RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 EPB41L1Q9H4G0 881 aa18.91■□□□□ 0.62
CLN3-260ENST00000637578 ZNF106Q9H2Y7 1883 aaKnown RBP18.9■□□□□ 0.62
CLN3-260ENST00000637578 GOLGA6L10A0A0M3HER8 536 aa18.9■□□□□ 0.62
CLN3-260ENST00000637578 KIF2AO00139 706 aaPredicted RBP18.9■□□□□ 0.62
CLN3-260ENST00000637578 DUX1O43812 170 aa18.9■□□□□ 0.62
CLN3-260ENST00000637578 POP7O75817 140 aaKnown RBP18.9■□□□□ 0.62
CLN3-260ENST00000637578 IFNB1P01574 187 aa18.9■□□□□ 0.62
CLN3-260ENST00000637578 VCLP18206 1134 aa18.9■□□□□ 0.62
CLN3-260ENST00000637578 PSMA3P25788 255 aa18.9■□□□□ 0.62
CLN3-260ENST00000637578 DEKP35659 375 aaKnown RBP18.9■□□□□ 0.62
CLN3-260ENST00000637578 HADHAP40939 763 aa18.9■□□□□ 0.62
CLN3-260ENST00000637578 UCNP55089 124 aa18.9■□□□□ 0.62
CLN3-260ENST00000637578 TTC27Q6P3X3 843 aa18.9■□□□□ 0.62
CLN3-260ENST00000637578 TMEM220Q6QAJ8 160 aa18.9■□□□□ 0.62
CLN3-260ENST00000637578 AMZ2Q86W34 360 aa18.9■□□□□ 0.62
CLN3-260ENST00000637578 SNRNP27Q8WVK2 155 aaKnown RBP18.9■□□□□ 0.62
CLN3-260ENST00000637578 AHCYL2Q96HN2 611 aaKnown RBP18.9■□□□□ 0.62
CLN3-260ENST00000637578 ZNF514Q96K75 400 aaPredicted RBP18.9■□□□□ 0.62
CLN3-260ENST00000637578 ASB8Q9H765 288 aa18.9■□□□□ 0.62
CLN3-260ENST00000637578 AKAP7Q9P0M2 348 aaPredicted RBP18.9■□□□□ 0.62
CLN3-260ENST00000637578 DRG1Q9Y295 367 aaKnown RBP18.9■□□□□ 0.62
CLN3-260ENST00000637578 LOC400499M0QZD8 3231 aa18.9■□□□□ 0.62
CLN3-260ENST00000637578 KLK10O43240 276 aa18.89■□□□□ 0.62
CLN3-260ENST00000637578 TUBB4AP04350 444 aa18.89■□□□□ 0.62
CLN3-260ENST00000637578 FGF3P11487 239 aaPredicted RBP18.89■□□□□ 0.62
CLN3-260ENST00000637578 CCL4P13236 92 aa18.89■□□□□ 0.62
CLN3-260ENST00000637578 RPL10P27635 214 aaKnown RBP18.89■□□□□ 0.62
CLN3-260ENST00000637578 CLN3Q13286 438 aa18.89■□□□□ 0.62
CLN3-260ENST00000637578 TMEM26Q6ZUK4 368 aa18.89■□□□□ 0.62
CLN3-260ENST00000637578 ARHGAP22Q7Z5H3 698 aa18.89■□□□□ 0.62
CLN3-260ENST00000637578 PRUNE1Q86TP1 453 aa18.89■□□□□ 0.62
CLN3-260ENST00000637578 USP7Q93009 1102 aa18.89■□□□□ 0.62
CLN3-260ENST00000637578 SLC40A1Q9NP59 571 aa18.89■□□□□ 0.62
CLN3-260ENST00000637578 WDR37Q9Y2I8 494 aa18.89■□□□□ 0.62
CLN3-260ENST00000637578 CACNA1GO43497 2377 aa18.89■□□□□ 0.61
CLN3-260ENST00000637578 PRAMEF33A0A0G2JMD5 474 aa18.89■□□□□ 0.61
CLN3-260ENST00000637578 OR2AG2A6NM03 316 aa18.89■□□□□ 0.61
CLN3-260ENST00000637578 ERI2A8K979 691 aaKnown RBP18.89■□□□□ 0.61
CLN3-260ENST00000637578 PDZK1P1A8MUH7 402 aa18.89■□□□□ 0.61
CLN3-260ENST00000637578 C9orf172C9J069 976 aa18.89■□□□□ 0.61
CLN3-260ENST00000637578 H7C0S8 307 aa18.89■□□□□ 0.61
CLN3-260ENST00000637578 SGTAO43765 313 aa18.89■□□□□ 0.61
CLN3-260ENST00000637578 PRAMEF10O60809 474 aa18.89■□□□□ 0.61
CLN3-260ENST00000637578 PHF2O75151 1096 aa18.89■□□□□ 0.61
CLN3-260ENST00000637578 MPSTP25325 297 aa18.89■□□□□ 0.61
CLN3-260ENST00000637578 PAFAH1B1P43034 410 aa18.89■□□□□ 0.61
CLN3-260ENST00000637578 CLCA4Q14CN2 919 aa18.89■□□□□ 0.61
CLN3-260ENST00000637578 BROXQ5VW32 411 aa18.89■□□□□ 0.61
CLN3-260ENST00000637578 SNX20Q7Z614 316 aa18.89■□□□□ 0.61
CLN3-260ENST00000637578 GLIS1Q8NBF1 620 aa18.89■□□□□ 0.61
CLN3-260ENST00000637578 AGBL5Q8NDL9 886 aa18.89■□□□□ 0.61
CLN3-260ENST00000637578 FCRL3Q96P31 734 aaPredicted RBP18.89■□□□□ 0.61
CLN3-260ENST00000637578 TBC1D10AQ9BXI6 508 aa18.89■□□□□ 0.61
CLN3-260ENST00000637578 POT1Q9NUX5 634 aa18.89■□□□□ 0.61
CLN3-260ENST00000637578 OGFRQ9NZT2 677 aa18.89■□□□□ 0.61
CLN3-260ENST00000637578 RNF14Q9UBS8 474 aa18.89■□□□□ 0.61
CLN3-260ENST00000637578 PCDHGA3Q9Y5H0 932 aa18.89■□□□□ 0.61
CLN3-260ENST00000637578 AHCTF1Q8WYP5 2266 aa18.88■□□□□ 0.61
CLN3-260ENST00000637578 TRBV5-4A0A0C4DH59 114 aa18.88■□□□□ 0.61
CLN3-260ENST00000637578 KLHL33A6NCF5 533 aa18.88■□□□□ 0.61
CLN3-260ENST00000637578 MROH6A6NGR9 719 aa18.88■□□□□ 0.61
CLN3-260ENST00000637578 VIPP01282 170 aa18.88■□□□□ 0.61
CLN3-260ENST00000637578 ETS1P14921 441 aa18.88■□□□□ 0.61
CLN3-260ENST00000637578 TPH1P17752 444 aa18.88■□□□□ 0.61
CLN3-260ENST00000637578 MSH3P20585 1137 aa18.88■□□□□ 0.61
CLN3-260ENST00000637578 COILP38432 576 aaPredicted RBP18.88■□□□□ 0.61
CLN3-260ENST00000637578 DRG2P55039 364 aaKnown RBP18.88■□□□□ 0.61
CLN3-260ENST00000637578 TMPRSS3P57727 454 aa18.88■□□□□ 0.61
CLN3-260ENST00000637578 SEPT7Q16181 437 aaKnown RBP18.88■□□□□ 0.61
CLN3-260ENST00000637578 KCTD19Q17RG1 926 aaPredicted RBP18.88■□□□□ 0.61
CLN3-260ENST00000637578 GPR33Q49SQ1 333 aa18.88■□□□□ 0.61
CLN3-260ENST00000637578 BCL7AQ4VC05 210 aa18.88■□□□□ 0.61
CLN3-260ENST00000637578 METRNLQ641Q3 311 aa18.88■□□□□ 0.61
CLN3-260ENST00000637578 XKR5Q6UX68 686 aa18.88■□□□□ 0.61
CLN3-260ENST00000637578 FAM83HQ6ZRV2 1179 aaPredicted RBP18.88■□□□□ 0.61
CLN3-260ENST00000637578 LINC00523Q86TU6 105 aa18.88■□□□□ 0.61
CLN3-260ENST00000637578 JAMLQ86YT9 394 aa18.88■□□□□ 0.61
CLN3-260ENST00000637578 RBM12BQ8IXT5 1001 aaKnown RBP18.88■□□□□ 0.61
CLN3-260ENST00000637578 NXPE1Q8N323 547 aa18.88■□□□□ 0.61
CLN3-260ENST00000637578 CCDC89Q8N998 374 aa18.88■□□□□ 0.61
CLN3-260ENST00000637578 NCSTNQ92542 709 aa18.88■□□□□ 0.61
CLN3-260ENST00000637578 ULK4Q96C45 1275 aa18.88■□□□□ 0.61
CLN3-260ENST00000637578 SGF29Q96ES7 293 aa18.88■□□□□ 0.61
CLN3-260ENST00000637578 LINC00615Q96LM1 132 aaPredicted RBP18.88■□□□□ 0.61
CLN3-260ENST00000637578 ETNK1Q9HBU6 452 aa18.88■□□□□ 0.61
CLN3-260ENST00000637578 NLE1Q9NVX2 485 aaPredicted RBP18.88■□□□□ 0.61
CLN3-260ENST00000637578 FOXJ2Q9P0K8 574 aa18.88■□□□□ 0.61
CLN3-260ENST00000637578 OR52A4PA6NMU1 304 aa18.87■□□□□ 0.61
CLN3-260ENST00000637578 AGRPO00253 132 aa18.87■□□□□ 0.61
CLN3-260ENST00000637578 SUN1O94901 812 aa18.87■□□□□ 0.61
CLN3-260ENST00000637578 MAPK10P53779 464 aa18.87■□□□□ 0.61
CLN3-260ENST00000637578 TMPRSS15P98073 1019 aa18.87■□□□□ 0.61
CLN3-260ENST00000637578 SOWAHCQ53LP3 525 aaPredicted RBP18.87■□□□□ 0.61
CLN3-260ENST00000637578 FNBP1LQ5T0N5 605 aa18.87■□□□□ 0.61
CLN3-260ENST00000637578 CCDC137Q6PK04 289 aaKnown RBP18.87■□□□□ 0.61
CLN3-260ENST00000637578 GSTA5Q7RTV2 222 aa18.87■□□□□ 0.61
CLN3-260ENST00000637578 GPR155Q7Z3F1 870 aa18.87■□□□□ 0.61
CLN3-260ENST00000637578 BMPERQ8N8U9 685 aa18.87■□□□□ 0.61
CLN3-260ENST00000637578 DNAJC1Q96KC8 554 aaKnown RBP18.87■□□□□ 0.61
CLN3-260ENST00000637578 TAAR9Q96RI9 348 aa18.87■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms