RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 MPP3Q13368 585 aa6.95□□□□□ -1.3
VPS13A-201ENST00000355766 LAMB3Q13751 1172 aa6.95□□□□□ -1.3
VPS13A-201ENST00000355766 ZNF234Q14588 700 aa6.95□□□□□ -1.3
VPS13A-201ENST00000355766 SHBQ15464 509 aa6.95□□□□□ -1.3
VPS13A-201ENST00000355766 PLEKHN1Q494U1 663 aaPredicted RBP6.95□□□□□ -1.3
VPS13A-201ENST00000355766 FAM133BQ5BKY9 247 aaKnown RBP6.95□□□□□ -1.3
VPS13A-201ENST00000355766 HTR3DQ70Z44 454 aa6.95□□□□□ -1.3
VPS13A-201ENST00000355766 CCDC25Q86WR0 208 aa6.95□□□□□ -1.3
VPS13A-201ENST00000355766 CHSY1Q86X52 802 aa6.95□□□□□ -1.3
VPS13A-201ENST00000355766 ZBED8Q8IZ13 594 aa6.95□□□□□ -1.3
VPS13A-201ENST00000355766 ZNF567Q8N184 647 aa6.95□□□□□ -1.3
VPS13A-201ENST00000355766 BBS5Q8N3I7 341 aa6.95□□□□□ -1.3
VPS13A-201ENST00000355766 SYT8Q8NBV8 401 aa6.95□□□□□ -1.3
VPS13A-201ENST00000355766 HJURPQ8NCD3 748 aaPredicted RBP6.95□□□□□ -1.3
VPS13A-201ENST00000355766 CCDC110Q8TBZ0 833 aa6.95□□□□□ -1.3
VPS13A-201ENST00000355766 SAP25Q8TEE9 199 aa6.95□□□□□ -1.3
VPS13A-201ENST00000355766 KCNE4Q8WWG9 221 aa6.95□□□□□ -1.3
VPS13A-201ENST00000355766 BIRC7Q96CA5 298 aa6.95□□□□□ -1.3
VPS13A-201ENST00000355766 RPRD1AQ96P16 312 aaPredicted RBP6.95□□□□□ -1.3
VPS13A-201ENST00000355766 ORAI3Q9BRQ5 295 aa6.95□□□□□ -1.3
VPS13A-201ENST00000355766 DHRS4Q9BTZ2 278 aa6.95□□□□□ -1.3
VPS13A-201ENST00000355766 ACE2Q9BYF1 805 aaPredicted RBP6.95□□□□□ -1.3
VPS13A-201ENST00000355766 IL22Q9GZX6 179 aa6.95□□□□□ -1.3
VPS13A-201ENST00000355766 MRM3Q9HC36 420 aaKnown RBP6.95□□□□□ -1.3
VPS13A-201ENST00000355766 ANKMY1Q9P2S6 941 aa6.95□□□□□ -1.3
VPS13A-201ENST00000355766 IPO11Q9UI26 975 aaKnown RBP6.95□□□□□ -1.3
VPS13A-201ENST00000355766 ZNF180Q9UJW8 692 aa6.95□□□□□ -1.3
VPS13A-201ENST00000355766 FBXO10Q9UK96 956 aa6.95□□□□□ -1.3
VPS13A-201ENST00000355766 TBC1D30Q9Y2I9 924 aa6.95□□□□□ -1.3
VPS13A-201ENST00000355766 SLC27A6Q9Y2P4 619 aa6.95□□□□□ -1.3
VPS13A-201ENST00000355766 MYO9AB2RTY4 2548 aa6.95□□□□□ -1.3
VPS13A-201ENST00000355766 COL12A1Q99715 3063 aa6.94□□□□□ -1.3
VPS13A-201ENST00000355766 EXOC1LA0A1B0GW35 172 aa6.94□□□□□ -1.3
VPS13A-201ENST00000355766 RASA4BC9J798 803 aa6.94□□□□□ -1.3
VPS13A-201ENST00000355766 RASA4O43374 803 aa6.94□□□□□ -1.3
VPS13A-201ENST00000355766 TSPAN3O60637 253 aa6.94□□□□□ -1.3
VPS13A-201ENST00000355766 PRAMEF11O60813 436 aa6.94□□□□□ -1.3
VPS13A-201ENST00000355766 SHOX2O60902 331 aaPredicted RBP6.94□□□□□ -1.3
VPS13A-201ENST00000355766 FSBPO95073 299 aa6.94□□□□□ -1.3
VPS13A-201ENST00000355766 METTL18O95568 372 aa6.94□□□□□ -1.3
VPS13A-201ENST00000355766 ACSL3O95573 720 aa6.94□□□□□ -1.3
VPS13A-201ENST00000355766 TBX18O95935 607 aa6.94□□□□□ -1.3
VPS13A-201ENST00000355766 MOCS2O96007 188 aaPredicted RBP6.94□□□□□ -1.3
VPS13A-201ENST00000355766 CPP00450 1065 aa6.94□□□□□ -1.3
VPS13A-201ENST00000355766 PENKP01210 267 aaPredicted RBP6.94□□□□□ -1.3
VPS13A-201ENST00000355766 EPHX1P07099 455 aa6.94□□□□□ -1.3
VPS13A-201ENST00000355766 IMPDH2P12268 514 aa6.94□□□□□ -1.3
VPS13A-201ENST00000355766 PGAM1P18669 254 aa6.94□□□□□ -1.3
VPS13A-201ENST00000355766 NR1D1P20393 614 aa6.94□□□□□ -1.3
VPS13A-201ENST00000355766 CORO1AP31146 461 aaKnown RBP6.94□□□□□ -1.3
VPS13A-201ENST00000355766 NPY2RP49146 381 aa6.94□□□□□ -1.3
VPS13A-201ENST00000355766 GEMP55040 296 aa6.94□□□□□ -1.3
VPS13A-201ENST00000355766 RACK1P63244 317 aaKnown RBP6.94□□□□□ -1.3
VPS13A-201ENST00000355766 CDH17Q12864 832 aa6.94□□□□□ -1.3
VPS13A-201ENST00000355766 NFATC3Q12968 1075 aa6.94□□□□□ -1.3
VPS13A-201ENST00000355766 SERINC3Q13530 473 aa6.94□□□□□ -1.3
VPS13A-201ENST00000355766 EIF4HQ15056 248 aaKnown RBP6.94□□□□□ -1.3
VPS13A-201ENST00000355766 E2F5Q15329 346 aa6.94□□□□□ -1.3
VPS13A-201ENST00000355766 KYNUQ16719 465 aa6.94□□□□□ -1.3
VPS13A-201ENST00000355766 GEN1Q17RS7 908 aa6.94□□□□□ -1.3
VPS13A-201ENST00000355766 ANKRD39Q53RE8 183 aa6.94□□□□□ -1.3
VPS13A-201ENST00000355766 TTMPQ5BVD1 217 aa6.94□□□□□ -1.3
VPS13A-201ENST00000355766 ANKRD22Q5VYY1 191 aa6.94□□□□□ -1.3
VPS13A-201ENST00000355766 KIAA1614Q5VZ46 1190 aa6.94□□□□□ -1.3
VPS13A-201ENST00000355766 HLA-DQA1Q5Y7H0 255 aa6.94□□□□□ -1.3
VPS13A-201ENST00000355766 NADSYN1Q6IA69 706 aa6.94□□□□□ -1.3
VPS13A-201ENST00000355766 ZNF534Q76KX8 674 aa6.94□□□□□ -1.3
VPS13A-201ENST00000355766 PID1Q7Z2X4 250 aa6.94□□□□□ -1.3
VPS13A-201ENST00000355766 CAND1Q86VP6 1230 aaKnown RBP6.94□□□□□ -1.3
VPS13A-201ENST00000355766 EID2Q8N6I1 236 aa6.94□□□□□ -1.3
VPS13A-201ENST00000355766 FBXO36Q8NEA4 188 aa6.94□□□□□ -1.3
VPS13A-201ENST00000355766 OR2T3Q8NH03 318 aa6.94□□□□□ -1.3
VPS13A-201ENST00000355766 GABPB2Q8TAK5 448 aaPredicted RBP6.94□□□□□ -1.3
VPS13A-201ENST00000355766 GSDMBQ8TAX9 411 aa6.94□□□□□ -1.3
VPS13A-201ENST00000355766 UCMAQ8WVF2 138 aa6.94□□□□□ -1.3
VPS13A-201ENST00000355766 TTC17Q96AE7 1141 aa6.94□□□□□ -1.3
VPS13A-201ENST00000355766 MTBPQ96DY7 904 aa6.94□□□□□ -1.3
VPS13A-201ENST00000355766 EBNA1BP2Q99848 306 aaKnown RBP6.94□□□□□ -1.3
VPS13A-201ENST00000355766 C19orf43Q9BQ61 176 aa6.94□□□□□ -1.3
VPS13A-201ENST00000355766 DPH1Q9BZG8 443 aa6.94□□□□□ -1.3
VPS13A-201ENST00000355766 BTBD1Q9H0C5 482 aa6.94□□□□□ -1.3
VPS13A-201ENST00000355766 SIK2Q9H0K1 926 aa6.94□□□□□ -1.3
VPS13A-201ENST00000355766 SLC25A51Q9H1U9 297 aa6.94□□□□□ -1.3
VPS13A-201ENST00000355766 NOL6Q9H6R4 1146 aaKnown RBP6.94□□□□□ -1.3
VPS13A-201ENST00000355766 ARNT2Q9HBZ2 717 aa6.94□□□□□ -1.3
VPS13A-201ENST00000355766 CASS4Q9NQ75 786 aa6.94□□□□□ -1.3
VPS13A-201ENST00000355766 NSMCE4AQ9NXX6 385 aa6.94□□□□□ -1.3
VPS13A-201ENST00000355766 PLK2Q9NYY3 685 aa6.94□□□□□ -1.3
VPS13A-201ENST00000355766 BFARQ9NZS9 450 aa6.94□□□□□ -1.3
VPS13A-201ENST00000355766 VPS18Q9P253 973 aa6.94□□□□□ -1.3
VPS13A-201ENST00000355766 PSMC3IPQ9P2W1 217 aaPredicted RBP6.94□□□□□ -1.3
VPS13A-201ENST00000355766 RSPH14Q9UHP6 348 aa6.94□□□□□ -1.3
VPS13A-201ENST00000355766 VANGL2Q9ULK5 521 aa6.94□□□□□ -1.3
VPS13A-201ENST00000355766 PCDHB1Q9Y5F3 818 aa6.94□□□□□ -1.3
VPS13A-201ENST00000355766 USP9XQ93008 2570 aaPredicted RBP6.93□□□□□ -1.3
VPS13A-201ENST00000355766 MYO18AQ92614 2054 aaKnown RBP6.93□□□□□ -1.3
VPS13A-201ENST00000355766 FAM237BA0A1B0GVD1 139 aa6.93□□□□□ -1.3
VPS13A-201ENST00000355766 TCRBV9S1A1TA0A576 114 aa6.93□□□□□ -1.3
VPS13A-201ENST00000355766 K7ENP7 123 aa6.93□□□□□ -1.3
VPS13A-201ENST00000355766 KCNK1O00180 336 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms