RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 PTPRQQ9UMZ3 2332 aa20.21■□□□□ 0.83
VPS28-206ENST00000526734 SLC35G4P0C7Q5 338 aa20.2■□□□□ 0.82
VPS28-206ENST00000526734 ACRV1P26436 265 aa20.2■□□□□ 0.82
VPS28-206ENST00000526734 CAPZBP47756 277 aa20.2■□□□□ 0.82
VPS28-206ENST00000526734 GPR18Q14330 331 aa20.2■□□□□ 0.82
VPS28-206ENST00000526734 ITIH4Q14624 930 aa20.2■□□□□ 0.82
VPS28-206ENST00000526734 CLCA4Q14CN2 919 aa20.2■□□□□ 0.82
VPS28-206ENST00000526734 RPE65Q16518 533 aa20.2■□□□□ 0.82
VPS28-206ENST00000526734 FAM83HQ6ZRV2 1179 aaPredicted RBP20.2■□□□□ 0.82
VPS28-206ENST00000526734 TAB3Q8N5C8 712 aaPredicted RBP20.2■□□□□ 0.82
VPS28-206ENST00000526734 OR52K1Q8NGK4 314 aa20.2■□□□□ 0.82
VPS28-206ENST00000526734 TBRG4Q969Z0 631 aaKnown RBP eCLIP20.2■□□□□ 0.82
VPS28-206ENST00000526734 SLC39A1Q9NY26 324 aa20.2■□□□□ 0.82
VPS28-206ENST00000526734 FOXJ2Q9P0K8 574 aa20.2■□□□□ 0.82
VPS28-206ENST00000526734 EPHA6Q9UF33 1036 aa20.2■□□□□ 0.82
VPS28-206ENST00000526734 WDR37Q9Y2I8 494 aa20.2■□□□□ 0.82
VPS28-206ENST00000526734 ZFHX4Q86UP3 3567 aa20.19■□□□□ 0.82
VPS28-206ENST00000526734 GOLGA6L3A6NEY3 463 aa20.19■□□□□ 0.82
VPS28-206ENST00000526734 EFCAB7A8K855 629 aa20.19■□□□□ 0.82
VPS28-206ENST00000526734 STMND1H3BQB6 276 aa20.19■□□□□ 0.82
VPS28-206ENST00000526734 CEP104O60308 925 aa20.19■□□□□ 0.82
VPS28-206ENST00000526734 AP2A2O94973 939 aa20.19■□□□□ 0.82
VPS28-206ENST00000526734 MTHFD1P11586 935 aaKnown RBP20.19■□□□□ 0.82
VPS28-206ENST00000526734 MPSTP25325 297 aa20.19■□□□□ 0.82
VPS28-206ENST00000526734 PBLDP30039 288 aaPredicted RBP20.19■□□□□ 0.82
VPS28-206ENST00000526734 RHDQ02161 417 aa20.19■□□□□ 0.82
VPS28-206ENST00000526734 DCAF12Q5T6F0 453 aa20.19■□□□□ 0.82
VPS28-206ENST00000526734 ZNF449Q6P9G9 518 aa20.19■□□□□ 0.82
VPS28-206ENST00000526734 CCDC81Q6ZN84 652 aa20.19■□□□□ 0.82
VPS28-206ENST00000526734 SERPINA9Q86WD7 417 aa20.19■□□□□ 0.82
VPS28-206ENST00000526734 FAM129CQ86XR2 697 aa20.19■□□□□ 0.82
VPS28-206ENST00000526734 DTX1Q86Y01 620 aa20.19■□□□□ 0.82
VPS28-206ENST00000526734 ART4Q93070 314 aa20.19■□□□□ 0.82
VPS28-206ENST00000526734 ZDHHC12Q96GR4 267 aa20.19■□□□□ 0.82
VPS28-206ENST00000526734 C9orf72Q96LT7 481 aa20.19■□□□□ 0.82
VPS28-206ENST00000526734 TTC1Q99614 292 aa20.19■□□□□ 0.82
VPS28-206ENST00000526734 CASS4Q9NQ75 786 aa20.19■□□□□ 0.82
VPS28-206ENST00000526734 OGFRQ9NZT2 677 aa20.19■□□□□ 0.82
VPS28-206ENST00000526734 RALYQ9UKM9 306 aaKnown RBP20.19■□□□□ 0.82
VPS28-206ENST00000526734 JRKLQ9Y4A0 524 aa20.19■□□□□ 0.82
VPS28-206ENST00000526734 HEBP2Q9Y5Z4 205 aa20.19■□□□□ 0.82
VPS28-206ENST00000526734 F8W8V4 182 aa20.18■□□□□ 0.82
VPS28-206ENST00000526734 K7ENP7 123 aa20.18■□□□□ 0.82
VPS28-206ENST00000526734 SGTAO43765 313 aa20.18■□□□□ 0.82
VPS28-206ENST00000526734 APRTP07741 180 aa20.18■□□□□ 0.82
VPS28-206ENST00000526734 ADRA1DP25100 572 aa20.18■□□□□ 0.82
VPS28-206ENST00000526734 MSNP26038 577 aaKnown RBP20.18■□□□□ 0.82
VPS28-206ENST00000526734 NDUFS1P28331 727 aa20.18■□□□□ 0.82
VPS28-206ENST00000526734 MC2RQ01718 297 aa20.18■□□□□ 0.82
VPS28-206ENST00000526734 SNAP47Q5SQN1 464 aa20.18■□□□□ 0.82
VPS28-206ENST00000526734 LYPLAL1Q5VWZ2 237 aa20.18■□□□□ 0.82
VPS28-206ENST00000526734 CYB5D1Q6P9G0 228 aa20.18■□□□□ 0.82
VPS28-206ENST00000526734 INO80CQ6PI98 192 aaPredicted RBP20.18■□□□□ 0.82
VPS28-206ENST00000526734 CEACAM20Q6UY09 585 aa20.18■□□□□ 0.82
VPS28-206ENST00000526734 TAS2R42Q7RTR8 314 aa20.18■□□□□ 0.82
VPS28-206ENST00000526734 GSTA5Q7RTV2 222 aa20.18■□□□□ 0.82
VPS28-206ENST00000526734 PRSS42Q7Z5A4 293 aa20.18■□□□□ 0.82
VPS28-206ENST00000526734 BMPERQ8N8U9 685 aa20.18■□□□□ 0.82
VPS28-206ENST00000526734 FBXO8Q9NRD0 319 aa20.18■□□□□ 0.82
VPS28-206ENST00000526734 IMP3Q9NV31 184 aaKnown RBP20.18■□□□□ 0.82
VPS28-206ENST00000526734 PSMD13Q9UNM6 376 aa20.18■□□□□ 0.82
VPS28-206ENST00000526734 A8MU76 341 aa20.17■□□□□ 0.82
VPS28-206ENST00000526734 AGRPO00253 132 aa20.17■□□□□ 0.82
VPS28-206ENST00000526734 CCL22O00626 93 aa20.17■□□□□ 0.82
VPS28-206ENST00000526734 ZSCAN12O43309 604 aa20.17■□□□□ 0.82
VPS28-206ENST00000526734 TYRP1P17643 537 aa20.17■□□□□ 0.82
VPS28-206ENST00000526734 RPL22P35268 128 aaKnown RBP20.17■□□□□ 0.82
VPS28-206ENST00000526734 NSG1P42857 185 aa20.17■□□□□ 0.82
VPS28-206ENST00000526734 ATP1A2P50993 1020 aa20.17■□□□□ 0.82
VPS28-206ENST00000526734 CDK16Q00536 496 aa20.17■□□□□ 0.82
VPS28-206ENST00000526734 RPA4Q13156 261 aa20.17■□□□□ 0.82
VPS28-206ENST00000526734 TSTD2Q5T7W7 516 aa20.17■□□□□ 0.82
VPS28-206ENST00000526734 AFTPHQ6ULP2 937 aa20.17■□□□□ 0.82
VPS28-206ENST00000526734 PACS1Q6VY07 963 aa20.17■□□□□ 0.82
VPS28-206ENST00000526734 CERS6Q6ZMG9 384 aa20.17■□□□□ 0.82
VPS28-206ENST00000526734 PBKQ96KB5 322 aa20.17■□□□□ 0.82
VPS28-206ENST00000526734 C12orf66Q96MD2 445 aa20.17■□□□□ 0.82
VPS28-206ENST00000526734 NAP1L3Q99457 506 aaPredicted RBP20.17■□□□□ 0.82
VPS28-206ENST00000526734 WWP1Q9H0M0 922 aa20.17■□□□□ 0.82
VPS28-206ENST00000526734 FAM96AQ9H5X1 160 aa20.17■□□□□ 0.82
VPS28-206ENST00000526734 CPNE5Q9HCH3 593 aa20.17■□□□□ 0.82
VPS28-206ENST00000526734 PIH1D1Q9NWS0 290 aaKnown RBP20.17■□□□□ 0.82
VPS28-206ENST00000526734 OCIAD1Q9NX40 245 aa20.17■□□□□ 0.82
VPS28-206ENST00000526734 COLEC10Q9Y6Z7 277 aa20.17■□□□□ 0.82
VPS28-206ENST00000526734 TK2O00142 265 aa20.16■□□□□ 0.82
VPS28-206ENST00000526734 CAPN5O15484 640 aaPredicted RBP20.16■□□□□ 0.82
VPS28-206ENST00000526734 PPARGP37231 505 aaPredicted RBP20.16■□□□□ 0.82
VPS28-206ENST00000526734 GFERP55789 205 aa20.16■□□□□ 0.82
VPS28-206ENST00000526734 ACVR1Q04771 509 aa20.16■□□□□ 0.82
VPS28-206ENST00000526734 PLCL1Q15111 1095 aa20.16■□□□□ 0.82
VPS28-206ENST00000526734 DBN1Q16643 649 aa20.16■□□□□ 0.82
VPS28-206ENST00000526734 ZFAND4Q86XD8 727 aa20.16■□□□□ 0.82
VPS28-206ENST00000526734 PPHLN1Q8NEY8 458 aaKnown RBP20.16■□□□□ 0.82
VPS28-206ENST00000526734 GPR150Q8NGU9 434 aa20.16■□□□□ 0.82
VPS28-206ENST00000526734 RSC1A1Q92681 617 aa20.16■□□□□ 0.82
VPS28-206ENST00000526734 SGSM3Q96HU1 749 aa20.16■□□□□ 0.82
VPS28-206ENST00000526734 TGM7Q96PF1 710 aa20.16■□□□□ 0.82
VPS28-206ENST00000526734 CD180Q99467 661 aa20.16■□□□□ 0.82
VPS28-206ENST00000526734 ZNF768Q9H5H4 540 aaKnown RBP20.16■□□□□ 0.82
VPS28-206ENST00000526734 KIR3DX1Q9H7L2 352 aa20.16■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms