RNA–Protein interactions for RNA: ENST00000495528.1

VIM-207, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 962 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-207ENST00000495528 TNRC6BQ9UPQ9 1833 aaKnown RBP6.6□□□□□ -1.35
VIM-207ENST00000495528 ATP8B3O60423 1300 aa6.6□□□□□ -1.35
VIM-207ENST00000495528 KCNJ18B7U540 433 aa6.6□□□□□ -1.35
VIM-207ENST00000495528 HHLA1C9JL84 531 aa6.6□□□□□ -1.35
VIM-207ENST00000495528 PES1O00541 588 aaKnown RBP6.6□□□□□ -1.35
VIM-207ENST00000495528 CD3EAPO15446 510 aaKnown RBP6.6□□□□□ -1.35
VIM-207ENST00000495528 SERPINC1P01008 464 aa6.6□□□□□ -1.35
VIM-207ENST00000495528 EPB41P11171 864 aaKnown RBP6.6□□□□□ -1.35
VIM-207ENST00000495528 RARGP13631 454 aa6.6□□□□□ -1.35
VIM-207ENST00000495528 ATP1A3P13637 1013 aa6.6□□□□□ -1.35
VIM-207ENST00000495528 JUPP14923 745 aa6.6□□□□□ -1.35
VIM-207ENST00000495528 NDUFB7P17568 137 aa6.6□□□□□ -1.35
VIM-207ENST00000495528 NDST1P52848 882 aa6.6□□□□□ -1.35
VIM-207ENST00000495528 BIRC3Q13489 604 aa6.6□□□□□ -1.35
VIM-207ENST00000495528 KCNJ12Q14500 433 aa6.6□□□□□ -1.35
VIM-207ENST00000495528 NFIL3Q16649 462 aa6.6□□□□□ -1.35
VIM-207ENST00000495528 ZNF699Q32M78 642 aa6.6□□□□□ -1.35
VIM-207ENST00000495528 ARL13BQ3SXY8 428 aa6.6□□□□□ -1.35
VIM-207ENST00000495528 FUT11Q495W5 492 aa6.6□□□□□ -1.35
VIM-207ENST00000495528 TCP11X2Q5H9J9 407 aa6.6□□□□□ -1.35
VIM-207ENST00000495528 ZNF667Q5HYK9 610 aa6.6□□□□□ -1.35
VIM-207ENST00000495528 DPY19L3Q6ZPD9 716 aa6.6□□□□□ -1.35
VIM-207ENST00000495528 ZNF551Q7Z340 670 aaPredicted RBP6.6□□□□□ -1.35
VIM-207ENST00000495528 GLRX5Q86SX6 157 aa6.6□□□□□ -1.35
VIM-207ENST00000495528 C12orf56Q8IXR9 622 aa6.6□□□□□ -1.35
VIM-207ENST00000495528 FAM186BQ8IYM0 893 aa6.6□□□□□ -1.35
VIM-207ENST00000495528 CRYBG2Q8N1P7 616 aa6.6□□□□□ -1.35
VIM-207ENST00000495528 ZCCHC9Q8N567 271 aaKnown RBP6.6□□□□□ -1.35
VIM-207ENST00000495528 OR2C3Q8N628 320 aa6.6□□□□□ -1.35
VIM-207ENST00000495528 C12orf29Q8N999 325 aa6.6□□□□□ -1.35
VIM-207ENST00000495528 SIMC1Q8NDZ2 872 aa6.6□□□□□ -1.35
VIM-207ENST00000495528 SLC2A14Q8TDB8 520 aa6.6□□□□□ -1.35
VIM-207ENST00000495528 SETD7Q8WTS6 366 aaKnown RBP6.6□□□□□ -1.35
VIM-207ENST00000495528 NAP1L5Q96NT1 182 aaPredicted RBP6.6□□□□□ -1.35
VIM-207ENST00000495528 HAPLN3Q96S86 360 aa6.6□□□□□ -1.35
VIM-207ENST00000495528 ELAC2Q9BQ52 826 aaKnown RBP6.6□□□□□ -1.35
VIM-207ENST00000495528 DPCDQ9BVM2 203 aaPredicted RBP6.6□□□□□ -1.35
VIM-207ENST00000495528 HSD3B7Q9H2F3 369 aa6.6□□□□□ -1.35
VIM-207ENST00000495528 FBXO44Q9H4M3 255 aa6.6□□□□□ -1.35
VIM-207ENST00000495528 GAREM1Q9H706 876 aa6.6□□□□□ -1.35
VIM-207ENST00000495528 SYNPO2LQ9H987 977 aa6.6□□□□□ -1.35
VIM-207ENST00000495528 GRPEL1Q9HAV7 217 aa6.6□□□□□ -1.35
VIM-207ENST00000495528 PRDM16Q9HAZ2 1276 aa6.6□□□□□ -1.35
VIM-207ENST00000495528 HEYLQ9NQ87 328 aaPredicted RBP6.6□□□□□ -1.35
VIM-207ENST00000495528 FAM49BQ9NUQ9 324 aa6.6□□□□□ -1.35
VIM-207ENST00000495528 ASB6Q9NWX5 421 aa6.6□□□□□ -1.35
VIM-207ENST00000495528 DKK4Q9UBT3 224 aa6.6□□□□□ -1.35
VIM-207ENST00000495528 HMGXB4Q9UGU5 601 aa6.6□□□□□ -1.35
VIM-207ENST00000495528 ARMCX3Q9UH62 379 aaPredicted RBP6.6□□□□□ -1.35
VIM-207ENST00000495528 SCML2Q9UQR0 700 aa6.6□□□□□ -1.35
VIM-207ENST00000495528 HELZP42694 1942 aaKnown RBP6.6□□□□□ -1.35
VIM-207ENST00000495528 LAMA5O15230 3695 aa6.59□□□□□ -1.35
VIM-207ENST00000495528 PLXND1Q9Y4D7 1925 aa6.59□□□□□ -1.35
VIM-207ENST00000495528 A0A1B0GVT2 93 aa6.59□□□□□ -1.35
VIM-207ENST00000495528 A0A1W2PPC4 97 aa6.59□□□□□ -1.35
VIM-207ENST00000495528 AQP7P3A6NL99 342 aa6.59□□□□□ -1.35
VIM-207ENST00000495528 ZAR1LA6NP61 321 aa6.59□□□□□ -1.35
VIM-207ENST00000495528 LRRIQ3A6PVS8 624 aaPredicted RBP6.59□□□□□ -1.35
VIM-207ENST00000495528 MEI4A8MW99 385 aa6.59□□□□□ -1.35
VIM-207ENST00000495528 GNA14O95837 355 aa6.59□□□□□ -1.35
VIM-207ENST00000495528 KLKB1P03952 638 aa6.59□□□□□ -1.35
VIM-207ENST00000495528 KRT13P13646 458 aa6.59□□□□□ -1.35
VIM-207ENST00000495528 BMP5P22003 454 aa6.59□□□□□ -1.35
VIM-207ENST00000495528 PCSK6P29122 969 aa6.59□□□□□ -1.35
VIM-207ENST00000495528 ADORA2BP29275 332 aa6.59□□□□□ -1.35
VIM-207ENST00000495528 UQCRC1P31930 480 aa6.59□□□□□ -1.35
VIM-207ENST00000495528 TPMTP51580 245 aa6.59□□□□□ -1.35
VIM-207ENST00000495528 VAMP7P51809 220 aa6.59□□□□□ -1.35
VIM-207ENST00000495528 BCAT1P54687 386 aa6.59□□□□□ -1.35
VIM-207ENST00000495528 MFAP3P55082 362 aa6.59□□□□□ -1.35
VIM-207ENST00000495528 UBASH3AP57075 661 aa6.59□□□□□ -1.35
VIM-207ENST00000495528 GOLGA8FQ08AF8 430 aa6.59□□□□□ -1.35
VIM-207ENST00000495528 GOLGA8DPQ0D2H9 430 aa6.59□□□□□ -1.35
VIM-207ENST00000495528 ENPP2Q13822 863 aa6.59□□□□□ -1.35
VIM-207ENST00000495528 KRT31Q15323 416 aa6.59□□□□□ -1.35
VIM-207ENST00000495528 HLA-BQ31612 363 aa6.59□□□□□ -1.35
VIM-207ENST00000495528 CLEC20AQ6ZU45 233 aa6.59□□□□□ -1.35
VIM-207ENST00000495528 SCD5Q86SK9 330 aa6.59□□□□□ -1.35
VIM-207ENST00000495528 FAM114A1Q8IWE2 563 aa6.59□□□□□ -1.35
VIM-207ENST00000495528 ZC3H3Q8IXZ2 948 aaKnown RBP6.59□□□□□ -1.35
VIM-207ENST00000495528 ANKRD20A12PQ8NF67 263 aa6.59□□□□□ -1.35
VIM-207ENST00000495528 CADM4Q8NFZ8 388 aa6.59□□□□□ -1.35
VIM-207ENST00000495528 KIAA1191Q96A73 305 aa6.59□□□□□ -1.35
VIM-207ENST00000495528 JAKMIP2Q96AA8 810 aa6.59□□□□□ -1.35
VIM-207ENST00000495528 SIPA1Q96FS4 1042 aa6.59□□□□□ -1.35
VIM-207ENST00000495528 TUBGCP2Q9BSJ2 902 aa6.59□□□□□ -1.35
VIM-207ENST00000495528 TRIM5Q9C035 493 aa6.59□□□□□ -1.35
VIM-207ENST00000495528 CPNE5Q9HCH3 593 aa6.59□□□□□ -1.35
VIM-207ENST00000495528 TM7SF3Q9NS93 570 aa6.59□□□□□ -1.35
VIM-207ENST00000495528 MTPAPQ9NVV4 582 aaKnown RBP eCLIP6.59□□□□□ -1.35
VIM-207ENST00000495528 TAB2Q9NYJ8 693 aa6.59□□□□□ -1.35
VIM-207ENST00000495528 IFNKQ9P0W0 207 aa6.59□□□□□ -1.35
VIM-207ENST00000495528 THAP10Q9P2Z0 257 aaPredicted RBP6.59□□□□□ -1.35
VIM-207ENST00000495528 MYO1AQ9UBC5 1043 aa6.59□□□□□ -1.35
VIM-207ENST00000495528 LIMA1Q9UHB6 759 aaKnown RBP6.59□□□□□ -1.35
VIM-207ENST00000495528 LSM7Q9UK45 103 aaKnown RBP6.59□□□□□ -1.35
VIM-207ENST00000495528 CLEC4EQ9ULY5 219 aa6.59□□□□□ -1.35
VIM-207ENST00000495528 USP22Q9UPT9 525 aa6.59□□□□□ -1.35
VIM-207ENST00000495528 SLC27A6Q9Y2P4 619 aa6.59□□□□□ -1.35
VIM-207ENST00000495528 SLCO1B1Q9Y6L6 691 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms