RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 A0A0G2JMP0 313 aa13.31□□□□□ -0.28
SKA3-201ENST00000298260 SLC22A3O75751 556 aa13.31□□□□□ -0.28
SKA3-201ENST00000298260 ARIH2O95376 493 aa13.31□□□□□ -0.28
SKA3-201ENST00000298260 PRKACBP22694 351 aa13.31□□□□□ -0.28
SKA3-201ENST00000298260 IGFBP6P24592 240 aaPredicted RBP13.31□□□□□ -0.28
SKA3-201ENST00000298260 ACVR2AP27037 513 aa13.31□□□□□ -0.28
SKA3-201ENST00000298260 AGTR2P50052 363 aa13.31□□□□□ -0.28
SKA3-201ENST00000298260 ST13P50502 369 aaKnown RBP13.31□□□□□ -0.28
SKA3-201ENST00000298260 GABARAPL2P60520 117 aa13.31□□□□□ -0.28
SKA3-201ENST00000298260 CHRNEQ04844 493 aa13.31□□□□□ -0.28
SKA3-201ENST00000298260 YWHAHQ04917 246 aaPredicted RBP13.31□□□□□ -0.28
SKA3-201ENST00000298260 FSCN1Q16658 493 aaKnown RBP13.31□□□□□ -0.28
SKA3-201ENST00000298260 XRRA1Q6P2D8 792 aa13.31□□□□□ -0.28
SKA3-201ENST00000298260 PRR23CQ6ZRP0 262 aa13.31□□□□□ -0.28
SKA3-201ENST00000298260 NRARPQ7Z6K4 114 aa13.31□□□□□ -0.28
SKA3-201ENST00000298260 CNTN4Q8IWV2 1026 aa13.31□□□□□ -0.28
SKA3-201ENST00000298260 TMEM199Q8N511 208 aa13.31□□□□□ -0.28
SKA3-201ENST00000298260 PPHLN1Q8NEY8 458 aaKnown RBP13.31□□□□□ -0.28
SKA3-201ENST00000298260 OR10A6Q8NH74 314 aa13.31□□□□□ -0.28
SKA3-201ENST00000298260 COPS5Q92905 334 aa13.31□□□□□ -0.28
SKA3-201ENST00000298260 Q96MT0 163 aa13.31□□□□□ -0.28
SKA3-201ENST00000298260 SIK2Q9H0K1 926 aa13.31□□□□□ -0.28
SKA3-201ENST00000298260 ENTPD7Q9NQZ7 604 aa13.31□□□□□ -0.28
SKA3-201ENST00000298260 C8orf4Q9NR00 106 aa13.31□□□□□ -0.28
SKA3-201ENST00000298260 TMEFF2Q9UIK5 374 aaPredicted RBP13.31□□□□□ -0.28
SKA3-201ENST00000298260 ITM2BQ9Y287 266 aa13.31□□□□□ -0.28
SKA3-201ENST00000298260 BRCA1P38398 1863 aaKnown RBP13.31□□□□□ -0.28
SKA3-201ENST00000298260 CENPBD1B2RD01 187 aa13.31□□□□□ -0.28
SKA3-201ENST00000298260 ARVCFO00192 962 aa13.31□□□□□ -0.28
SKA3-201ENST00000298260 DFNA5O60443 496 aa13.31□□□□□ -0.28
SKA3-201ENST00000298260 PRSS56P0CW18 603 aa13.31□□□□□ -0.28
SKA3-201ENST00000298260 GADD45AP24522 165 aa13.31□□□□□ -0.28
SKA3-201ENST00000298260 TGFBR2P37173 567 aa13.31□□□□□ -0.28
SKA3-201ENST00000298260 HTR3AP46098 478 aa13.31□□□□□ -0.28
SKA3-201ENST00000298260 ARSDP51689 593 aa13.31□□□□□ -0.28
SKA3-201ENST00000298260 ZNF135P52742 658 aaPredicted RBP13.31□□□□□ -0.28
SKA3-201ENST00000298260 GBX1Q14549 363 aa13.31□□□□□ -0.28
SKA3-201ENST00000298260 IRF3Q14653 427 aa13.31□□□□□ -0.28
SKA3-201ENST00000298260 CDK10Q15131 360 aa13.31□□□□□ -0.28
SKA3-201ENST00000298260 RGMBQ6NW40 437 aa13.31□□□□□ -0.28
SKA3-201ENST00000298260 CYP20A1Q6UW02 462 aa13.31□□□□□ -0.28
SKA3-201ENST00000298260 CYP4Z1Q86W10 505 aa13.31□□□□□ -0.28
SKA3-201ENST00000298260 GOLM1Q8NBJ4 401 aa13.31□□□□□ -0.28
SKA3-201ENST00000298260 LRRC3Q9BY71 257 aa13.31□□□□□ -0.28
SKA3-201ENST00000298260 GOLGA2P5Q9HBQ8 144 aa13.31□□□□□ -0.28
SKA3-201ENST00000298260 ADGRE2Q9UHX3 823 aa13.31□□□□□ -0.28
SKA3-201ENST00000298260 TSR3Q9UJK0 312 aaKnown RBP13.31□□□□□ -0.28
SKA3-201ENST00000298260 KIAA1257Q9ULG3 409 aa13.31□□□□□ -0.28
SKA3-201ENST00000298260 NAALAD2Q9Y3Q0 740 aa13.31□□□□□ -0.28
SKA3-201ENST00000298260 SNX8Q9Y5X2 465 aa13.31□□□□□ -0.28
SKA3-201ENST00000298260 A0A096LPI6 279 aa13.3□□□□□ -0.28
SKA3-201ENST00000298260 CENPXA8MT69 81 aa13.3□□□□□ -0.28
SKA3-201ENST00000298260 FZD9O00144 591 aa13.3□□□□□ -0.28
SKA3-201ENST00000298260 DSCR3O14972 297 aa13.3□□□□□ -0.28
SKA3-201ENST00000298260 NDST3O95803 873 aa13.3□□□□□ -0.28
SKA3-201ENST00000298260 ANXA6P08133 673 aa13.3□□□□□ -0.28
SKA3-201ENST00000298260 MYCLP1P12525 358 aaPredicted RBP13.3□□□□□ -0.28
SKA3-201ENST00000298260 HOXD8P13378 290 aaPredicted RBP13.3□□□□□ -0.28
SKA3-201ENST00000298260 C21orf33P30042 268 aaPredicted RBP13.3□□□□□ -0.28
SKA3-201ENST00000298260 DCTP40126 519 aa13.3□□□□□ -0.28
SKA3-201ENST00000298260 CRISP3P54108 245 aa13.3□□□□□ -0.28
SKA3-201ENST00000298260 FCGRTP55899 365 aa13.3□□□□□ -0.28
SKA3-201ENST00000298260 GNG2P59768 71 aa13.3□□□□□ -0.28
SKA3-201ENST00000298260 SLAMF1Q13291 335 aa13.3□□□□□ -0.28
SKA3-201ENST00000298260 UBE2J2Q8N2K1 259 aa13.3□□□□□ -0.28
SKA3-201ENST00000298260 TCAIMQ8N3R3 496 aa13.3□□□□□ -0.28
SKA3-201ENST00000298260 ANKK1Q8NFD2 765 aa13.3□□□□□ -0.28
SKA3-201ENST00000298260 MAP6Q96JE9 813 aa13.3□□□□□ -0.28
SKA3-201ENST00000298260 ST6GAL2Q96JF0 529 aa13.3□□□□□ -0.28
SKA3-201ENST00000298260 COQ7Q99807 217 aa13.3□□□□□ -0.28
SKA3-201ENST00000298260 ACTR8Q9H981 624 aa13.3□□□□□ -0.28
SKA3-201ENST00000298260 ACOT13Q9NPJ3 140 aa13.3□□□□□ -0.28
SKA3-201ENST00000298260 STAP1Q9ULZ2 295 aa13.3□□□□□ -0.28
SKA3-201ENST00000298260 COL11A1P12107 1806 aaPredicted RBP13.3□□□□□ -0.28
SKA3-201ENST00000298260 H0Y626 953 aa13.3□□□□□ -0.28
SKA3-201ENST00000298260 ZW10O43264 779 aa13.3□□□□□ -0.28
SKA3-201ENST00000298260 SCO1O75880 301 aa13.3□□□□□ -0.28
SKA3-201ENST00000298260 TRIM16O95361 564 aa13.3□□□□□ -0.28
SKA3-201ENST00000298260 MATN4O95460 622 aa13.3□□□□□ -0.28
SKA3-201ENST00000298260 HTR1EP28566 365 aa13.3□□□□□ -0.28
SKA3-201ENST00000298260 KPNA2P52292 529 aaKnown RBP13.3□□□□□ -0.28
SKA3-201ENST00000298260 SLC35A2P78381 396 aa13.3□□□□□ -0.28
SKA3-201ENST00000298260 NEK10Q6ZWH5 1172 aa13.3□□□□□ -0.28
SKA3-201ENST00000298260 LACC1Q8IV20 430 aa13.3□□□□□ -0.28
SKA3-201ENST00000298260 HID1Q8IV36 788 aa13.3□□□□□ -0.28
SKA3-201ENST00000298260 PHACTR4Q8IZ21 702 aa13.3□□□□□ -0.28
SKA3-201ENST00000298260 DTX3Q8N9I9 347 aa13.3□□□□□ -0.28
SKA3-201ENST00000298260 PROKR1Q8TCW9 393 aa13.3□□□□□ -0.28
SKA3-201ENST00000298260 CCDC126Q96EE4 140 aa13.3□□□□□ -0.28
SKA3-201ENST00000298260 SLC47A1Q96FL8 570 aa13.3□□□□□ -0.28
SKA3-201ENST00000298260 FSD1LQ9BXM9 530 aa13.3□□□□□ -0.28
SKA3-201ENST00000298260 VAPAQ9P0L0 249 aa13.3□□□□□ -0.28
SKA3-201ENST00000298260 IKZF3Q9UKT9 509 aa13.3□□□□□ -0.28
SKA3-201ENST00000298260 KRT87PA6NCN2 255 aa13.29□□□□□ -0.28
SKA3-201ENST00000298260 YJEFN3A6XGL0 299 aa13.29□□□□□ -0.28
SKA3-201ENST00000298260 GSTA4O15217 222 aa13.29□□□□□ -0.28
SKA3-201ENST00000298260 SEMA3DO95025 777 aa13.29□□□□□ -0.28
SKA3-201ENST00000298260 MTHFD2P13995 350 aa13.29□□□□□ -0.28
SKA3-201ENST00000298260 CBLP22681 906 aa13.29□□□□□ -0.28
SKA3-201ENST00000298260 AZGP1P25311 298 aaKnown RBP13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms