RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 ZNF148Q9UQR1 794 aa9.16□□□□□ -0.94
HDAC3-215ENST00000519474 DRG1Q9Y295 367 aaKnown RBP9.16□□□□□ -0.94
HDAC3-215ENST00000519474 CELSR3Q9NYQ7 3312 aa9.16□□□□□ -0.94
HDAC3-215ENST00000519474 FREM2Q5SZK8 3169 aa9.16□□□□□ -0.94
HDAC3-215ENST00000519474 CFAP47Q6ZTR5 3102 aa9.16□□□□□ -0.94
HDAC3-215ENST00000519474 PKD1L2Q7Z442 2459 aa9.15□□□□□ -0.94
HDAC3-215ENST00000519474 IGLV3-16A0A075B6K0 115 aa9.15□□□□□ -0.94
HDAC3-215ENST00000519474 MROH6A6NGR9 719 aa9.15□□□□□ -0.94
HDAC3-215ENST00000519474 ESPNB1AK53 854 aa9.15□□□□□ -0.94
HDAC3-215ENST00000519474 IQCJ-SCHIP1C9J366 451 aaPredicted RBP9.15□□□□□ -0.94
HDAC3-215ENST00000519474 ATXN7O15265 892 aaPredicted RBP9.15□□□□□ -0.94
HDAC3-215ENST00000519474 SUN1O94901 812 aa9.15□□□□□ -0.94
HDAC3-215ENST00000519474 POLBP06746 335 aa9.15□□□□□ -0.94
HDAC3-215ENST00000519474 ZSCAN5DPP0CG00 497 aa9.15□□□□□ -0.94
HDAC3-215ENST00000519474 LIPCP11150 499 aa9.15□□□□□ -0.94
HDAC3-215ENST00000519474 ATP1B2P14415 290 aaPredicted RBP9.15□□□□□ -0.94
HDAC3-215ENST00000519474 VCLP18206 1134 aa9.15□□□□□ -0.94
HDAC3-215ENST00000519474 WT1P19544 449 aaPredicted RBP9.15□□□□□ -0.94
HDAC3-215ENST00000519474 CD82P27701 267 aa9.15□□□□□ -0.94
HDAC3-215ENST00000519474 MC4RP32245 332 aa9.15□□□□□ -0.94
HDAC3-215ENST00000519474 RPL22P35268 128 aaKnown RBP9.15□□□□□ -0.94
HDAC3-215ENST00000519474 MAPK9P45984 424 aa9.15□□□□□ -0.94
HDAC3-215ENST00000519474 PPM1FP49593 454 aaPredicted RBP9.15□□□□□ -0.94
HDAC3-215ENST00000519474 GFERP55789 205 aa9.15□□□□□ -0.94
HDAC3-215ENST00000519474 GPR18Q14330 331 aa9.15□□□□□ -0.94
HDAC3-215ENST00000519474 LONRF2Q1L5Z9 754 aa9.15□□□□□ -0.94
HDAC3-215ENST00000519474 GPR33Q49SQ1 333 aa9.15□□□□□ -0.94
HDAC3-215ENST00000519474 ZNF658BQ4V348 819 aaPredicted RBP9.15□□□□□ -0.94
HDAC3-215ENST00000519474 BCL7AQ4VC05 210 aa9.15□□□□□ -0.94
HDAC3-215ENST00000519474 SWT1Q5T5J6 900 aaKnown RBP9.15□□□□□ -0.94
HDAC3-215ENST00000519474 SEL1L2Q5TEA6 688 aa9.15□□□□□ -0.94
HDAC3-215ENST00000519474 CAPRIN2Q6IMN6 1127 aaKnown RBP9.15□□□□□ -0.94
HDAC3-215ENST00000519474 SNX20Q7Z614 316 aa9.15□□□□□ -0.94
HDAC3-215ENST00000519474 PLXDC1Q8IUK5 500 aa9.15□□□□□ -0.94
HDAC3-215ENST00000519474 TRIM48Q8IWZ4 208 aa9.15□□□□□ -0.94
HDAC3-215ENST00000519474 RBM12BQ8IXT5 1001 aaKnown RBP9.15□□□□□ -0.94
HDAC3-215ENST00000519474 CFAP206Q8IYR0 622 aa9.15□□□□□ -0.94
HDAC3-215ENST00000519474 NXPE1Q8N323 547 aa9.15□□□□□ -0.94
HDAC3-215ENST00000519474 LILRA3Q8N6C8 439 aaPredicted RBP9.15□□□□□ -0.94
HDAC3-215ENST00000519474 CCDC112Q8NEF3 446 aa9.15□□□□□ -0.94
HDAC3-215ENST00000519474 SPDYE1Q8NFV5 336 aaPredicted RBP9.15□□□□□ -0.94
HDAC3-215ENST00000519474 SLC39A7Q92504 469 aa9.15□□□□□ -0.94
HDAC3-215ENST00000519474 TTC9Q92623 222 aa9.15□□□□□ -0.94
HDAC3-215ENST00000519474 NKD1Q969G9 470 aa9.15□□□□□ -0.94
HDAC3-215ENST00000519474 CXorf40BQ96DE9 158 aa9.15□□□□□ -0.94
HDAC3-215ENST00000519474 ZCCHC2Q9C0B9 1178 aaKnown RBP9.15□□□□□ -0.94
HDAC3-215ENST00000519474 RAB33BQ9H082 229 aa9.15□□□□□ -0.94
HDAC3-215ENST00000519474 EPB41L1Q9H4G0 881 aa9.15□□□□□ -0.94
HDAC3-215ENST00000519474 APMAPQ9HDC9 416 aa9.15□□□□□ -0.94
HDAC3-215ENST00000519474 ZDHHC3Q9NYG2 299 aa9.15□□□□□ -0.94
HDAC3-215ENST00000519474 SEMA5BQ9P283 1151 aa9.15□□□□□ -0.94
HDAC3-215ENST00000519474 KLHL3Q9UH77 587 aa9.15□□□□□ -0.94
HDAC3-215ENST00000519474 ACSL5Q9ULC5 683 aa9.15□□□□□ -0.94
HDAC3-215ENST00000519474 COMMD10Q9Y6G5 202 aa9.15□□□□□ -0.94
HDAC3-215ENST00000519474 ZFHX4Q86UP3 3567 aa9.14□□□□□ -0.95
HDAC3-215ENST00000519474 PTPRQQ9UMZ3 2332 aa9.14□□□□□ -0.95
HDAC3-215ENST00000519474 C17orf113A0A1B0GUU1 675 aa9.14□□□□□ -0.95
HDAC3-215ENST00000519474 TK2O00142 265 aa9.14□□□□□ -0.95
HDAC3-215ENST00000519474 CAPN5O15484 640 aaPredicted RBP9.14□□□□□ -0.95
HDAC3-215ENST00000519474 IFNB1P01574 187 aa9.14□□□□□ -0.95
HDAC3-215ENST00000519474 PRB1P04280 392 aa9.14□□□□□ -0.95
HDAC3-215ENST00000519474 CCDC175P0C221 793 aa9.14□□□□□ -0.95
HDAC3-215ENST00000519474 PBLDP30039 288 aaPredicted RBP9.14□□□□□ -0.95
HDAC3-215ENST00000519474 AKT1P31749 480 aa9.14□□□□□ -0.95
HDAC3-215ENST00000519474 FDFT1P37268 417 aa9.14□□□□□ -0.95
HDAC3-215ENST00000519474 HALP42357 657 aa9.14□□□□□ -0.95
HDAC3-215ENST00000519474 KCNJ1P48048 391 aa9.14□□□□□ -0.95
HDAC3-215ENST00000519474 LEPRP48357 1165 aaKnown RBP9.14□□□□□ -0.95
HDAC3-215ENST00000519474 RHDQ02161 417 aa9.14□□□□□ -0.95
HDAC3-215ENST00000519474 POU6F1Q14863 301 aa9.14□□□□□ -0.95
HDAC3-215ENST00000519474 CCDC38Q502W7 563 aa9.14□□□□□ -0.95
HDAC3-215ENST00000519474 ZRANB3Q5FWF4 1079 aa9.14□□□□□ -0.95
HDAC3-215ENST00000519474 DCAF12Q5T6F0 453 aa9.14□□□□□ -0.95
HDAC3-215ENST00000519474 ANKS6Q68DC2 871 aa9.14□□□□□ -0.95
HDAC3-215ENST00000519474 DRICH1Q6PGQ1 229 aaPredicted RBP9.14□□□□□ -0.95
HDAC3-215ENST00000519474 TAS2R42Q7RTR8 314 aa9.14□□□□□ -0.95
HDAC3-215ENST00000519474 TIPARPQ7Z3E1 657 aaKnown RBP9.14□□□□□ -0.95
HDAC3-215ENST00000519474 LINC00523Q86TU6 105 aa9.14□□□□□ -0.95
HDAC3-215ENST00000519474 SERPINA9Q86WD7 417 aa9.14□□□□□ -0.95
HDAC3-215ENST00000519474 FAM129CQ86XR2 697 aa9.14□□□□□ -0.95
HDAC3-215ENST00000519474 PIANPQ8IYJ0 282 aa9.14□□□□□ -0.95
HDAC3-215ENST00000519474 GPR150Q8NGU9 434 aa9.14□□□□□ -0.95
HDAC3-215ENST00000519474 HEXDCQ8WVB3 486 aa9.14□□□□□ -0.95
HDAC3-215ENST00000519474 ZFPM2Q8WW38 1151 aa9.14□□□□□ -0.95
HDAC3-215ENST00000519474 JPH3Q8WXH2 748 aaPredicted RBP9.14□□□□□ -0.95
HDAC3-215ENST00000519474 KLHL6Q8WZ60 621 aa9.14□□□□□ -0.95
HDAC3-215ENST00000519474 RSC1A1Q92681 617 aa9.14□□□□□ -0.95
HDAC3-215ENST00000519474 ULK4Q96C45 1275 aa9.14□□□□□ -0.95
HDAC3-215ENST00000519474 LRRC45Q96CN5 670 aa9.14□□□□□ -0.95
HDAC3-215ENST00000519474 WBP1Q96G27 269 aa9.14□□□□□ -0.95
HDAC3-215ENST00000519474 DCUN1D1Q96GG9 259 aa9.14□□□□□ -0.95
HDAC3-215ENST00000519474 ZNF778Q96MU6 729 aa9.14□□□□□ -0.95
HDAC3-215ENST00000519474 COPS8Q99627 209 aa9.14□□□□□ -0.95
HDAC3-215ENST00000519474 CTRCQ99895 268 aa9.14□□□□□ -0.95
HDAC3-215ENST00000519474 DDA1Q9BW61 102 aa9.14□□□□□ -0.95
HDAC3-215ENST00000519474 ASPSCR1Q9BZE9 553 aa9.14□□□□□ -0.95
HDAC3-215ENST00000519474 WWP1Q9H0M0 922 aa9.14□□□□□ -0.95
HDAC3-215ENST00000519474 CASS4Q9NQ75 786 aa9.14□□□□□ -0.95
HDAC3-215ENST00000519474 CRLS1Q9UJA2 301 aa9.14□□□□□ -0.95
HDAC3-215ENST00000519474 PILRAQ9UKJ1 303 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms