RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 TCEAL2Q9H3H9 227 aaPredicted RBP11.65□□□□□ -0.54
LDLR-212ENST00000560467 BPIFA1Q9NP55 256 aa11.65□□□□□ -0.54
LDLR-212ENST00000560467 SENP1Q9P0U3 644 aa11.65□□□□□ -0.54
LDLR-212ENST00000560467 SLC2A6Q9UGQ3 507 aa11.65□□□□□ -0.54
LDLR-212ENST00000560467 GGT7Q9UJ14 662 aa11.65□□□□□ -0.54
LDLR-212ENST00000560467 CRLS1Q9UJA2 301 aa11.65□□□□□ -0.54
LDLR-212ENST00000560467 ITM2BQ9Y287 266 aa11.65□□□□□ -0.54
LDLR-212ENST00000560467 SSUH2Q9Y2M2 353 aa11.65□□□□□ -0.54
LDLR-212ENST00000560467 ENTPD2Q9Y5L3 495 aa11.65□□□□□ -0.54
LDLR-212ENST00000560467 FADS3Q9Y5Q0 445 aa11.65□□□□□ -0.54
LDLR-212ENST00000560467 HS3ST3A1Q9Y663 406 aa11.65□□□□□ -0.54
LDLR-212ENST00000560467 DOCK9Q9BZ29 2069 aa11.64□□□□□ -0.55
LDLR-212ENST00000560467 CCDC162PA2VCL2 907 aa11.64□□□□□ -0.55
LDLR-212ENST00000560467 IGLON5A6NGN9 336 aa11.64□□□□□ -0.55
LDLR-212ENST00000560467 B8ZZF3 427 aa11.64□□□□□ -0.55
LDLR-212ENST00000560467 CFAP99D6REC4 459 aa11.64□□□□□ -0.55
LDLR-212ENST00000560467 H7C0S8 307 aa11.64□□□□□ -0.55
LDLR-212ENST00000560467 AURKAO14965 403 aa11.64□□□□□ -0.55
LDLR-212ENST00000560467 AQP9O43315 295 aa11.64□□□□□ -0.55
LDLR-212ENST00000560467 AP1G1O43747 822 aa11.64□□□□□ -0.55
LDLR-212ENST00000560467 GOT2P00505 430 aaKnown RBP11.64□□□□□ -0.55
LDLR-212ENST00000560467 PRKCGP05129 697 aa11.64□□□□□ -0.55
LDLR-212ENST00000560467 JUNDP17535 347 aa11.64□□□□□ -0.55
LDLR-212ENST00000560467 OGNP20774 298 aaKnown RBP11.64□□□□□ -0.55
LDLR-212ENST00000560467 RABIFP47224 123 aa11.64□□□□□ -0.55
LDLR-212ENST00000560467 PDX1P52945 283 aa11.64□□□□□ -0.55
LDLR-212ENST00000560467 TMED2Q15363 201 aa11.64□□□□□ -0.55
LDLR-212ENST00000560467 NR0B2Q15466 257 aa11.64□□□□□ -0.55
LDLR-212ENST00000560467 TMEM52BQ4KMG9 183 aa11.64□□□□□ -0.55
LDLR-212ENST00000560467 TRMT10BQ6PF06 316 aaKnown RBP11.64□□□□□ -0.55
LDLR-212ENST00000560467 ADGRD1Q6QNK2 874 aa11.64□□□□□ -0.55
LDLR-212ENST00000560467 IGF2-ASQ6U949 168 aa11.64□□□□□ -0.55
LDLR-212ENST00000560467 RBM44Q6ZP01 1051 aaKnown RBP11.64□□□□□ -0.55
LDLR-212ENST00000560467 SNX20Q7Z614 316 aa11.64□□□□□ -0.55
LDLR-212ENST00000560467 DCP2Q8IU60 420 aaKnown RBP11.64□□□□□ -0.55
LDLR-212ENST00000560467 TTC30BQ8N4P2 665 aa11.64□□□□□ -0.55
LDLR-212ENST00000560467 OR13C4Q8NGS5 318 aa11.64□□□□□ -0.55
LDLR-212ENST00000560467 OR13J1Q8NGT2 312 aa11.64□□□□□ -0.55
LDLR-212ENST00000560467 GPR150Q8NGU9 434 aa11.64□□□□□ -0.55
LDLR-212ENST00000560467 ZNF398Q8TD17 642 aa11.64□□□□□ -0.55
LDLR-212ENST00000560467 EPS8L3Q8TE67 593 aaKnown RBP11.64□□□□□ -0.55
LDLR-212ENST00000560467 HEXDCQ8WVB3 486 aa11.64□□□□□ -0.55
LDLR-212ENST00000560467 TSPAN17Q96FV3 270 aa11.64□□□□□ -0.55
LDLR-212ENST00000560467 DCUN1D1Q96GG9 259 aa11.64□□□□□ -0.55
LDLR-212ENST00000560467 VPS39Q96JC1 886 aa11.64□□□□□ -0.55
LDLR-212ENST00000560467 ZNF778Q96MU6 729 aa11.64□□□□□ -0.55
LDLR-212ENST00000560467 TSNARE1Q96NA8 513 aa11.64□□□□□ -0.55
LDLR-212ENST00000560467 SMC6Q96SB8 1091 aa11.64□□□□□ -0.55
LDLR-212ENST00000560467 KLF6Q99612 283 aaPredicted RBP11.64□□□□□ -0.55
LDLR-212ENST00000560467 WDR83Q9BRX9 315 aaKnown RBP11.64□□□□□ -0.55
LDLR-212ENST00000560467 WRAP53Q9BUR4 548 aaKnown RBP11.64□□□□□ -0.55
LDLR-212ENST00000560467 ASB8Q9H765 288 aa11.64□□□□□ -0.55
LDLR-212ENST00000560467 INTS10Q9NVR2 710 aaKnown RBP11.64□□□□□ -0.55
LDLR-212ENST00000560467 TBK1Q9UHD2 729 aa11.64□□□□□ -0.55
LDLR-212ENST00000560467 FBXO5Q9UKT4 447 aa11.64□□□□□ -0.55
LDLR-212ENST00000560467 CORO1CQ9ULV4 474 aaPredicted RBP11.64□□□□□ -0.55
LDLR-212ENST00000560467 KCTD3Q9Y597 815 aa11.64□□□□□ -0.55
LDLR-212ENST00000560467 NFS1Q9Y697 457 aa11.64□□□□□ -0.55
LDLR-212ENST00000560467 CHD5Q8TDI0 1954 aa11.64□□□□□ -0.55
LDLR-212ENST00000560467 CDRT15L2A8MXV6 281 aa11.63□□□□□ -0.55
LDLR-212ENST00000560467 GOLGA8TH3BQL2 631 aa11.63□□□□□ -0.55
LDLR-212ENST00000560467 K7ENP7 123 aa11.63□□□□□ -0.55
LDLR-212ENST00000560467 SLC28A2O43868 658 aa11.63□□□□□ -0.55
LDLR-212ENST00000560467 SASH3O75995 380 aa11.63□□□□□ -0.55
LDLR-212ENST00000560467 TM7SF2O76062 418 aa11.63□□□□□ -0.55
LDLR-212ENST00000560467 SRP72O76094 671 aaKnown RBP11.63□□□□□ -0.55
LDLR-212ENST00000560467 PRAMEF1O95521 474 aa11.63□□□□□ -0.55
LDLR-212ENST00000560467 ZNF7P17097 686 aaPredicted RBP11.63□□□□□ -0.55
LDLR-212ENST00000560467 MMP12P39900 470 aa11.63□□□□□ -0.55
LDLR-212ENST00000560467 ARCN1P48444 511 aaKnown RBP11.63□□□□□ -0.55
LDLR-212ENST00000560467 CD151P48509 253 aa11.63□□□□□ -0.55
LDLR-212ENST00000560467 SPINT3P49223 89 aa11.63□□□□□ -0.55
LDLR-212ENST00000560467 STC1P52823 247 aa11.63□□□□□ -0.55
LDLR-212ENST00000560467 PTSQ03393 145 aa11.63□□□□□ -0.55
LDLR-212ENST00000560467 CLN3Q13286 438 aa11.63□□□□□ -0.55
LDLR-212ENST00000560467 C1orf61Q13536 156 aa11.63□□□□□ -0.55
LDLR-212ENST00000560467 LRRC73Q5JTD7 316 aa11.63□□□□□ -0.55
LDLR-212ENST00000560467 TEDDM1Q5T9Z0 273 aa11.63□□□□□ -0.55
LDLR-212ENST00000560467 AGBL2Q5U5Z8 902 aa11.63□□□□□ -0.55
LDLR-212ENST00000560467 INO80CQ6PI98 192 aaPredicted RBP11.63□□□□□ -0.55
LDLR-212ENST00000560467 FAM151BQ6UXP7 276 aa11.63□□□□□ -0.55
LDLR-212ENST00000560467 PACS1Q6VY07 963 aa11.63□□□□□ -0.55
LDLR-212ENST00000560467 ZSWIM9Q86XI8 627 aa11.63□□□□□ -0.55
LDLR-212ENST00000560467 CNTN4Q8IWV2 1026 aa11.63□□□□□ -0.55
LDLR-212ENST00000560467 SLC35F3Q8IY50 421 aa11.63□□□□□ -0.55
LDLR-212ENST00000560467 ARFGAP2Q8N6H7 521 aa11.63□□□□□ -0.55
LDLR-212ENST00000560467 GDAP1Q8TB36 358 aa11.63□□□□□ -0.55
LDLR-212ENST00000560467 FAM174AQ8TBP5 190 aa11.63□□□□□ -0.55
LDLR-212ENST00000560467 DTX3LQ8TDB6 740 aa11.63□□□□□ -0.55
LDLR-212ENST00000560467 MED8Q96G25 268 aa11.63□□□□□ -0.55
LDLR-212ENST00000560467 ATP6V1G3Q96LB4 118 aa11.63□□□□□ -0.55
LDLR-212ENST00000560467 TRIM56Q9BRZ2 755 aaKnown RBP11.63□□□□□ -0.55
LDLR-212ENST00000560467 ZSCAN5AQ9BUG6 496 aa11.63□□□□□ -0.55
LDLR-212ENST00000560467 SPATA16Q9BXB7 569 aa11.63□□□□□ -0.55
LDLR-212ENST00000560467 IQCGQ9H095 443 aaKnown RBP11.63□□□□□ -0.55
LDLR-212ENST00000560467 CLMPQ9H6B4 373 aa11.63□□□□□ -0.55
LDLR-212ENST00000560467 SUDS3Q9H7L9 328 aaPredicted RBP11.63□□□□□ -0.55
LDLR-212ENST00000560467 SYNDIG1Q9H7V2 258 aa11.63□□□□□ -0.55
LDLR-212ENST00000560467 TMBIM4Q9HC24 238 aa11.63□□□□□ -0.55
LDLR-212ENST00000560467 NCKIPSDQ9NZQ3 722 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms