RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 DHX9Q08211 1270 aaKnown RBP16.97■□□□□ 0.31
CLN3-217ENST00000565354 ITIH4Q14624 930 aa16.97■□□□□ 0.31
CLN3-217ENST00000565354 FNBP1LQ5T0N5 605 aa16.97■□□□□ 0.31
CLN3-217ENST00000565354 ARL10Q8N8L6 244 aa16.97■□□□□ 0.31
CLN3-217ENST00000565354 RASGEF1AQ8N9B8 481 aa16.97■□□□□ 0.31
CLN3-217ENST00000565354 ZDHHC1Q8WTX9 485 aa16.97■□□□□ 0.31
CLN3-217ENST00000565354 TIMM29Q9BSF4 260 aa16.97■□□□□ 0.31
CLN3-217ENST00000565354 THSD1Q9NS62 852 aa16.97■□□□□ 0.31
CLN3-217ENST00000565354 KLC4Q9NSK0 619 aa16.97■□□□□ 0.31
CLN3-217ENST00000565354 TREX1Q9NSU2 369 aa16.97■□□□□ 0.31
CLN3-217ENST00000565354 DNAJC16Q9Y2G8 782 aa16.97■□□□□ 0.31
CLN3-217ENST00000565354 SSUH2Q9Y2M2 353 aa16.97■□□□□ 0.31
CLN3-217ENST00000565354 PCYT1BQ9Y5K3 369 aaPredicted RBP16.97■□□□□ 0.31
CLN3-217ENST00000565354 RPS6KL1Q9Y6S9 549 aa16.97■□□□□ 0.31
CLN3-217ENST00000565354 BOD1L1Q8NFC6 3051 aa16.96■□□□□ 0.31
CLN3-217ENST00000565354 TRBV5-4A0A0C4DH59 114 aa16.96■□□□□ 0.31
CLN3-217ENST00000565354 FAM237BA0A1B0GVD1 139 aa16.96■□□□□ 0.31
CLN3-217ENST00000565354 PFDN6O15212 129 aa16.96■□□□□ 0.31
CLN3-217ENST00000565354 VAPBO95292 243 aa16.96■□□□□ 0.31
CLN3-217ENST00000565354 WISP1O95388 367 aa16.96■□□□□ 0.31
CLN3-217ENST00000565354 POLBP06746 335 aa16.96■□□□□ 0.31
CLN3-217ENST00000565354 GP1BAP07359 652 aa16.96■□□□□ 0.31
CLN3-217ENST00000565354 ATP1B2P14415 290 aaPredicted RBP16.96■□□□□ 0.31
CLN3-217ENST00000565354 DBN1Q16643 649 aa16.96■□□□□ 0.31
CLN3-217ENST00000565354 HIF1AQ16665 826 aa16.96■□□□□ 0.31
CLN3-217ENST00000565354 CERS6Q6ZMG9 384 aa16.96■□□□□ 0.31
CLN3-217ENST00000565354 MICALCLQ6ZW33 695 aa16.96■□□□□ 0.31
CLN3-217ENST00000565354 NRROSQ86YC3 692 aa16.96■□□□□ 0.31
CLN3-217ENST00000565354 KYQ8NBH2 561 aa16.96■□□□□ 0.31
CLN3-217ENST00000565354 SGF29Q96ES7 293 aa16.96■□□□□ 0.31
CLN3-217ENST00000565354 BOCQ9BWV1 1114 aa16.96■□□□□ 0.31
CLN3-217ENST00000565354 VPS37BQ9H9H4 285 aa16.96■□□□□ 0.31
CLN3-217ENST00000565354 WHRNQ9P202 907 aa16.96■□□□□ 0.31
CLN3-217ENST00000565354 COL27A1Q8IZC6 1860 aaPredicted RBP16.95■□□□□ 0.3
CLN3-217ENST00000565354 CPED1A4D0V7 1026 aa16.95■□□□□ 0.3
CLN3-217ENST00000565354 F8W8V4 182 aa16.95■□□□□ 0.3
CLN3-217ENST00000565354 CD3EAPO15446 510 aaKnown RBP16.95■□□□□ 0.3
CLN3-217ENST00000565354 SLC28A2O43868 658 aa16.95■□□□□ 0.3
CLN3-217ENST00000565354 POP7O75817 140 aaKnown RBP16.95■□□□□ 0.3
CLN3-217ENST00000565354 MYF5P13349 255 aa16.95■□□□□ 0.3
CLN3-217ENST00000565354 SLC2A4P14672 509 aa16.95■□□□□ 0.3
CLN3-217ENST00000565354 PGAM1P18669 254 aa16.95■□□□□ 0.3
CLN3-217ENST00000565354 NSG1P42857 185 aa16.95■□□□□ 0.3
CLN3-217ENST00000565354 MAGEA3P43357 314 aa16.95■□□□□ 0.3
CLN3-217ENST00000565354 CTSCP53634 463 aa16.95■□□□□ 0.3
CLN3-217ENST00000565354 THOC5Q13769 683 aaKnown RBP16.95■□□□□ 0.3
CLN3-217ENST00000565354 ANKRD20A4Q4UJ75 823 aa16.95■□□□□ 0.3
CLN3-217ENST00000565354 KIAA0930Q6ICG6 404 aaPredicted RBP16.95■□□□□ 0.3
CLN3-217ENST00000565354 MRNIPQ6NTE8 343 aa16.95■□□□□ 0.3
CLN3-217ENST00000565354 IGF2-ASQ6U949 168 aa16.95■□□□□ 0.3
CLN3-217ENST00000565354 SDCCAG8Q86SQ7 713 aaPredicted RBP16.95■□□□□ 0.3
CLN3-217ENST00000565354 AMZ2Q86W34 360 aa16.95■□□□□ 0.3
CLN3-217ENST00000565354 SLC35F3Q8IY50 421 aa16.95■□□□□ 0.3
CLN3-217ENST00000565354 PIANPQ8IYJ0 282 aa16.95■□□□□ 0.3
CLN3-217ENST00000565354 MMGT1Q8N4V1 131 aa16.95■□□□□ 0.3
CLN3-217ENST00000565354 SIGLEC10Q96LC7 697 aa16.95■□□□□ 0.3
CLN3-217ENST00000565354 NAT9Q9BTE0 207 aa16.95■□□□□ 0.3
CLN3-217ENST00000565354 LRRC1Q9BTT6 524 aa16.95■□□□□ 0.3
CLN3-217ENST00000565354 SPATS2LQ9NUQ6 558 aaKnown RBP16.95■□□□□ 0.3
CLN3-217ENST00000565354 PADI4Q9UM07 663 aa16.95■□□□□ 0.3
CLN3-217ENST00000565354 DNMT3AQ9Y6K1 912 aaPredicted RBP16.95■□□□□ 0.3
CLN3-217ENST00000565354 UBR5O95071 2799 aaPredicted RBP16.95■□□□□ 0.3
CLN3-217ENST00000565354 RP1P56715 2156 aa16.95■□□□□ 0.3
CLN3-217ENST00000565354 COL12A1Q99715 3063 aa16.95■□□□□ 0.3
CLN3-217ENST00000565354 TLN1Q9Y490 2541 aaKnown RBP16.94■□□□□ 0.3
CLN3-217ENST00000565354 PDZK1P1A8MUH7 402 aa16.94■□□□□ 0.3
CLN3-217ENST00000565354 QSOX1O00391 747 aa16.94■□□□□ 0.3
CLN3-217ENST00000565354 KCNJ13O60928 360 aa16.94■□□□□ 0.3
CLN3-217ENST00000565354 BANF1O75531 89 aa16.94■□□□□ 0.3
CLN3-217ENST00000565354 USP1O94782 785 aa16.94■□□□□ 0.3
CLN3-217ENST00000565354 TTPAP49638 278 aa16.94■□□□□ 0.3
CLN3-217ENST00000565354 SLC7A5Q01650 507 aa16.94■□□□□ 0.3
CLN3-217ENST00000565354 CAV1Q03135 178 aa16.94■□□□□ 0.3
CLN3-217ENST00000565354 C14orf28Q4W4Y0 310 aa16.94■□□□□ 0.3
CLN3-217ENST00000565354 DUPD1Q68J44 220 aa16.94■□□□□ 0.3
CLN3-217ENST00000565354 EFL1Q7Z2Z2 1120 aaKnown RBP16.94■□□□□ 0.3
CLN3-217ENST00000565354 ZNF547Q8IVP9 402 aa16.94■□□□□ 0.3
CLN3-217ENST00000565354 IFI44Q8TCB0 444 aa16.94■□□□□ 0.3
CLN3-217ENST00000565354 NAT6Q93015 286 aa16.94■□□□□ 0.3
CLN3-217ENST00000565354 SGSM3Q96HU1 749 aa16.94■□□□□ 0.3
CLN3-217ENST00000565354 EBNA1BP2Q99848 306 aaKnown RBP16.94■□□□□ 0.3
CLN3-217ENST00000565354 CARD6Q9BX69 1037 aa16.94■□□□□ 0.3
CLN3-217ENST00000565354 ABCG4Q9H172 646 aa16.94■□□□□ 0.3
CLN3-217ENST00000565354 STN1Q9H668 368 aaKnown RBP16.94■□□□□ 0.3
CLN3-217ENST00000565354 FAM8A1Q9UBU6 413 aa16.94■□□□□ 0.3
CLN3-217ENST00000565354 LY6G6EA0A0G2JKS1 128 aa16.93■□□□□ 0.3
CLN3-217ENST00000565354 GOLGA8KD6RF30 607 aa16.93■□□□□ 0.3
CLN3-217ENST00000565354 GOLGA8TH3BQL2 631 aa16.93■□□□□ 0.3
CLN3-217ENST00000565354 K7ENP7 123 aa16.93■□□□□ 0.3
CLN3-217ENST00000565354 NDUFS3O75489 264 aa16.93■□□□□ 0.3
CLN3-217ENST00000565354 AP2A2O94973 939 aa16.93■□□□□ 0.3
CLN3-217ENST00000565354 TTC4O95801 387 aa16.93■□□□□ 0.3
CLN3-217ENST00000565354 OR56A5P0C7T3 313 aa16.93■□□□□ 0.3
CLN3-217ENST00000565354 IDSP22304 550 aa16.93■□□□□ 0.3
CLN3-217ENST00000565354 PLTPP55058 493 aa16.93■□□□□ 0.3
CLN3-217ENST00000565354 B4GALNT1Q00973 533 aa16.93■□□□□ 0.3
CLN3-217ENST00000565354 PDIA2Q13087 525 aaKnown RBP16.93■□□□□ 0.3
CLN3-217ENST00000565354 SEPT7Q16181 437 aaKnown RBP16.93■□□□□ 0.3
CLN3-217ENST00000565354 LONRF1Q17RB8 773 aa16.93■□□□□ 0.3
CLN3-217ENST00000565354 BCL7AQ4VC05 210 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms