RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 PKP3Q9Y446 797 aa17.25■□□□□ 0.35
SHKBP1-223ENST00000600552 PCDHB3Q9Y5E6 796 aa17.25■□□□□ 0.35
SHKBP1-223ENST00000600552 ALG6Q9Y672 507 aa17.25■□□□□ 0.35
SHKBP1-223ENST00000600552 CFAP20Q9Y6A4 193 aaKnown RBP17.25■□□□□ 0.35
SHKBP1-223ENST00000600552 GLYATL1P3A0A0U1RQE8 302 aa17.24■□□□□ 0.35
SHKBP1-223ENST00000600552 LOC285095A0A1B0GVY8 99 aa17.24■□□□□ 0.35
SHKBP1-223ENST00000600552 CDC14CA4D256 554 aa17.24■□□□□ 0.35
SHKBP1-223ENST00000600552 AKR1B15C9JRZ8 316 aaPredicted RBP17.24■□□□□ 0.35
SHKBP1-223ENST00000600552 H7C0C1 242 aa17.24■□□□□ 0.35
SHKBP1-223ENST00000600552 HMGCLP35914 325 aa17.24■□□□□ 0.35
SHKBP1-223ENST00000600552 CAPZBP47756 277 aa17.24■□□□□ 0.35
SHKBP1-223ENST00000600552 ATP5OP48047 213 aa17.24■□□□□ 0.35
SHKBP1-223ENST00000600552 MARCKSL1P49006 195 aa17.24■□□□□ 0.35
SHKBP1-223ENST00000600552 SEPT6Q14141 434 aa17.24■□□□□ 0.35
SHKBP1-223ENST00000600552 NFE2L1Q14494 772 aa17.24■□□□□ 0.35
SHKBP1-223ENST00000600552 KCNAB1Q14722 419 aa17.24■□□□□ 0.35
SHKBP1-223ENST00000600552 FNBP1LQ5T0N5 605 aa17.24■□□□□ 0.35
SHKBP1-223ENST00000600552 AGAP9Q5VTM2 703 aa17.24■□□□□ 0.35
SHKBP1-223ENST00000600552 FAM83HQ6ZRV2 1179 aaPredicted RBP17.24■□□□□ 0.35
SHKBP1-223ENST00000600552 C11orf96Q7Z7L8 435 aa17.24■□□□□ 0.35
SHKBP1-223ENST00000600552 BEND7Q8N7W2 519 aaPredicted RBP17.24■□□□□ 0.35
SHKBP1-223ENST00000600552 COL26A1Q96A83 441 aa17.24■□□□□ 0.35
SHKBP1-223ENST00000600552 ABHD17AQ96GS6 310 aa17.24■□□□□ 0.35
SHKBP1-223ENST00000600552 FICDQ9BVA6 458 aa17.24■□□□□ 0.35
SHKBP1-223ENST00000600552 FSD1LQ9BXM9 530 aa17.24■□□□□ 0.35
SHKBP1-223ENST00000600552 EPN3Q9H201 632 aa17.24■□□□□ 0.35
SHKBP1-223ENST00000600552 TRABDQ9H4I3 376 aa17.24■□□□□ 0.35
SHKBP1-223ENST00000600552 IMP3Q9NV31 184 aaKnown RBP17.24■□□□□ 0.35
SHKBP1-223ENST00000600552 IL17CQ9P0M4 197 aa17.24■□□□□ 0.35
SHKBP1-223ENST00000600552 HECTD1Q9ULT8 2610 aa17.24■□□□□ 0.35
SHKBP1-223ENST00000600552 MACROD2A1Z1Q3 448 aa17.23■□□□□ 0.35
SHKBP1-223ENST00000600552 PIPSLA2A3N6 862 aa17.23■□□□□ 0.35
SHKBP1-223ENST00000600552 STX7O15400 261 aaKnown RBP17.23■□□□□ 0.35
SHKBP1-223ENST00000600552 PSTPIP1O43586 416 aa17.23■□□□□ 0.35
SHKBP1-223ENST00000600552 SPAG6O75602 509 aa17.23■□□□□ 0.35
SHKBP1-223ENST00000600552 ZRANB2O95218 330 aaKnown RBP eCLIP17.23■□□□□ 0.35
SHKBP1-223ENST00000600552 AGTP01019 485 aa17.23■□□□□ 0.35
SHKBP1-223ENST00000600552 MSH3P20585 1137 aa17.23■□□□□ 0.35
SHKBP1-223ENST00000600552 PTMSP20962 102 aa17.23■□□□□ 0.35
SHKBP1-223ENST00000600552 XRCC4Q13426 336 aa17.23■□□□□ 0.35
SHKBP1-223ENST00000600552 SLC1A5Q15758 541 aa17.23■□□□□ 0.35
SHKBP1-223ENST00000600552 RPE65Q16518 533 aa17.23■□□□□ 0.35
SHKBP1-223ENST00000600552 TFDP3Q5H9I0 405 aa17.23■□□□□ 0.35
SHKBP1-223ENST00000600552 LDLRAP1Q5SW96 308 aa17.23■□□□□ 0.35
SHKBP1-223ENST00000600552 GPRC6AQ5T6X5 926 aa17.23■□□□□ 0.35
SHKBP1-223ENST00000600552 WASH2PQ6VEQ5 465 aa17.23■□□□□ 0.35
SHKBP1-223ENST00000600552 PPP1R3BQ86XI6 285 aa17.23■□□□□ 0.35
SHKBP1-223ENST00000600552 CNGA4Q8IV77 575 aa17.23■□□□□ 0.35
SHKBP1-223ENST00000600552 RCOR2Q8IZ40 523 aa17.23■□□□□ 0.35
SHKBP1-223ENST00000600552 SIDT2Q8NBJ9 832 aaKnown RBP17.23■□□□□ 0.35
SHKBP1-223ENST00000600552 FCRL5Q96RD9 977 aa17.23■□□□□ 0.35
SHKBP1-223ENST00000600552 APOL2Q9BQE5 337 aa17.23■□□□□ 0.35
SHKBP1-223ENST00000600552 ZCCHC2Q9C0B9 1178 aaKnown RBP17.23■□□□□ 0.35
SHKBP1-223ENST00000600552 WASH6PQ9NQA3 447 aa17.23■□□□□ 0.35
SHKBP1-223ENST00000600552 HACD3Q9P035 362 aa17.23■□□□□ 0.35
SHKBP1-223ENST00000600552 INTUQ9ULD6 942 aa17.23■□□□□ 0.35
SHKBP1-223ENST00000600552 IGHV5-51A0A0C4DH38 117 aa17.22■□□□□ 0.35
SHKBP1-223ENST00000600552 TOX3O15405 576 aaPredicted RBP17.22■□□□□ 0.35
SHKBP1-223ENST00000600552 MTSS1O43312 755 aa17.22■□□□□ 0.35
SHKBP1-223ENST00000600552 POLBP06746 335 aa17.22■□□□□ 0.35
SHKBP1-223ENST00000600552 NR1D1P20393 614 aa17.22■□□□□ 0.35
SHKBP1-223ENST00000600552 IL11RAQ14626 422 aa17.22■□□□□ 0.35
SHKBP1-223ENST00000600552 DUS1LQ6P1R4 473 aaKnown RBP17.22■□□□□ 0.35
SHKBP1-223ENST00000600552 CERS6Q6ZMG9 384 aa17.22■□□□□ 0.35
SHKBP1-223ENST00000600552 PRSS42Q7Z5A4 293 aa17.22■□□□□ 0.35
SHKBP1-223ENST00000600552 TMEM135Q86UB9 458 aa17.22■□□□□ 0.35
SHKBP1-223ENST00000600552 RBM12BQ8IXT5 1001 aaKnown RBP17.22■□□□□ 0.35
SHKBP1-223ENST00000600552 ZNF398Q8TD17 642 aa17.22■□□□□ 0.35
SHKBP1-223ENST00000600552 TWSG1Q9GZX9 223 aa17.22■□□□□ 0.35
SHKBP1-223ENST00000600552 WWP1Q9H0M0 922 aa17.22■□□□□ 0.35
SHKBP1-223ENST00000600552 PDE7BQ9NP56 450 aa17.22■□□□□ 0.35
SHKBP1-223ENST00000600552 TUBD1Q9UJT1 453 aa17.22■□□□□ 0.35
SHKBP1-223ENST00000600552 RARRES3Q9UL19 164 aa17.22■□□□□ 0.35
SHKBP1-223ENST00000600552 PADI1Q9ULC6 663 aa17.22■□□□□ 0.35
SHKBP1-223ENST00000600552 ARL5AQ9Y689 179 aa17.22■□□□□ 0.35
SHKBP1-223ENST00000600552 hCG_1818297A0A087WSY0 165 aa17.21■□□□□ 0.35
SHKBP1-223ENST00000600552 UBA6A0AVT1 1052 aaPredicted RBP17.21■□□□□ 0.35
SHKBP1-223ENST00000600552 PRR19A6NJB7 356 aa17.21■□□□□ 0.35
SHKBP1-223ENST00000600552 DDX3YO15523 660 aaKnown RBP17.21■□□□□ 0.35
SHKBP1-223ENST00000600552 EPOP01588 193 aa17.21■□□□□ 0.35
SHKBP1-223ENST00000600552 NTRK1P04629 796 aa17.21■□□□□ 0.35
SHKBP1-223ENST00000600552 FURINP09958 794 aa17.21■□□□□ 0.35
SHKBP1-223ENST00000600552 EBLN1P0CF75 366 aa17.21■□□□□ 0.35
SHKBP1-223ENST00000600552 FOLR1P15328 257 aa17.21■□□□□ 0.35
SHKBP1-223ENST00000600552 NELFEP18615 380 aaKnown RBP17.21■□□□□ 0.35
SHKBP1-223ENST00000600552 FECHP22830 423 aa17.21■□□□□ 0.35
SHKBP1-223ENST00000600552 RBL1P28749 1068 aa17.21■□□□□ 0.35
SHKBP1-223ENST00000600552 ARCN1P48444 511 aaKnown RBP17.21■□□□□ 0.35
SHKBP1-223ENST00000600552 TMPRSS15P98073 1019 aa17.21■□□□□ 0.35
SHKBP1-223ENST00000600552 MPP3Q13368 585 aa17.21■□□□□ 0.35
SHKBP1-223ENST00000600552 TUBB3Q13509 450 aa17.21■□□□□ 0.35
SHKBP1-223ENST00000600552 ITGA9Q13797 1035 aa17.21■□□□□ 0.35
SHKBP1-223ENST00000600552 MAP7Q14244 749 aa17.21■□□□□ 0.35
SHKBP1-223ENST00000600552 KRT33BQ14525 404 aa17.21■□□□□ 0.35
SHKBP1-223ENST00000600552 GSE1Q14687 1217 aa17.21■□□□□ 0.35
SHKBP1-223ENST00000600552 TAZQ16635 292 aa17.21■□□□□ 0.35
SHKBP1-223ENST00000600552 LACTB2Q53H82 288 aaPredicted RBP17.21■□□□□ 0.35
SHKBP1-223ENST00000600552 ZDHHC20Q5W0Z9 365 aa17.21■□□□□ 0.35
SHKBP1-223ENST00000600552 ARMC6Q6NXE6 501 aa17.21■□□□□ 0.35
SHKBP1-223ENST00000600552 CT55Q8WUE5 264 aa17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms