RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	AGAP3	Q96P47	875 aa		12.36	□□□□□ -0.43
SHMT2-223	ENST00000556689	SMAD5	Q99717	465 aa	Known RBP	12.36	□□□□□ -0.43
SHMT2-223	ENST00000556689	SLC25A51	Q9H1U9	297 aa		12.36	□□□□□ -0.43
SHMT2-223	ENST00000556689	LATS2	Q9NRM7	1088 aa		12.36	□□□□□ -0.43
SHMT2-223	ENST00000556689	GPR83	Q9NYM4	423 aa		12.36	□□□□□ -0.43
SHMT2-223	ENST00000556689	SLC5A6	Q9Y289	635 aa		12.36	□□□□□ -0.43
SHMT2-223	ENST00000556689	CACNA1D	Q01668	2161 aa		12.36	□□□□□ -0.43
SHMT2-223	ENST00000556689	RP1L1	Q8IWN7	2480 aa	Predicted RBP	12.35	□□□□□ -0.43
SHMT2-223	ENST00000556689	GOLGA6L19	H0YKK7	550 aa		12.35	□□□□□ -0.43
SHMT2-223	ENST00000556689	KRT86	O43790	486 aa		12.35	□□□□□ -0.43
SHMT2-223	ENST00000556689	NDST3	O95803	873 aa		12.35	□□□□□ -0.43
SHMT2-223	ENST00000556689	LDLR	P01130	860 aa		12.35	□□□□□ -0.43
SHMT2-223	ENST00000556689	XRCC4	Q13426	336 aa		12.35	□□□□□ -0.43
SHMT2-223	ENST00000556689	PLEKHN1	Q494U1	663 aa	Predicted RBP	12.35	□□□□□ -0.43
SHMT2-223	ENST00000556689	FAM182A	Q5T1J6	154 aa		12.35	□□□□□ -0.43
SHMT2-223	ENST00000556689	ZFYVE27	Q5T4F4	411 aa		12.35	□□□□□ -0.43
SHMT2-223	ENST00000556689	PRAMEF17	Q5VTA0	474 aa		12.35	□□□□□ -0.43
SHMT2-223	ENST00000556689	ZDHHC20	Q5W0Z9	365 aa		12.35	□□□□□ -0.43
SHMT2-223	ENST00000556689	METRNL	Q641Q3	311 aa		12.35	□□□□□ -0.43
SHMT2-223	ENST00000556689	TMEM220	Q6QAJ8	160 aa		12.35	□□□□□ -0.43
SHMT2-223	ENST00000556689	FAM83H	Q6ZRV2	1179 aa	Predicted RBP	12.35	□□□□□ -0.43
SHMT2-223	ENST00000556689	CARF	Q8N187	725 aa		12.35	□□□□□ -0.43
SHMT2-223	ENST00000556689	ZBTB2	Q8N680	514 aa		12.35	□□□□□ -0.43
SHMT2-223	ENST00000556689	BEND7	Q8N7W2	519 aa	Predicted RBP	12.35	□□□□□ -0.43
SHMT2-223	ENST00000556689	RASGEF1A	Q8N9B8	481 aa		12.35	□□□□□ -0.43
SHMT2-223	ENST00000556689	TADA1	Q96BN2	335 aa		12.35	□□□□□ -0.43
SHMT2-223	ENST00000556689	SNRNP40	Q96DI7	357 aa	Known RBP	12.35	□□□□□ -0.43
SHMT2-223	ENST00000556689	CLIP3	Q96DZ5	547 aa		12.35	□□□□□ -0.43
SHMT2-223	ENST00000556689	C5orf34	Q96MH7	638 aa		12.35	□□□□□ -0.43
SHMT2-223	ENST00000556689	RNF157	Q96PX1	679 aa		12.35	□□□□□ -0.43
SHMT2-223	ENST00000556689	CEP41	Q9BYV8	373 aa		12.35	□□□□□ -0.43
SHMT2-223	ENST00000556689	ZCCHC2	Q9C0B9	1178 aa	Known RBP	12.35	□□□□□ -0.43
SHMT2-223	ENST00000556689	FANCE	Q9HB96	536 aa		12.35	□□□□□ -0.43
SHMT2-223	ENST00000556689	IL26	Q9NPH9	171 aa		12.35	□□□□□ -0.43
SHMT2-223	ENST00000556689	IMP3	Q9NV31	184 aa	Known RBP	12.35	□□□□□ -0.43
SHMT2-223	ENST00000556689	SOHLH2	Q9NX45	425 aa		12.35	□□□□□ -0.43
SHMT2-223	ENST00000556689	IGF2BP1	Q9NZI8	577 aa	Known RBP eCLIP	12.35	□□□□□ -0.43
SHMT2-223	ENST00000556689	C5AR2	Q9P296	337 aa		12.35	□□□□□ -0.43
SHMT2-223	ENST00000556689	HEY1	Q9Y5J3	304 aa		12.35	□□□□□ -0.43
SHMT2-223	ENST00000556689	CFAP20	Q9Y6A4	193 aa	Known RBP	12.35	□□□□□ -0.43
SHMT2-223	ENST00000556689	CELSR2	Q9HCU4	2923 aa		12.34	□□□□□ -0.43
SHMT2-223	ENST00000556689	OR6C74	A6NCV1	312 aa		12.34	□□□□□ -0.43
SHMT2-223	ENST00000556689	UGT1A9	O60656	530 aa		12.34	□□□□□ -0.43
SHMT2-223	ENST00000556689	PROSC	O94903	275 aa		12.34	□□□□□ -0.43
SHMT2-223	ENST00000556689	MT-CYB	P00156	380 aa	Predicted RBP	12.34	□□□□□ -0.43
SHMT2-223	ENST00000556689	MTHFD1	P11586	935 aa	Known RBP	12.34	□□□□□ -0.43
SHMT2-223	ENST00000556689	UGT1A6	P19224	532 aa		12.34	□□□□□ -0.43
SHMT2-223	ENST00000556689	UGT1A1	P22309	533 aa		12.34	□□□□□ -0.43
SHMT2-223	ENST00000556689	UGT1A4	P22310	534 aa		12.34	□□□□□ -0.43
SHMT2-223	ENST00000556689	KDELR1	P24390	212 aa		12.34	□□□□□ -0.43
SHMT2-223	ENST00000556689	HMGCL	P35914	325 aa		12.34	□□□□□ -0.43
SHMT2-223	ENST00000556689	TAS2R40	P59535	323 aa		12.34	□□□□□ -0.43
SHMT2-223	ENST00000556689	NFE2L1	Q14494	772 aa		12.34	□□□□□ -0.43
SHMT2-223	ENST00000556689	ANO6	Q4KMQ2	910 aa		12.34	□□□□□ -0.43
SHMT2-223	ENST00000556689	ZRANB3	Q5FWF4	1079 aa		12.34	□□□□□ -0.43
SHMT2-223	ENST00000556689	LDLRAP1	Q5SW96	308 aa		12.34	□□□□□ -0.43
SHMT2-223	ENST00000556689	FAM69B	Q5VUD6	431 aa		12.34	□□□□□ -0.43
SHMT2-223	ENST00000556689	HGSNAT	Q68CP4	663 aa		12.34	□□□□□ -0.43
SHMT2-223	ENST00000556689	ALKBH5	Q6P6C2	394 aa	Known RBP	12.34	□□□□□ -0.43
SHMT2-223	ENST00000556689	CPNE8	Q86YQ8	564 aa		12.34	□□□□□ -0.43
SHMT2-223	ENST00000556689	TICAM1	Q8IUC6	712 aa		12.34	□□□□□ -0.43
SHMT2-223	ENST00000556689	IQCK	Q8N0W5	287 aa		12.34	□□□□□ -0.43
SHMT2-223	ENST00000556689	CISD2	Q8N5K1	135 aa	Known RBP	12.34	□□□□□ -0.43
SHMT2-223	ENST00000556689	TTC13	Q8NBP0	860 aa		12.34	□□□□□ -0.43
SHMT2-223	ENST00000556689	SPATA22	Q8NHS9	363 aa		12.34	□□□□□ -0.43
SHMT2-223	ENST00000556689	DTX3L	Q8TDB6	740 aa		12.34	□□□□□ -0.43
SHMT2-223	ENST00000556689	RAPGEF5	Q92565	580 aa		12.34	□□□□□ -0.43
SHMT2-223	ENST00000556689	SGSM3	Q96HU1	749 aa		12.34	□□□□□ -0.43
SHMT2-223	ENST00000556689	NAP1L5	Q96NT1	182 aa	Predicted RBP	12.34	□□□□□ -0.43
SHMT2-223	ENST00000556689	INSM2	Q96T92	566 aa	Predicted RBP	12.34	□□□□□ -0.43
SHMT2-223	ENST00000556689	TRABD	Q9H4I3	376 aa		12.34	□□□□□ -0.43
SHMT2-223	ENST00000556689	UGT1A7	Q9HAW7	530 aa		12.34	□□□□□ -0.43
SHMT2-223	ENST00000556689	UGT1A10	Q9HAW8	530 aa		12.34	□□□□□ -0.43
SHMT2-223	ENST00000556689	UGT1A8	Q9HAW9	530 aa		12.34	□□□□□ -0.43
SHMT2-223	ENST00000556689	ASF1B	Q9NVP2	202 aa		12.34	□□□□□ -0.43
SHMT2-223	ENST00000556689	BTRC	Q9Y297	605 aa		12.34	□□□□□ -0.43
SHMT2-223	ENST00000556689	SPO11	Q9Y5K1	396 aa		12.34	□□□□□ -0.43
SHMT2-223	ENST00000556689	CRYBG3	Q68DQ2	2970 aa		12.33	□□□□□ -0.43
SHMT2-223	ENST00000556689		A0A087X0T9	212 aa		12.33	□□□□□ -0.44
SHMT2-223	ENST00000556689	SMTNL1	A8MU46	457 aa		12.33	□□□□□ -0.44
SHMT2-223	ENST00000556689	PMPCB	O75439	489 aa		12.33	□□□□□ -0.44
SHMT2-223	ENST00000556689	SERPING1	P05155	500 aa		12.33	□□□□□ -0.44
SHMT2-223	ENST00000556689	CAPN1	P07384	714 aa		12.33	□□□□□ -0.44
SHMT2-223	ENST00000556689	FAM228B	P0C875	321 aa		12.33	□□□□□ -0.44
SHMT2-223	ENST00000556689	PBLD	P30039	288 aa	Predicted RBP	12.33	□□□□□ -0.44
SHMT2-223	ENST00000556689	RORA	P35398	523 aa		12.33	□□□□□ -0.44
SHMT2-223	ENST00000556689	KPNA2	P52292	529 aa	Known RBP	12.33	□□□□□ -0.44
SHMT2-223	ENST00000556689	CTSC	P53634	463 aa		12.33	□□□□□ -0.44
SHMT2-223	ENST00000556689	ADCY2	Q08462	1091 aa		12.33	□□□□□ -0.44
SHMT2-223	ENST00000556689	RAPSN	Q13702	412 aa		12.33	□□□□□ -0.44
SHMT2-223	ENST00000556689	ELOA	Q14241	798 aa	Known RBP	12.33	□□□□□ -0.44
SHMT2-223	ENST00000556689	PDK1	Q15118	436 aa		12.33	□□□□□ -0.44
SHMT2-223	ENST00000556689	SLC14A2	Q15849	920 aa		12.33	□□□□□ -0.44
SHMT2-223	ENST00000556689	PPP2R5E	Q16537	467 aa		12.33	□□□□□ -0.44
SHMT2-223	ENST00000556689	FIGN	Q5HY92	759 aa		12.33	□□□□□ -0.44
SHMT2-223	ENST00000556689	VWA5B1	Q5TIE3	1220 aa		12.33	□□□□□ -0.44
SHMT2-223	ENST00000556689	FBXO38	Q6PIJ6	1188 aa		12.33	□□□□□ -0.44
SHMT2-223	ENST00000556689	SYN2	Q92777	582 aa	Predicted RBP	12.33	□□□□□ -0.44
SHMT2-223	ENST00000556689	C12orf66	Q96MD2	445 aa		12.33	□□□□□ -0.44
SHMT2-223	ENST00000556689	TLR10	Q9BXR5	811 aa		12.33	□□□□□ -0.44

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