q6PH85	259 aa		11.44	□□□□□ -0.58
CLK3-222	ENST00000568232	PPP1R32	Q7Z5V6	425 aa		11.44	□□□□□ -0.58
CLK3-222	ENST00000568232	RAVER1	Q8IY67	606 aa	Known RBP	11.44	□□□□□ -0.58
CLK3-222	ENST00000568232	GPR26	Q8NDV2	337 aa		11.44	□□□□□ -0.58
CLK3-222	ENST00000568232	CATSPER1	Q8NEC5	780 aa		11.44	□□□□□ -0.58
CLK3-222	ENST00000568232	NSMCE1	Q8WV22	266 aa		11.44	□□□□□ -0.58
CLK3-222	ENST00000568232	ZNF653	Q96CK0	615 aa		11.44	□□□□□ -0.58
CLK3-222	ENST00000568232	IP6K3	Q96PC2	410 aa		11.44	□□□□□ -0.58
CLK3-222	ENST00000568232	TDRD1	Q9BXT4	1180 aa	Known RBP	11.44	□□□□□ -0.58
CLK3-222	ENST00000568232	SLC7A5P2	Q9GIP4	190 aa		11.44	□□□□□ -0.58
CLK3-222	ENST00000568232	ATP13A2	Q9NQ11	1180 aa		11.44	□□□□□ -0.58
CLK3-222	ENST00000568232	SUCO	Q9UBS9	1254 aa	Known RBP	11.44	□□□□□ -0.58
CLK3-222	ENST00000568232	SH3BGRL2	Q9UJC5	107 aa		11.44	□□□□□ -0.58
CLK3-222	ENST00000568232	BTRC	Q9Y297	605 aa		11.44	□□□□□ -0.58
CLK3-222	ENST00000568232	PADI2	Q9Y2J8	665 aa		11.44	□□□□□ -0.58
CLK3-222	ENST00000568232	NEU2	Q9Y3R4	380 aa		11.44	□□□□□ -0.58
CLK3-222	ENST00000568232	ATP6V1D	Q9Y5K8	247 aa		11.44	□□□□□ -0.58
CLK3-222	ENST00000568232	CFAP20	Q9Y6A4	193 aa	Known RBP	11.44	□□□□□ -0.58
CLK3-222	ENST00000568232	EIF3CL	B5ME19	914 aa	Known RBP	11.43	□□□□□ -0.58
CLK3-222	ENST00000568232	GPR89A	B7ZAQ6	455 aa		11.43	□□□□□ -0.58
CLK3-222	ENST00000568232	PES1	O00541	588 aa	Known RBP	11.43	□□□□□ -0.58
CLK3-222	ENST00000568232	ZNF749	O43361	778 aa		11.43	□□□□□ -0.58
CLK3-222	ENST00000568232	CNOT3	O75175	753 aa	Known RBP	11.43	□□□□□ -0.58
CLK3-222	ENST00000568232	CDK14	O94921	469 aa		11.43	□□□□□ -0.58
CLK3-222	ENST00000568232	GPR89B	P0CG08	455 aa		11.43	□□□□□ -0.58
CLK3-222	ENST00000568232	CBSL	P0DN79	551 aa		11.43	□□□□□ -0.58
CLK3-222	ENST00000568232	AGXT	P21549	392 aa		11.43	□□□□□ -0.58
CLK3-222	ENST00000568232	PSMA2	P25787	234 aa		11.43	□□□□□ -0.58
CLK3-222	ENST00000568232	CBS	P35520	551 aa		11.43	□□□□□ -0.58
CLK3-222	ENST00000568232	HADHA	P40939	763 aa		11.43	□□□□□ -0.58
CLK3-222	ENST00000568232	HAL	P42357	657 aa		11.43	□□□□□ -0.58
CLK3-222	ENST00000568232	KIR3DL1	P43629	444 aa		11.43	□□□□□ -0.58
CLK3-222	ENST00000568232	HCAR3	P49019	387 aa		11.43	□□□□□ -0.58
CLK3-222	ENST00000568232	KLK7	P49862	253 aa		11.43	□□□□□ -0.58
CLK3-222	ENST00000568232	TDGF1P3	P51864	188 aa		11.43	□□□□□ -0.58
CLK3-222	ENST00000568232	CDSN	Q15517	529 aa		11.43	□□□□□ -0.58
CLK3-222	ENST00000568232	CAMK4	Q16566	473 aa		11.43	□□□□□ -0.58
CLK3-222	ENST00000568232	ANKRD20A8P	Q5CZ79	823 aa		11.43	□□□□□ -0.58
CLK3-222	ENST00000568232	ZFYVE27	Q5T4F4	411 aa		11.43	□□□□□ -0.58
CLK3-222	ENST00000568232	C1orf189	Q5VU69	101 aa		11.43	□□□□□ -0.58
CLK3-222	ENST00000568232	ZNF324B	Q6AW86	544 aa	Predicted RBP	11.43	□□□□□ -0.58
CLK3-222	ENST00000568232	IGFL2	Q6UWQ7	119 aa		11.43	□□□□□ -0.58
CLK3-222	ENST00000568232	ATPAF2	Q8N5M1	289 aa		11.43	□□□□□ -0.58
CLK3-222	ENST00000568232	TEX26	Q8N6G2	289 aa		11.43	□□□□□ -0.58
CLK3-222	ENST00000568232	GLYATL1	Q969I3	302 aa		11.43	□□□□□ -0.58
CLK3-222	ENST00000568232	LYSMD1	Q96S90	227 aa		11.43	□□□□□ -0.58
CLK3-222	ENST00000568232	EIF3C	Q99613	913 aa	Known RBP	11.43	□□□□□ -0.58
CLK3-222	ENST00000568232	TUBGCP2	Q9BSJ2	902 aa		11.43	□□□□□ -0.58
CLK3-222	ENST00000568232	DHRS4	Q9BTZ2	278 aa		11.43	□□□□□ -0.58
CLK3-222	ENST00000568232	FANCE	Q9HB96	536 aa		11.43	□□□□□ -0.58
CLK3-222	ENST00000568232	PCDH9	Q9HC56	1237 aa		11.43	□□□□□ -0.58
CLK3-222	ENST00000568232	SEPT11	Q9NVA2	429 aa	Known RBP	11.43	□□□□□ -0.58
CLK3-222	ENST00000568232	DNPEP	Q9ULA0	475 aa		11.43	□□□□□ -0.58
CLK3-222	ENST00000568232	RGSL1	A5PLK6	1076 aa		11.42	□□□□□ -0.58
CLK3-222	ENST00000568232	PCDH17	O14917	1159 aa		11.42	□□□□□ -0.58
CLK3-222	ENST00000568232	IGHE	P01854	428 aa		11.42	□□□□□ -0.58
CLK3-222	ENST00000568232	CD99	P14209	185 aa		11.42	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms