RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 RTFDC1Q9BY42 306 aaPredicted RBP11.72□□□□□ -0.53
SYNPO-202ENST00000394243 SPATA31A3Q5VYP0 1347 aa11.71□□□□□ -0.53
SYNPO-202ENST00000394243 DCLK1O15075 740 aa11.71□□□□□ -0.53
SYNPO-202ENST00000394243 CSF2P04141 144 aa11.71□□□□□ -0.53
SYNPO-202ENST00000394243 FNTBP49356 437 aa11.71□□□□□ -0.53
SYNPO-202ENST00000394243 TCEA2Q15560 299 aa11.71□□□□□ -0.53
SYNPO-202ENST00000394243 ARSHQ5FYA8 562 aa11.71□□□□□ -0.53
SYNPO-202ENST00000394243 SMARCD3Q6STE5 483 aa11.71□□□□□ -0.53
SYNPO-202ENST00000394243 RC3H2Q9HBD1 1191 aaKnown RBP11.71□□□□□ -0.53
SYNPO-202ENST00000394243 PSMD9O00233 223 aa11.71□□□□□ -0.53
SYNPO-202ENST00000394243 ALDH2P05091 517 aa11.71□□□□□ -0.53
SYNPO-202ENST00000394243 ACADMP11310 421 aa11.71□□□□□ -0.53
SYNPO-202ENST00000394243 GTF2A2P52657 109 aa11.71□□□□□ -0.53
SYNPO-202ENST00000394243 C2orf80Q0P641 193 aa11.71□□□□□ -0.53
SYNPO-202ENST00000394243 ZNF404Q494X3 552 aa11.71□□□□□ -0.53
SYNPO-202ENST00000394243 C9orf64Q5T6V5 341 aa11.71□□□□□ -0.53
SYNPO-202ENST00000394243 LDB1Q86U70 411 aaPredicted RBP11.71□□□□□ -0.53
SYNPO-202ENST00000394243 LRRC57Q8N9N7 239 aa11.71□□□□□ -0.53
SYNPO-202ENST00000394243 CCDC107Q8WV48 283 aa11.71□□□□□ -0.53
SYNPO-202ENST00000394243 HAS1Q92839 578 aa11.71□□□□□ -0.53
SYNPO-202ENST00000394243 PARK7Q99497 189 aaKnown RBP11.71□□□□□ -0.53
SYNPO-202ENST00000394243 OR51V1Q9H2C8 321 aa11.71□□□□□ -0.53
SYNPO-202ENST00000394243 C3orf14Q9HBI5 128 aa11.71□□□□□ -0.53
SYNPO-202ENST00000394243 ITM2CQ9NQX7 267 aa11.71□□□□□ -0.53
SYNPO-202ENST00000394243 NUDT15Q9NV35 164 aa11.71□□□□□ -0.53
SYNPO-202ENST00000394243 MEMO1Q9Y316 297 aa11.71□□□□□ -0.53
SYNPO-202ENST00000394243 H3BRB1 525 aa11.71□□□□□ -0.53
SYNPO-202ENST00000394243 GRIK4Q16099 956 aa11.71□□□□□ -0.53
SYNPO-202ENST00000394243 VMACQ2NL98 169 aa11.71□□□□□ -0.53
SYNPO-202ENST00000394243 LRRC69Q6ZNQ3 347 aa11.71□□□□□ -0.53
SYNPO-202ENST00000394243 TMEM17Q86X19 198 aa11.71□□□□□ -0.53
SYNPO-202ENST00000394243 MKL1Q969V6 931 aa11.71□□□□□ -0.53
SYNPO-202ENST00000394243 HSFY1Q96LI6 401 aa11.71□□□□□ -0.53
SYNPO-202ENST00000394243 SLC39A8Q9C0K1 460 aa11.71□□□□□ -0.53
SYNPO-202ENST00000394243 DEFB129Q9H1M3 183 aa11.71□□□□□ -0.53
SYNPO-202ENST00000394243 TUT1Q9H6E5 874 aaKnown RBP11.71□□□□□ -0.53
SYNPO-202ENST00000394243 TCF7L1Q9HCS4 588 aa11.71□□□□□ -0.53
SYNPO-202ENST00000394243 MARK1Q9P0L2 795 aa11.71□□□□□ -0.53
SYNPO-202ENST00000394243 ITM2AO43736 263 aa11.71□□□□□ -0.54
SYNPO-202ENST00000394243 ERN1O75460 977 aaKnown RBP11.71□□□□□ -0.54
SYNPO-202ENST00000394243 MSL3P1P0C860 447 aa11.71□□□□□ -0.54
SYNPO-202ENST00000394243 ZNF14P17017 642 aaPredicted RBP11.71□□□□□ -0.54
SYNPO-202ENST00000394243 PIGZQ86VD9 579 aa11.71□□□□□ -0.54
SYNPO-202ENST00000394243 RBFAQ8N0V3 343 aa11.71□□□□□ -0.54
SYNPO-202ENST00000394243 AZIN2Q96A70 460 aa11.71□□□□□ -0.54
SYNPO-202ENST00000394243 TMEM246Q9BRR3 403 aa11.71□□□□□ -0.54
SYNPO-202ENST00000394243 MYOZ2Q9NPC6 264 aa11.71□□□□□ -0.54
SYNPO-202ENST00000394243 ZNF460Q14592 562 aa11.71□□□□□ -0.54
SYNPO-202ENST00000394243 TSTQ16762 297 aaKnown RBP11.71□□□□□ -0.54
SYNPO-202ENST00000394243 FAM171A1Q5VUB5 890 aa11.71□□□□□ -0.54
SYNPO-202ENST00000394243 WSCD1Q658N2 575 aa11.71□□□□□ -0.54
SYNPO-202ENST00000394243 SLC30A6Q6NXT4 461 aa11.71□□□□□ -0.54
SYNPO-202ENST00000394243 SLC9A9Q8IVB4 645 aa11.71□□□□□ -0.54
SYNPO-202ENST00000394243 SRFBP1Q8NEF9 429 aaKnown RBP11.71□□□□□ -0.54
SYNPO-202ENST00000394243 OR10H5Q8NGA6 315 aa11.71□□□□□ -0.54
SYNPO-202ENST00000394243 SLC38A4Q969I6 547 aa11.71□□□□□ -0.54
SYNPO-202ENST00000394243 SENP8Q96LD8 212 aa11.71□□□□□ -0.54
SYNPO-202ENST00000394243 MTMR10Q9NXD2 777 aa11.71□□□□□ -0.54
SYNPO-202ENST00000394243 SLC39A1Q9NY26 324 aa11.71□□□□□ -0.54
SYNPO-202ENST00000394243 UBQLN2Q9UHD9 624 aa11.71□□□□□ -0.54
SYNPO-202ENST00000394243 PADI2Q9Y2J8 665 aa11.71□□□□□ -0.54
SYNPO-202ENST00000394243 NR2E1Q9Y466 385 aa11.71□□□□□ -0.54
SYNPO-202ENST00000394243 OR1I1O60431 355 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 PAPSS2O95340 614 aaPredicted RBP11.7□□□□□ -0.54
SYNPO-202ENST00000394243 URODP06132 367 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 PTX3P26022 381 aaPredicted RBP11.7□□□□□ -0.54
SYNPO-202ENST00000394243 ARCN1P48444 511 aaKnown RBP11.7□□□□□ -0.54
SYNPO-202ENST00000394243 RHEBQ15382 184 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 TPGS1Q6ZTW0 290 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 OXR1Q8N573 874 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 OR2B2Q9GZK3 357 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 TRPS1Q9UHF7 1281 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 M0R233 179 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 PLATP00750 562 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 OGNP20774 298 aaKnown RBP11.7□□□□□ -0.54
SYNPO-202ENST00000394243 CD72P21854 359 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 CDKN2BP42772 138 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 CDK18Q07002 472 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 PLA2G4EQ3MJ16 856 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 ANKDD1AQ495B1 522 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 RFTN2Q52LD8 501 aaPredicted RBP11.7□□□□□ -0.54
SYNPO-202ENST00000394243 OTOP3Q7RTS5 596 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 UNC93AQ86WB7 457 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 TBX5Q99593 518 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 IPPKQ9H8X2 491 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 FBXO10Q9UK96 956 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 LOC100130705A0A1B0GUX0 176 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 AQP12BA6NM10 295 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 KMOO15229 486 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 SLC22A2O15244 555 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 PRKACAP17612 351 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 ASMTP46597 345 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 GRK1Q15835 563 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 POM121L1PQ3SYA9 428 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 FBXL19Q6PCT2 694 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 AQP12AQ8IXF9 295 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 PIGXQ8TBF5 258 aa11.7□□□□□ -0.54
SYNPO-202ENST00000394243 CLP1Q92989 425 aaKnown RBP11.7□□□□□ -0.54
SYNPO-202ENST00000394243 RPL36Q9Y3U8 105 aaKnown RBP11.7□□□□□ -0.54
SYNPO-202ENST00000394243 ISM1B1AKI9 464 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms