RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 RPL5P46777 297 aaKnown RBP18.08■□□□□ 0.48
SHKBP1-201ENST00000291842 PPP3CCP48454 512 aa18.08■□□□□ 0.48
SHKBP1-201ENST00000291842 STK19P49842 368 aaPredicted RBP18.08■□□□□ 0.48
SHKBP1-201ENST00000291842 PLOD1Q02809 727 aaPredicted RBP18.08■□□□□ 0.48
SHKBP1-201ENST00000291842 LMAN2Q12907 356 aa18.08■□□□□ 0.48
SHKBP1-201ENST00000291842 BNIP2Q12982 314 aa18.08■□□□□ 0.48
SHKBP1-201ENST00000291842 INPP5AQ14642 412 aa18.08■□□□□ 0.48
SHKBP1-201ENST00000291842 NANOGP8Q6NSW7 305 aa18.08■□□□□ 0.48
SHKBP1-201ENST00000291842 CERS6Q6ZMG9 384 aa18.08■□□□□ 0.48
SHKBP1-201ENST00000291842 RBM44Q6ZP01 1051 aaKnown RBP18.08■□□□□ 0.48
SHKBP1-201ENST00000291842 ADAMTSL2Q86TH1 951 aa18.08■□□□□ 0.48
SHKBP1-201ENST00000291842 CBR4Q8N4T8 237 aa18.08■□□□□ 0.48
SHKBP1-201ENST00000291842 GRIN3AQ8TCU5 1115 aa18.08■□□□□ 0.48
SHKBP1-201ENST00000291842 TRIM54Q9BYV2 358 aa18.08■□□□□ 0.48
SHKBP1-201ENST00000291842 ZNF696Q9H7X3 374 aa18.08■□□□□ 0.48
SHKBP1-201ENST00000291842 NANOGQ9H9S0 305 aa18.08■□□□□ 0.48
SHKBP1-201ENST00000291842 ZFC3H1O60293 1989 aaKnown RBP18.08■□□□□ 0.48
SHKBP1-201ENST00000291842 AQP12BA6NM10 295 aa18.08■□□□□ 0.48
SHKBP1-201ENST00000291842 GFRA2O00451 464 aa18.08■□□□□ 0.48
SHKBP1-201ENST00000291842 TAPBPO15533 448 aa18.08■□□□□ 0.48
SHKBP1-201ENST00000291842 CTSOP43234 321 aaPredicted RBP18.08■□□□□ 0.48
SHKBP1-201ENST00000291842 DGKQP52824 942 aa18.08■□□□□ 0.48
SHKBP1-201ENST00000291842 DEFB103AP81534 67 aa18.08■□□□□ 0.48
SHKBP1-201ENST00000291842 PCBP2Q15366 365 aaKnown RBP eCLIP18.08■□□□□ 0.486e-9■■■■■ 40.7
SHKBP1-201ENST00000291842 RFTN2Q52LD8 501 aaPredicted RBP18.08■□□□□ 0.48
SHKBP1-201ENST00000291842 PDCD4Q53EL6 469 aaKnown RBP18.08■□□□□ 0.48
SHKBP1-201ENST00000291842 COQ5Q5HYK3 327 aa18.08■□□□□ 0.48
SHKBP1-201ENST00000291842 DGKKQ5KSL6 1271 aa18.08■□□□□ 0.48
SHKBP1-201ENST00000291842 LCN8Q6JVE9 175 aa18.08■□□□□ 0.48
SHKBP1-201ENST00000291842 MBOAT1Q6ZNC8 495 aa18.08■□□□□ 0.48
SHKBP1-201ENST00000291842 GAREM2Q75VX8 874 aa18.08■□□□□ 0.48
SHKBP1-201ENST00000291842 RALGPS2Q86X27 583 aaPredicted RBP18.08■□□□□ 0.48
SHKBP1-201ENST00000291842 AQP12AQ8IXF9 295 aa18.08■□□□□ 0.48
SHKBP1-201ENST00000291842 ADGRG5Q8IZF4 528 aa18.08■□□□□ 0.48
SHKBP1-201ENST00000291842 ANKFN1Q8N957 763 aa18.08■□□□□ 0.48
SHKBP1-201ENST00000291842 VWCEQ96DN2 955 aa18.08■□□□□ 0.48
SHKBP1-201ENST00000291842 OSBPL11Q9BXB4 747 aa18.08■□□□□ 0.48
SHKBP1-201ENST00000291842 CFHR5Q9BXR6 569 aa18.08■□□□□ 0.48
SHKBP1-201ENST00000291842 TRIM15Q9C019 465 aa18.08■□□□□ 0.48
SHKBP1-201ENST00000291842 MRPL17Q9NRX2 175 aaKnown RBP18.08■□□□□ 0.48
SHKBP1-201ENST00000291842 CRLS1Q9UJA2 301 aa18.08■□□□□ 0.48
SHKBP1-201ENST00000291842 LEF1Q9UJU2 399 aaPredicted RBP18.08■□□□□ 0.48
SHKBP1-201ENST00000291842 POLR3HQ9Y535 204 aaPredicted RBP18.08■□□□□ 0.48
SHKBP1-201ENST00000291842 CCDC160A6NGH7 325 aa18.07■□□□□ 0.48
SHKBP1-201ENST00000291842 RAD51BO15315 384 aa18.07■□□□□ 0.48
SHKBP1-201ENST00000291842 TEX28O15482 410 aa18.07■□□□□ 0.48
SHKBP1-201ENST00000291842 RSL1D1O76021 490 aaKnown RBP18.07■□□□□ 0.48
SHKBP1-201ENST00000291842 BMP2P12643 396 aa18.07■□□□□ 0.48
SHKBP1-201ENST00000291842 IL10P22301 178 aa18.07■□□□□ 0.48
SHKBP1-201ENST00000291842 RPL10P27635 214 aaKnown RBP18.07■□□□□ 0.48
SHKBP1-201ENST00000291842 SLC5A9Q2M3M2 681 aa18.07■□□□□ 0.48
SHKBP1-201ENST00000291842 SNX20Q7Z614 316 aa18.07■□□□□ 0.48
SHKBP1-201ENST00000291842 MILR1Q7Z6M3 343 aa18.07■□□□□ 0.48
SHKBP1-201ENST00000291842 EPHX4Q8IUS5 362 aa18.07■□□□□ 0.48
SHKBP1-201ENST00000291842 CMTR2Q8IYT2 770 aaKnown RBP18.07■□□□□ 0.48
SHKBP1-201ENST00000291842 ADGRG2Q8IZP9 1017 aa18.07■□□□□ 0.48
SHKBP1-201ENST00000291842 RBFAQ8N0V3 343 aa18.07■□□□□ 0.48
SHKBP1-201ENST00000291842 PDLIM5Q96HC4 596 aaKnown RBP18.07■□□□□ 0.48
SHKBP1-201ENST00000291842 PFDN4Q9NQP4 134 aa18.07■□□□□ 0.48
SHKBP1-201ENST00000291842 FARSBQ9NSD9 589 aaKnown RBP18.07■□□□□ 0.48
SHKBP1-201ENST00000291842 DUS2Q9NX74 493 aaKnown RBP18.07■□□□□ 0.48
SHKBP1-201ENST00000291842 GNPTGQ9UJJ9 305 aa18.07■□□□□ 0.48
SHKBP1-201ENST00000291842 TANC1Q9C0D5 1861 aa18.07■□□□□ 0.48
SHKBP1-201ENST00000291842 GLYATL1P3A0A0U1RQE8 302 aa18.06■□□□□ 0.48
SHKBP1-201ENST00000291842 FAM234BA2RU67 622 aa18.06■□□□□ 0.48
SHKBP1-201ENST00000291842 FKTNO75072 461 aa18.06■□□□□ 0.48
SHKBP1-201ENST00000291842 ZNF821O75541 412 aaPredicted RBP18.06■□□□□ 0.48
SHKBP1-201ENST00000291842 ITGALP20701 1170 aa18.06■□□□□ 0.48
SHKBP1-201ENST00000291842 NAA20P61599 178 aa18.06■□□□□ 0.48
SHKBP1-201ENST00000291842 ROR2Q01974 943 aaKnown RBP18.06■□□□□ 0.48
SHKBP1-201ENST00000291842 FOXM1Q08050 763 aa18.06■□□□□ 0.48
SHKBP1-201ENST00000291842 AP5B1Q2VPB7 878 aa18.06■□□□□ 0.48
SHKBP1-201ENST00000291842 CWF19L1Q69YN2 538 aaKnown RBP18.06■□□□□ 0.48
SHKBP1-201ENST00000291842 TCEAL8Q8IYN2 117 aa18.06■□□□□ 0.48
SHKBP1-201ENST00000291842 PPM1MQ96MI6 270 aa18.06■□□□□ 0.48
SHKBP1-201ENST00000291842 MRPS26Q9BYN8 205 aaKnown RBP18.06■□□□□ 0.48
SHKBP1-201ENST00000291842 ACTL8Q9H568 366 aa18.06■□□□□ 0.48
SHKBP1-201ENST00000291842 INTS6Q9UL03 887 aaKnown RBP18.06■□□□□ 0.48
SHKBP1-201ENST00000291842 TMCO1Q9UM00 188 aa18.06■□□□□ 0.48
SHKBP1-201ENST00000291842 COL4A6Q14031 1691 aa18.06■□□□□ 0.48
SHKBP1-201ENST00000291842 NPIPB15A6NHN6 443 aaPredicted RBP18.06■□□□□ 0.48
SHKBP1-201ENST00000291842 LSM1O15116 133 aaKnown RBP18.06■□□□□ 0.48
SHKBP1-201ENST00000291842 HNRNPRO43390 633 aaKnown RBP18.06■□□□□ 0.48
SHKBP1-201ENST00000291842 LATS1O95835 1130 aa18.06■□□□□ 0.48
SHKBP1-201ENST00000291842 ACRV1P26436 265 aa18.06■□□□□ 0.48
SHKBP1-201ENST00000291842 HMOX2P30519 316 aa18.06■□□□□ 0.48
SHKBP1-201ENST00000291842 GRIK2Q13002 908 aa18.06■□□□□ 0.48
SHKBP1-201ENST00000291842 TRAF3Q13114 568 aa18.06■□□□□ 0.48
SHKBP1-201ENST00000291842 PRKG2Q13237 762 aa18.06■□□□□ 0.48
SHKBP1-201ENST00000291842 CDKN3Q16667 212 aa18.06■□□□□ 0.48
SHKBP1-201ENST00000291842 SGO1Q5FBB7 561 aa18.06■□□□□ 0.48
SHKBP1-201ENST00000291842 LRRC73Q5JTD7 316 aa18.06■□□□□ 0.48
SHKBP1-201ENST00000291842 PPP4R4Q6NUP7 873 aa18.06■□□□□ 0.48
SHKBP1-201ENST00000291842 CYP20A1Q6UW02 462 aa18.06■□□□□ 0.48
SHKBP1-201ENST00000291842 TSPEARQ8WU66 669 aa18.06■□□□□ 0.48
SHKBP1-201ENST00000291842 RNF208Q9H0X6 261 aa18.06■□□□□ 0.48
SHKBP1-201ENST00000291842 CAAP1Q9H8G2 361 aa18.06■□□□□ 0.48
SHKBP1-201ENST00000291842 AGPAT4Q9NRZ5 378 aa18.06■□□□□ 0.48
SHKBP1-201ENST00000291842 ZIM2Q9NZV7 527 aa18.06■□□□□ 0.48
SHKBP1-201ENST00000291842 TNPO3Q9Y5L0 923 aaKnown RBP18.06■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms