RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 TMEM74BQ9NUR3 256 aa17.77■□□□□ 0.43
SDC1-203ENST00000403076 DNAJC28Q9NX36 388 aa17.77■□□□□ 0.43
SDC1-203ENST00000403076 PILRBQ9UKJ0 227 aa17.77■□□□□ 0.43
SDC1-203ENST00000403076 DNAJC16Q9Y2G8 782 aa17.77■□□□□ 0.43
SDC1-203ENST00000403076 PCYT1BQ9Y5K3 369 aaPredicted RBP17.77■□□□□ 0.43
SDC1-203ENST00000403076 SPAG17Q6Q759 2223 aa17.76■□□□□ 0.43
SDC1-203ENST00000403076 A0A087X1B8 175 aa17.76■□□□□ 0.43
SDC1-203ENST00000403076 MGAT4DA6NG13 374 aa17.76■□□□□ 0.43
SDC1-203ENST00000403076 GSTM1P09488 218 aa17.76■□□□□ 0.43
SDC1-203ENST00000403076 ACP5P13686 325 aa17.76■□□□□ 0.43
SDC1-203ENST00000403076 KRT4P19013 534 aa17.76■□□□□ 0.43
SDC1-203ENST00000403076 AOAHP28039 575 aa17.76■□□□□ 0.43
SDC1-203ENST00000403076 BLKP51451 505 aa17.76■□□□□ 0.43
SDC1-203ENST00000403076 MAGOHP61326 146 aaKnown RBP17.76■□□□□ 0.43
SDC1-203ENST00000403076 ARHGAP8P85298 464 aa17.76■□□□□ 0.43
SDC1-203ENST00000403076 GSTM4Q03013 218 aa17.76■□□□□ 0.43
SDC1-203ENST00000403076 EIF2B5Q13144 721 aaKnown RBP17.76■□□□□ 0.43
SDC1-203ENST00000403076 CFAP206Q8IYR0 622 aa17.76■□□□□ 0.43
SDC1-203ENST00000403076 HM13Q8TCT9 377 aa17.76■□□□□ 0.43
SDC1-203ENST00000403076 ASZ1Q8WWH4 475 aa17.76■□□□□ 0.43
SDC1-203ENST00000403076 TMEM159Q96B96 161 aa17.76■□□□□ 0.43
SDC1-203ENST00000403076 LINC00615Q96LM1 132 aaPredicted RBP17.76■□□□□ 0.43
SDC1-203ENST00000403076 SLC30A3Q99726 388 aa17.76■□□□□ 0.43
SDC1-203ENST00000403076 PRRX2Q99811 253 aa17.76■□□□□ 0.43
SDC1-203ENST00000403076 SLC13A1Q9BZW2 595 aa17.76■□□□□ 0.43
SDC1-203ENST00000403076 LATS2Q9NRM7 1088 aa17.76■□□□□ 0.43
SDC1-203ENST00000403076 TM7SF3Q9NS93 570 aa17.76■□□□□ 0.43
SDC1-203ENST00000403076 KLC4Q9NSK0 619 aa17.76■□□□□ 0.43
SDC1-203ENST00000403076 TSR3Q9UJK0 312 aaKnown RBP17.76■□□□□ 0.43
SDC1-203ENST00000403076 C17orf113A0A1B0GUU1 675 aa17.75■□□□□ 0.43
SDC1-203ENST00000403076 A0A1B0GVT2 93 aa17.75■□□□□ 0.43
SDC1-203ENST00000403076 SYF2O95926 243 aaKnown RBP17.75■□□□□ 0.43
SDC1-203ENST00000403076 SLC35E2BP0CK96 405 aa17.75■□□□□ 0.43
SDC1-203ENST00000403076 CTSEP14091 401 aa17.75■□□□□ 0.43
SDC1-203ENST00000403076 DGKAP23743 735 aa17.75■□□□□ 0.43
SDC1-203ENST00000403076 MAGEA12P43365 314 aa17.75■□□□□ 0.43
SDC1-203ENST00000403076 RGS4P49798 205 aa17.75■□□□□ 0.43
SDC1-203ENST00000403076 HK3P52790 923 aa17.75■□□□□ 0.43
SDC1-203ENST00000403076 NXPH1P58417 271 aa17.75■□□□□ 0.43
SDC1-203ENST00000403076 IL2P60568 153 aa17.75■□□□□ 0.43
SDC1-203ENST00000403076 TTMPQ5BVD1 217 aa17.75■□□□□ 0.43
SDC1-203ENST00000403076 TNFAIP8L3Q5GJ75 292 aa17.75■□□□□ 0.43
SDC1-203ENST00000403076 PLEKHS1Q5SXH7 462 aa17.75■□□□□ 0.43
SDC1-203ENST00000403076 CCDC91Q7Z6B0 441 aa17.75■□□□□ 0.43
SDC1-203ENST00000403076 C11orf96Q7Z7L8 435 aa17.75■□□□□ 0.43
SDC1-203ENST00000403076 EXOC3L1Q86VI1 746 aa17.75■□□□□ 0.43
SDC1-203ENST00000403076 SPATS2Q86XZ4 545 aaKnown RBP17.75■□□□□ 0.43
SDC1-203ENST00000403076 SPNS2Q8IVW8 549 aa17.75■□□□□ 0.43
SDC1-203ENST00000403076 CPNE9Q8IYJ1 553 aa17.75■□□□□ 0.43
SDC1-203ENST00000403076 NKAPQ8N5F7 415 aaKnown RBP17.75■□□□□ 0.43
SDC1-203ENST00000403076 OR2L2Q8NH16 312 aa17.75■□□□□ 0.43
SDC1-203ENST00000403076 GIMAP7Q8NHV1 300 aa17.75■□□□□ 0.43
SDC1-203ENST00000403076 OSGEPL1Q9H4B0 414 aa17.75■□□□□ 0.43
SDC1-203ENST00000403076 KLHL42Q9P2K6 505 aa17.75■□□□□ 0.43
SDC1-203ENST00000403076 SLC23A2Q9UGH3 650 aa17.75■□□□□ 0.43
SDC1-203ENST00000403076 ANKRD6Q9Y2G4 727 aa17.75■□□□□ 0.43
SDC1-203ENST00000403076 KLHL33A6NCF5 533 aa17.74■□□□□ 0.43
SDC1-203ENST00000403076 HMGB1P1B2RPK0 211 aaPredicted RBP17.74■□□□□ 0.43
SDC1-203ENST00000403076 COPEO14579 308 aa17.74■□□□□ 0.43
SDC1-203ENST00000403076 LIN7AO14910 233 aaPredicted RBP17.74■□□□□ 0.43
SDC1-203ENST00000403076 CFIP05156 583 aa17.74■□□□□ 0.43
SDC1-203ENST00000403076 CCDC166P0CW27 439 aa17.74■□□□□ 0.43
SDC1-203ENST00000403076 GMPRP36959 345 aa17.74■□□□□ 0.43
SDC1-203ENST00000403076 TCEA2Q15560 299 aa17.74■□□□□ 0.43
SDC1-203ENST00000403076 RABEPKQ7Z6M1 372 aa17.74■□□□□ 0.43
SDC1-203ENST00000403076 PHACTR4Q8IZ21 702 aa17.74■□□□□ 0.43
SDC1-203ENST00000403076 SKA2Q8WVK7 121 aaPredicted RBP17.74■□□□□ 0.43
SDC1-203ENST00000403076 TLCD1Q96CP7 247 aa17.74■□□□□ 0.43
SDC1-203ENST00000403076 TIMM29Q9BSF4 260 aa17.74■□□□□ 0.43
SDC1-203ENST00000403076 COG4Q9H9E3 785 aa17.74■□□□□ 0.43
SDC1-203ENST00000403076 MED4Q9NPJ6 270 aa17.74■□□□□ 0.43
SDC1-203ENST00000403076 RUVBL2Q9Y230 463 aaKnown RBP17.74■□□□□ 0.43
SDC1-203ENST00000403076 PLEKHM1Q9Y4G2 1056 aa17.74■□□□□ 0.43
SDC1-203ENST00000403076 DGKBQ9Y6T7 804 aa17.74■□□□□ 0.43
SDC1-203ENST00000403076 ZNF318Q5VUA4 2279 aa17.74■□□□□ 0.43
SDC1-203ENST00000403076 KCNJ13O60928 360 aa17.73■□□□□ 0.43
SDC1-203ENST00000403076 SPAG7O75391 227 aa17.73■□□□□ 0.43
SDC1-203ENST00000403076 ZNF37AP17032 561 aaPredicted RBP17.73■□□□□ 0.43
SDC1-203ENST00000403076 JUNDP17535 347 aa17.73■□□□□ 0.43
SDC1-203ENST00000403076 HOXD12P35452 270 aa17.73■□□□□ 0.43
SDC1-203ENST00000403076 PREPP48147 710 aa17.73■□□□□ 0.43
SDC1-203ENST00000403076 CCT5P48643 541 aa17.73■□□□□ 0.43
SDC1-203ENST00000403076 IRF9Q00978 393 aa17.73■□□□□ 0.43
SDC1-203ENST00000403076 PLOD1Q02809 727 aaPredicted RBP17.73■□□□□ 0.43
SDC1-203ENST00000403076 CSHL1Q14406 222 aa17.73■□□□□ 0.43
SDC1-203ENST00000403076 NFE2L1Q14494 772 aa17.73■□□□□ 0.43
SDC1-203ENST00000403076 DUOXA1Q1HG43 343 aa17.73■□□□□ 0.43
SDC1-203ENST00000403076 ACSBG2Q5FVE4 666 aa17.73■□□□□ 0.43
SDC1-203ENST00000403076 TMEM207Q6UWW9 146 aa17.73■□□□□ 0.43
SDC1-203ENST00000403076 SPATA6LQ8N4H0 392 aa17.73■□□□□ 0.43
SDC1-203ENST00000403076 OXR1Q8N573 874 aa17.73■□□□□ 0.43
SDC1-203ENST00000403076 LILRA3Q8N6C8 439 aaPredicted RBP17.73■□□□□ 0.43
SDC1-203ENST00000403076 EEF1AKMT1Q8WVE0 214 aa17.73■□□□□ 0.43
SDC1-203ENST00000403076 KCTD4Q8WVF5 259 aa17.73■□□□□ 0.43
SDC1-203ENST00000403076 LINGO1Q96FE5 620 aa17.73■□□□□ 0.43
SDC1-203ENST00000403076 IQCGQ9H095 443 aaKnown RBP17.73■□□□□ 0.43
SDC1-203ENST00000403076 TMEM168Q9H0V1 697 aa17.73■□□□□ 0.43
SDC1-203ENST00000403076 KCNK9Q9NPC2 374 aa17.73■□□□□ 0.43
SDC1-203ENST00000403076 TRNAU1APQ9NX07 287 aaKnown RBP17.73■□□□□ 0.43
SDC1-203ENST00000403076 PNMA8BQ9ULN7 279 aaPredicted RBP17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms