RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 STAT5BP51692 787 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 CACNB3P54284 484 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 HERVK_113P63132 956 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 EIF5AP63241 154 aaKnown RBP4.11□□□□□ -1.75
NEDD4-201ENST00000338963 USP10Q14694 798 aaKnown RBP4.11□□□□□ -1.75
NEDD4-201ENST00000338963 VEPH1Q14D04 833 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 ZMYND11Q15326 602 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 CFAP161Q6P656 301 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 TEX261Q6UWH6 196 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 RTL10Q7L3V2 364 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 SMIM15Q7Z3B0 74 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 PROSER1Q86XN7 944 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 ZZZ3Q8IYH5 903 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 ENTHD1Q8IYW4 607 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 RDH13Q8NBN7 331 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 OR5J2Q8NH18 312 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 C9orf43Q8TAL5 461 aaPredicted RBP4.11□□□□□ -1.75
NEDD4-201ENST00000338963 AP3S1Q92572 193 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 PIGKQ92643 395 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 GTF3AQ92664 365 aaKnown RBP4.11□□□□□ -1.75
NEDD4-201ENST00000338963 TCF25Q9BQ70 676 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 ZDHHC5Q9C0B5 715 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 NAA50Q9GZZ1 169 aaKnown RBP4.11□□□□□ -1.75
NEDD4-201ENST00000338963 VSX1Q9NZR4 365 aaPredicted RBP4.11□□□□□ -1.75
NEDD4-201ENST00000338963 SLC9A2Q9UBY0 812 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 U3KQ87 197 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 CDC42BPBQ9Y5S2 1711 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 MRC1P22897 1456 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 CD163L1Q9NR16 1453 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 ACOT8O14734 319 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 RGS10O43665 173 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 PRPSAP2O60256 369 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 PFKMP08237 780 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 KITP10721 976 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 ANXA3P12429 323 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 CKMT1AP12532 417 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 HNRNPLP14866 589 aaKnown RBP eCLIP4.11□□□□□ -1.75
NEDD4-201ENST00000338963 DDX6P26196 483 aaKnown RBP eCLIP4.11□□□□□ -1.75
NEDD4-201ENST00000338963 ARNTP27540 789 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 PTPN7P35236 360 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 ADRA1BP35368 520 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 IDH3AP50213 366 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 CSTF1Q05048 431 aaKnown RBP4.11□□□□□ -1.75
NEDD4-201ENST00000338963 DAG1Q14118 895 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 SSPNQ14714 243 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 TEX44Q53QW1 395 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 PAN3Q58A45 887 aaKnown RBP4.11□□□□□ -1.75
NEDD4-201ENST00000338963 EPGNQ6UW88 154 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 ZNF852Q6ZMS4 543 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 DDIASQ8IXT1 998 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 SPATA22Q8NHS9 363 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 LNX1Q8TBB1 728 aaPredicted RBP4.11□□□□□ -1.75
NEDD4-201ENST00000338963 ASB15Q8WXK1 588 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 SUCLG2Q96I99 432 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 ZNF594Q96JF6 807 aaPredicted RBP4.11□□□□□ -1.75
NEDD4-201ENST00000338963 METTL9Q9H1A3 318 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 ALG13Q9NP73 1137 aaKnown RBP4.11□□□□□ -1.75
NEDD4-201ENST00000338963 BRD7Q9NPI1 651 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 EQTNQ9NQ60 294 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 XPNPEP3Q9NQH7 507 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 NIT2Q9NQR4 276 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 VWDEQ8N2E2 1590 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 FAM205AQ6ZU69 1335 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 ANKRD63C9JTQ0 380 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 BRINP1O60477 761 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 F9P00740 461 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 CPB1P15086 417 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 NR2F2P24468 414 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 CRATP43155 626 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 MAGEA2P43356 314 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 MAGEA6P43360 314 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 ERFP50548 548 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 GTF2BQ00403 316 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 ELP6Q0PNE2 266 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 COQ5Q5HYK3 327 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 GPR155Q7Z3F1 870 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 RAVER1Q8IY67 606 aaKnown RBP4.11□□□□□ -1.75
NEDD4-201ENST00000338963 IFNL2Q8IZJ0 200 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 CPXCR1Q8N123 301 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 YIPF7Q8N8F6 280 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 NLGN2Q8NFZ4 835 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 OXER1Q8TDS5 423 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 MRPL48Q96GC5 212 aaKnown RBP4.11□□□□□ -1.75
NEDD4-201ENST00000338963 PRR11Q96HE9 360 aaPredicted RBP4.11□□□□□ -1.75
NEDD4-201ENST00000338963 GPR137Q96N19 417 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 BBS2Q9BXC9 721 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 MED28Q9H204 178 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 PPIL3Q9H2H8 161 aaKnown RBP4.11□□□□□ -1.75
NEDD4-201ENST00000338963 PCDH10Q9P2E7 1040 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 NIPSNAP3AQ9UFN0 247 aaPredicted RBP4.11□□□□□ -1.75
NEDD4-201ENST00000338963 AURKCQ9UQB9 309 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 RAP2CQ9Y3L5 183 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 PSAT1Q9Y617 370 aa4.11□□□□□ -1.75
NEDD4-201ENST00000338963 V9GY48 417 aaPredicted RBP4.11□□□□□ -1.75
NEDD4-201ENST00000338963 TRABD2BA6NFA1 517 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 TREHO43280 583 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 RBBP9O75884 186 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 ITGAVP06756 1048 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 RFC3P40938 356 aa4.1□□□□□ -1.75
NEDD4-201ENST00000338963 CTSKP43235 329 aa4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms