RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 ANLNQ9NQW6 1124 aa9.11□□□□□ -0.95
VPS39-205ENST00000562258 POLG2Q9UHN1 485 aa9.11□□□□□ -0.95
VPS39-205ENST00000562258 PSME2Q9UL46 239 aa9.11□□□□□ -0.95
VPS39-205ENST00000562258 SNX6Q9UNH7 406 aa9.11□□□□□ -0.95
VPS39-205ENST00000562258 A0A088AWK7 358 aa9.11□□□□□ -0.95
VPS39-205ENST00000562258 MYO1GB0I1T2 1018 aa9.11□□□□□ -0.95
VPS39-205ENST00000562258 SAP18O00422 153 aaKnown RBP9.11□□□□□ -0.95
VPS39-205ENST00000562258 LILRB3O75022 631 aa9.11□□□□□ -0.95
VPS39-205ENST00000562258 EPOP01588 193 aa9.11□□□□□ -0.95
VPS39-205ENST00000562258 HGFP14210 728 aa9.11□□□□□ -0.95
VPS39-205ENST00000562258 POLR2CP19387 275 aaPredicted RBP9.11□□□□□ -0.95
VPS39-205ENST00000562258 ZNF10P21506 573 aaPredicted RBP9.11□□□□□ -0.95
VPS39-205ENST00000562258 TLX1P31314 330 aaPredicted RBP9.11□□□□□ -0.95
VPS39-205ENST00000562258 SPIDRQ14159 915 aa9.11□□□□□ -0.95
VPS39-205ENST00000562258 TRABD2AQ86V40 505 aa9.11□□□□□ -0.95
VPS39-205ENST00000562258 NXPE1Q8N323 547 aa9.11□□□□□ -0.95
VPS39-205ENST00000562258 CPXM2Q8N436 756 aa9.11□□□□□ -0.95
VPS39-205ENST00000562258 DTX3LQ8TDB6 740 aa9.11□□□□□ -0.95
VPS39-205ENST00000562258 NXPE3Q969Y0 559 aa9.11□□□□□ -0.95
VPS39-205ENST00000562258 RELTQ969Z4 430 aa9.11□□□□□ -0.95
VPS39-205ENST00000562258 LRIG1Q96JA1 1093 aa9.11□□□□□ -0.95
VPS39-205ENST00000562258 MAGEB18Q96M61 343 aa9.11□□□□□ -0.95
VPS39-205ENST00000562258 DNAJC11Q9NVH1 559 aa9.11□□□□□ -0.95
VPS39-205ENST00000562258 SPO11Q9Y5K1 396 aa9.11□□□□□ -0.95
VPS39-205ENST00000562258 MYO10Q9HD67 2058 aa9.11□□□□□ -0.95
VPS39-205ENST00000562258 C9JVG2 144 aa9.11□□□□□ -0.95
VPS39-205ENST00000562258 KLHL2O95198 593 aa9.11□□□□□ -0.95
VPS39-205ENST00000562258 EFNA1P20827 205 aaPredicted RBP9.11□□□□□ -0.95
VPS39-205ENST00000562258 TARSP26639 723 aaKnown RBP9.11□□□□□ -0.95
VPS39-205ENST00000562258 MAPK1P28482 360 aa9.11□□□□□ -0.95
VPS39-205ENST00000562258 KRT20P35900 424 aa9.11□□□□□ -0.95
VPS39-205ENST00000562258 TERF2Q15554 542 aa9.11□□□□□ -0.95
VPS39-205ENST00000562258 LRRC36Q1X8D7 754 aa9.11□□□□□ -0.95
VPS39-205ENST00000562258 CLEC6AQ6EIG7 209 aa9.11□□□□□ -0.95
VPS39-205ENST00000562258 PSAPL1Q6NUJ1 521 aa9.11□□□□□ -0.95
VPS39-205ENST00000562258 PLD3Q8IV08 490 aa9.11□□□□□ -0.95
VPS39-205ENST00000562258 ARHGAP12Q8IWW6 846 aa9.11□□□□□ -0.95
VPS39-205ENST00000562258 CEP70Q8NHQ1 597 aa9.11□□□□□ -0.95
VPS39-205ENST00000562258 EEF1AKMT1Q8WVE0 214 aa9.11□□□□□ -0.95
VPS39-205ENST00000562258 REPS1Q96D71 796 aa9.11□□□□□ -0.95
VPS39-205ENST00000562258 CMTM5Q96DZ9 223 aa9.11□□□□□ -0.95
VPS39-205ENST00000562258 VMP1Q96GC9 406 aa9.11□□□□□ -0.95
VPS39-205ENST00000562258 HIC2Q96JB3 615 aa9.11□□□□□ -0.95
VPS39-205ENST00000562258 SIGLEC10Q96LC7 697 aa9.11□□□□□ -0.95
VPS39-205ENST00000562258 WDR92Q96MX6 357 aa9.11□□□□□ -0.95
VPS39-205ENST00000562258 AIF1LQ9BQI0 150 aa9.11□□□□□ -0.95
VPS39-205ENST00000562258 NUSAP1Q9BXS6 441 aaKnown RBP9.11□□□□□ -0.95
VPS39-205ENST00000562258 ARFGEF1Q9Y6D6 1849 aa9.11□□□□□ -0.95
VPS39-205ENST00000562258 PRRT4C9JH25 899 aa9.1□□□□□ -0.95
VPS39-205ENST00000562258 CDC7O00311 574 aa9.1□□□□□ -0.95
VPS39-205ENST00000562258 RGS14O43566 566 aa9.1□□□□□ -0.95
VPS39-205ENST00000562258 NARSO43776 548 aaKnown RBP9.1□□□□□ -0.95
VPS39-205ENST00000562258 ZNF217O75362 1048 aa9.1□□□□□ -0.95
VPS39-205ENST00000562258 ARHGEF15O94989 841 aa9.1□□□□□ -0.95
VPS39-205ENST00000562258 APBB3O95704 486 aa9.1□□□□□ -0.95
VPS39-205ENST00000562258 TOP3BO95985 862 aaKnown RBP9.1□□□□□ -0.95
VPS39-205ENST00000562258 OTCP00480 354 aa9.1□□□□□ -0.95
VPS39-205ENST00000562258 COX7A2P14406 83 aa9.1□□□□□ -0.95
VPS39-205ENST00000562258 GMPRP36959 345 aa9.1□□□□□ -0.95
VPS39-205ENST00000562258 BDKRB1P46663 353 aa9.1□□□□□ -0.95
VPS39-205ENST00000562258 RGS1Q08116 209 aa9.1□□□□□ -0.95
VPS39-205ENST00000562258 CCINQ13939 588 aa9.1□□□□□ -0.95
VPS39-205ENST00000562258 KCNJ11Q14654 390 aa9.1□□□□□ -0.95
VPS39-205ENST00000562258 MPP7Q5T2T1 576 aa9.1□□□□□ -0.95
VPS39-205ENST00000562258 NAIF1Q69YI7 327 aaPredicted RBP9.1□□□□□ -0.95
VPS39-205ENST00000562258 PARS2Q7L3T8 475 aaKnown RBP9.1□□□□□ -0.95
VPS39-205ENST00000562258 SPATS2Q86XZ4 545 aaKnown RBP9.1□□□□□ -0.95
VPS39-205ENST00000562258 C10orf53Q8N6V4 93 aa9.1□□□□□ -0.95
VPS39-205ENST00000562258 ICA1LQ8NDH6 482 aa9.1□□□□□ -0.95
VPS39-205ENST00000562258 RAB7BQ96AH8 199 aa9.1□□□□□ -0.95
VPS39-205ENST00000562258 SCRN2Q96FV2 425 aa9.1□□□□□ -0.95
VPS39-205ENST00000562258 DPYSL5Q9BPU6 564 aa9.1□□□□□ -0.95
VPS39-205ENST00000562258 TBCDQ9BTW9 1192 aa9.1□□□□□ -0.95
VPS39-205ENST00000562258 WDR55Q9H6Y2 383 aaPredicted RBP9.1□□□□□ -0.95
VPS39-205ENST00000562258 EIF2B3Q9NR50 452 aaKnown RBP9.1□□□□□ -0.95
VPS39-205ENST00000562258 MARCH4Q9P2E8 410 aaPredicted RBP9.1□□□□□ -0.95
VPS39-205ENST00000562258 PPM1HQ9ULR3 514 aa9.1□□□□□ -0.95
VPS39-205ENST00000562258 ENTPD4Q9Y227 616 aa9.1□□□□□ -0.95
VPS39-205ENST00000562258 CDKN1CP49918 316 aaPredicted RBP9.1□□□□□ -0.95
VPS39-205ENST00000562258 RPL14P50914 215 aaKnown RBP9.1□□□□□ -0.95
VPS39-205ENST00000562258 IRF9Q00978 393 aa9.1□□□□□ -0.95
VPS39-205ENST00000562258 SYCE2Q6PIF2 218 aa9.1□□□□□ -0.95
VPS39-205ENST00000562258 RGS9BPQ6ZS82 235 aa9.1□□□□□ -0.95
VPS39-205ENST00000562258 RTL10Q7L3V2 364 aa9.1□□□□□ -0.95
VPS39-205ENST00000562258 CAND1Q86VP6 1230 aaKnown RBP9.1□□□□□ -0.95
VPS39-205ENST00000562258 HORMAD1Q86X24 394 aa9.1□□□□□ -0.95
VPS39-205ENST00000562258 CAMKK1Q8N5S9 505 aa9.1□□□□□ -0.95
VPS39-205ENST00000562258 FOXJ1Q92949 421 aa9.1□□□□□ -0.95
VPS39-205ENST00000562258 CDK15Q96Q40 435 aa9.1□□□□□ -0.95
VPS39-205ENST00000562258 PACSIN3Q9UKS6 424 aa9.1□□□□□ -0.95
VPS39-205ENST00000562258 ORC6Q9Y5N6 252 aa9.1□□□□□ -0.95
VPS39-205ENST00000562258 IRAK3Q9Y616 596 aa9.1□□□□□ -0.95
VPS39-205ENST00000562258 ABHD2P08910 425 aa9.1□□□□□ -0.95
VPS39-205ENST00000562258 EPORP19235 508 aa9.1□□□□□ -0.95
VPS39-205ENST00000562258 ARHGDIAP52565 204 aa9.1□□□□□ -0.95
VPS39-205ENST00000562258 HYAL2Q12891 473 aa9.1□□□□□ -0.95
VPS39-205ENST00000562258 AASDHQ4L235 1098 aaPredicted RBP9.1□□□□□ -0.95
VPS39-205ENST00000562258 LILRA6Q6PI73 481 aa9.1□□□□□ -0.95
VPS39-205ENST00000562258 SPOCK2Q92563 424 aa9.1□□□□□ -0.95
VPS39-205ENST00000562258 UBE2E3Q969T4 207 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms