RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 TMEM126BQ8IUX1 230 aa19.96■□□□□ 0.79
CLN3-230ENST00000568076 SFRP1Q8N474 314 aa19.96■□□□□ 0.79
CLN3-230ENST00000568076 MINDY1Q8N5J2 469 aa19.96■□□□□ 0.79
CLN3-230ENST00000568076 TMEM102Q8N9M5 508 aaPredicted RBP19.96■□□□□ 0.79
CLN3-230ENST00000568076 METTL6Q8TCB7 284 aa19.96■□□□□ 0.79
CLN3-230ENST00000568076 ASIC4Q96FT7 647 aa19.96■□□□□ 0.79
CLN3-230ENST00000568076 DCUN1D1Q96GG9 259 aa19.96■□□□□ 0.79
CLN3-230ENST00000568076 TMEM79Q9BSE2 394 aa19.96■□□□□ 0.79
CLN3-230ENST00000568076 APOL5Q9BWW9 433 aa19.96■□□□□ 0.79
CLN3-230ENST00000568076 CEP44Q9C0F1 390 aa19.96■□□□□ 0.79
CLN3-230ENST00000568076 SPATS2LQ9NUQ6 558 aaKnown RBP19.96■□□□□ 0.79
CLN3-230ENST00000568076 TDP1Q9NUW8 608 aa19.96■□□□□ 0.79
CLN3-230ENST00000568076 POP4O95707 220 aaKnown RBP19.95■□□□□ 0.78
CLN3-230ENST00000568076 CAPNS1P04632 268 aa19.95■□□□□ 0.78
CLN3-230ENST00000568076 LYNP07948 512 aa19.95■□□□□ 0.78
CLN3-230ENST00000568076 RHOP08100 348 aa19.95■□□□□ 0.78
CLN3-230ENST00000568076 C1SP09871 688 aa19.95■□□□□ 0.78
CLN3-230ENST00000568076 VCLP18206 1134 aa19.95■□□□□ 0.78
CLN3-230ENST00000568076 RHDQ02161 417 aa19.95■□□□□ 0.78
CLN3-230ENST00000568076 GRIK2Q13002 908 aa19.95■□□□□ 0.78
CLN3-230ENST00000568076 RCAN2Q14206 197 aa19.95■□□□□ 0.78
CLN3-230ENST00000568076 CYP2R1Q6VVX0 501 aa19.95■□□□□ 0.78
CLN3-230ENST00000568076 ADIPOR2Q86V24 386 aa19.95■□□□□ 0.78
CLN3-230ENST00000568076 IRF7Q92985 503 aa19.95■□□□□ 0.78
CLN3-230ENST00000568076 VPS33AQ96AX1 596 aa19.95■□□□□ 0.78
CLN3-230ENST00000568076 ARMC5Q96C12 935 aa19.95■□□□□ 0.78
CLN3-230ENST00000568076 SPDL1Q96EA4 605 aa19.95■□□□□ 0.78
CLN3-230ENST00000568076 HBEGFQ99075 208 aa19.95■□□□□ 0.78
CLN3-230ENST00000568076 CCT7Q99832 543 aa19.95■□□□□ 0.78
CLN3-230ENST00000568076 HOPXQ9BPY8 73 aaPredicted RBP19.95■□□□□ 0.78
CLN3-230ENST00000568076 BRD9Q9H8M2 597 aa19.95■□□□□ 0.78
CLN3-230ENST00000568076 IPPKQ9H8X2 491 aa19.95■□□□□ 0.78
CLN3-230ENST00000568076 HCFC2Q9Y5Z7 792 aa19.95■□□□□ 0.78
CLN3-230ENST00000568076 TCRBV3S1A0A5B6 114 aa19.95■□□□□ 0.78
CLN3-230ENST00000568076 KATNA1O75449 491 aa19.95■□□□□ 0.78
CLN3-230ENST00000568076 FGBP02675 491 aa19.95■□□□□ 0.78
CLN3-230ENST00000568076 LINGO3P0C6S8 592 aa19.95■□□□□ 0.78
CLN3-230ENST00000568076 TYRP14679 529 aa19.95■□□□□ 0.78
CLN3-230ENST00000568076 SLC6A2P23975 617 aa19.95■□□□□ 0.78
CLN3-230ENST00000568076 IL12AP29459 219 aa19.95■□□□□ 0.78
CLN3-230ENST00000568076 ARL1P40616 181 aaPredicted RBP19.95■□□□□ 0.78
CLN3-230ENST00000568076 NSG1P42857 185 aa19.95■□□□□ 0.78
CLN3-230ENST00000568076 GDF5P43026 501 aa19.95■□□□□ 0.78
CLN3-230ENST00000568076 COQ5Q5HYK3 327 aa19.95■□□□□ 0.78
CLN3-230ENST00000568076 TMEM215Q68D42 235 aa19.95■□□□□ 0.78
CLN3-230ENST00000568076 OR52E8Q6IFG1 317 aa19.95■□□□□ 0.78
CLN3-230ENST00000568076 CAPRIN2Q6IMN6 1127 aaKnown RBP19.95■□□□□ 0.78
CLN3-230ENST00000568076 SLC15A3Q8IY34 581 aa19.95■□□□□ 0.78
CLN3-230ENST00000568076 SLCO4A1Q96BD0 722 aa19.95■□□□□ 0.78
CLN3-230ENST00000568076 SPHK2Q9NRA0 654 aa19.95■□□□□ 0.78
CLN3-230ENST00000568076 LATS2Q9NRM7 1088 aa19.95■□□□□ 0.78
CLN3-230ENST00000568076 RIC8BQ9NVN3 520 aa19.95■□□□□ 0.78
CLN3-230ENST00000568076 CMTM6Q9NX76 183 aa19.95■□□□□ 0.78
CLN3-230ENST00000568076 ZDHHC3Q9NYG2 299 aa19.95■□□□□ 0.78
CLN3-230ENST00000568076 B4GALT6Q9UBX8 382 aa19.95■□□□□ 0.78
CLN3-230ENST00000568076 SCOCQ9UIL1 159 aa19.95■□□□□ 0.78
CLN3-230ENST00000568076 PLXNB3Q9ULL4 1909 aa19.94■□□□□ 0.78
CLN3-230ENST00000568076 A0A1W2PP18 115 aa19.94■□□□□ 0.78
CLN3-230ENST00000568076 SLC22A3O75751 556 aa19.94■□□□□ 0.78
CLN3-230ENST00000568076 PTPN2P17706 415 aa19.94■□□□□ 0.78
CLN3-230ENST00000568076 NTHL1P78549 312 aa19.94■□□□□ 0.78
CLN3-230ENST00000568076 PDCD4Q53EL6 469 aaKnown RBP19.94■□□□□ 0.78
CLN3-230ENST00000568076 RARS2Q5T160 578 aaKnown RBP19.94■□□□□ 0.78
CLN3-230ENST00000568076 FBXL19Q6PCT2 694 aa19.94■□□□□ 0.78
CLN3-230ENST00000568076 IL27RAQ6UWB1 636 aa19.94■□□□□ 0.78
CLN3-230ENST00000568076 NECAB2Q7Z6G3 386 aa19.94■□□□□ 0.78
CLN3-230ENST00000568076 FNDC5Q8NAU1 212 aa19.94■□□□□ 0.78
CLN3-230ENST00000568076 ICA1LQ8NDH6 482 aa19.94■□□□□ 0.78
CLN3-230ENST00000568076 OR2A12Q8NGT7 310 aa19.94■□□□□ 0.78
CLN3-230ENST00000568076 TSPEARQ8WU66 669 aa19.94■□□□□ 0.78
CLN3-230ENST00000568076 POF1BQ8WVV4 589 aa19.94■□□□□ 0.78
CLN3-230ENST00000568076 RHBDF1Q96CC6 855 aa19.94■□□□□ 0.78
CLN3-230ENST00000568076 LRRC58Q96CX6 371 aa19.94■□□□□ 0.78
CLN3-230ENST00000568076 ZNF641Q96N77 438 aaPredicted RBP19.94■□□□□ 0.78
CLN3-230ENST00000568076 WBP1LQ9NX94 342 aa19.94■□□□□ 0.78
CLN3-230ENST00000568076 MBD1Q9UIS9 605 aaPredicted RBP19.94■□□□□ 0.78
CLN3-230ENST00000568076 TMPRSS11EQ9UL52 423 aa19.94■□□□□ 0.78
CLN3-230ENST00000568076 AP4S1Q9Y587 144 aa19.94■□□□□ 0.78
CLN3-230ENST00000568076 SYNCRIPO60506 623 aaKnown RBP19.94■□□□□ 0.78
CLN3-230ENST00000568076 DDX6P26196 483 aaKnown RBP eCLIP19.94■□□□□ 0.78
CLN3-230ENST00000568076 BMPR1AP36894 532 aa19.94■□□□□ 0.78
CLN3-230ENST00000568076 ZNF77Q15935 545 aa19.94■□□□□ 0.78
CLN3-230ENST00000568076 PAGE3Q5JUK9 113 aa19.94■□□□□ 0.78
CLN3-230ENST00000568076 LY6G5CQ5SRR4 150 aa19.94■□□□□ 0.78
CLN3-230ENST00000568076 BTBD9Q96Q07 612 aa19.94■□□□□ 0.78
CLN3-230ENST00000568076 COPS8Q99627 209 aa19.94■□□□□ 0.78
CLN3-230ENST00000568076 EGFL8Q99944 293 aa19.94■□□□□ 0.78
CLN3-230ENST00000568076 TRIM8Q9BZR9 551 aa19.94■□□□□ 0.78
CLN3-230ENST00000568076 PFDN4Q9NQP4 134 aa19.94■□□□□ 0.78
CLN3-230ENST00000568076 MTCL1Q9Y4B5 1905 aaKnown RBP19.93■□□□□ 0.78
CLN3-230ENST00000568076 KIAA0100Q14667 2235 aaKnown RBP19.93■□□□□ 0.78
CLN3-230ENST00000568076 IGLV3-16A0A075B6K0 115 aa19.93■□□□□ 0.78
CLN3-230ENST00000568076 OTCP00480 354 aa19.93■□□□□ 0.78
CLN3-230ENST00000568076 ZCCHC18P0CG32 403 aa19.93■□□□□ 0.78
CLN3-230ENST00000568076 ATP6V1B2P21281 511 aa19.93■□□□□ 0.78
CLN3-230ENST00000568076 CTNNB1P35222 781 aa19.93■□□□□ 0.78
CLN3-230ENST00000568076 KCNK10P57789 538 aa19.93■□□□□ 0.78
CLN3-230ENST00000568076 MED21Q13503 144 aa19.93■□□□□ 0.78
CLN3-230ENST00000568076 ABRAXAS2Q15018 415 aa19.93■□□□□ 0.78
CLN3-230ENST00000568076 ATP6AP1LQ52LC2 224 aa19.93■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms