RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 VIPP01282 170 aa12.81□□□□□ -0.36
LIG1-212ENST00000596549 ANKRD34CP0C6C1 535 aa12.81□□□□□ -0.36
LIG1-212ENST00000596549 TYRP1P17643 537 aa12.81□□□□□ -0.36
LIG1-212ENST00000596549 LPOP22079 712 aaPredicted RBP12.81□□□□□ -0.36
LIG1-212ENST00000596549 IDSP22304 550 aa12.81□□□□□ -0.36
LIG1-212ENST00000596549 PBLDP30039 288 aaPredicted RBP12.81□□□□□ -0.36
LIG1-212ENST00000596549 TSPAN7P41732 249 aa12.81□□□□□ -0.36
LIG1-212ENST00000596549 NFE2L1Q14494 772 aa12.81□□□□□ -0.36
LIG1-212ENST00000596549 PRPSAP1Q14558 356 aa12.81□□□□□ -0.36
LIG1-212ENST00000596549 DET1Q7L5Y6 550 aa12.81□□□□□ -0.36
LIG1-212ENST00000596549 TRIM48Q8IWZ4 208 aa12.81□□□□□ -0.36
LIG1-212ENST00000596549 UBL4BQ8N7F7 174 aa12.81□□□□□ -0.36
LIG1-212ENST00000596549 FAM71DQ8N9W8 422 aa12.81□□□□□ -0.36
LIG1-212ENST00000596549 ATG4AQ8WYN0 398 aa12.81□□□□□ -0.36
LIG1-212ENST00000596549 FERMT1Q9BQL6 677 aa12.81□□□□□ -0.36
LIG1-212ENST00000596549 TMEM121Q9BTD3 319 aa12.81□□□□□ -0.36
LIG1-212ENST00000596549 EPB41L1Q9H4G0 881 aa12.81□□□□□ -0.36
LIG1-212ENST00000596549 ARNT2Q9HBZ2 717 aa12.81□□□□□ -0.36
LIG1-212ENST00000596549 SLC40A1Q9NP59 571 aa12.81□□□□□ -0.36
LIG1-212ENST00000596549 PCDHGA4Q9Y5G9 962 aa12.81□□□□□ -0.36
LIG1-212ENST00000596549 POP7O75817 140 aaKnown RBP12.8□□□□□ -0.36
LIG1-212ENST00000596549 UBXN7O94888 489 aa12.8□□□□□ -0.36
LIG1-212ENST00000596549 AKT1P31749 480 aa12.8□□□□□ -0.36
LIG1-212ENST00000596549 CETN2P41208 172 aa12.8□□□□□ -0.36
LIG1-212ENST00000596549 CAPZBP47756 277 aa12.8□□□□□ -0.36
LIG1-212ENST00000596549 LEPRP48357 1165 aaKnown RBP12.8□□□□□ -0.36
LIG1-212ENST00000596549 PPP1CAP62136 330 aa12.8□□□□□ -0.36
LIG1-212ENST00000596549 TMPRSS15P98073 1019 aa12.8□□□□□ -0.36
LIG1-212ENST00000596549 LY6DQ14210 128 aa12.8□□□□□ -0.36
LIG1-212ENST00000596549 MANEAQ5SRI9 462 aa12.8□□□□□ -0.36
LIG1-212ENST00000596549 FNBP1LQ5T0N5 605 aa12.8□□□□□ -0.36
LIG1-212ENST00000596549 TMEM164Q5U3C3 297 aa12.8□□□□□ -0.36
LIG1-212ENST00000596549 DUS1LQ6P1R4 473 aaKnown RBP12.8□□□□□ -0.36
LIG1-212ENST00000596549 TMEM220Q6QAJ8 160 aa12.8□□□□□ -0.36
LIG1-212ENST00000596549 AMZ2Q86W34 360 aa12.8□□□□□ -0.36
LIG1-212ENST00000596549 ZNF843Q8N446 348 aa12.8□□□□□ -0.36
LIG1-212ENST00000596549 TTC13Q8NBP0 860 aa12.8□□□□□ -0.36
LIG1-212ENST00000596549 CCDC112Q8NEF3 446 aa12.8□□□□□ -0.36
LIG1-212ENST00000596549 ZNF398Q8TD17 642 aa12.8□□□□□ -0.36
LIG1-212ENST00000596549 NKD1Q969G9 470 aa12.8□□□□□ -0.36
LIG1-212ENST00000596549 RTP4Q96DX8 246 aa12.8□□□□□ -0.36
LIG1-212ENST00000596549 C9orf72Q96LT7 481 aa12.8□□□□□ -0.36
LIG1-212ENST00000596549 TTC25Q96NG3 672 aa12.8□□□□□ -0.36
LIG1-212ENST00000596549 CTRCQ99895 268 aa12.8□□□□□ -0.36
LIG1-212ENST00000596549 SPRY4Q9C004 299 aa12.8□□□□□ -0.36
LIG1-212ENST00000596549 ASB8Q9H765 288 aa12.8□□□□□ -0.36
LIG1-212ENST00000596549 SLC39A1Q9NY26 324 aa12.8□□□□□ -0.36
LIG1-212ENST00000596549 PSMD13Q9UNM6 376 aa12.8□□□□□ -0.36
LIG1-212ENST00000596549 KALRNO60229 2985 aa12.79□□□□□ -0.36
LIG1-212ENST00000596549 GOLGA6L9A6NEM1 432 aa12.79□□□□□ -0.36
LIG1-212ENST00000596549 EIF4E1BA6NMX2 242 aaKnown RBP12.79□□□□□ -0.36
LIG1-212ENST00000596549 C2orf81A6NN90 581 aa12.79□□□□□ -0.36
LIG1-212ENST00000596549 PRSS56P0CW18 603 aa12.79□□□□□ -0.36
LIG1-212ENST00000596549 VCLP18206 1134 aa12.79□□□□□ -0.36
LIG1-212ENST00000596549 RAB15P59190 212 aa12.79□□□□□ -0.36
LIG1-212ENST00000596549 MC2RQ01718 297 aa12.79□□□□□ -0.36
LIG1-212ENST00000596549 BCL7AQ4VC05 210 aa12.79□□□□□ -0.36
LIG1-212ENST00000596549 TAF1BQ53T94 588 aaPredicted RBP12.79□□□□□ -0.36
LIG1-212ENST00000596549 ARHGEF18Q6ZSZ5 1173 aa12.79□□□□□ -0.36
LIG1-212ENST00000596549 PLXDC1Q8IUK5 500 aa12.79□□□□□ -0.36
LIG1-212ENST00000596549 TXLNBQ8N3L3 684 aa12.79□□□□□ -0.36
LIG1-212ENST00000596549 TAB3Q8N5C8 712 aaPredicted RBP12.79□□□□□ -0.36
LIG1-212ENST00000596549 LILRA3Q8N6C8 439 aaPredicted RBP12.79□□□□□ -0.36
LIG1-212ENST00000596549 CXorf40BQ96DE9 158 aa12.79□□□□□ -0.36
LIG1-212ENST00000596549 SGF29Q96ES7 293 aa12.79□□□□□ -0.36
LIG1-212ENST00000596549 WBP1Q96G27 269 aa12.79□□□□□ -0.36
LIG1-212ENST00000596549 DNAJC1Q96KC8 554 aaKnown RBP12.79□□□□□ -0.36
LIG1-212ENST00000596549 TGM7Q96PF1 710 aa12.79□□□□□ -0.36
LIG1-212ENST00000596549 PPP1R2P1Q96PQ5 205 aa12.79□□□□□ -0.36
LIG1-212ENST00000596549 PIH1D1Q9NWS0 290 aaKnown RBP12.79□□□□□ -0.36
LIG1-212ENST00000596549 CFAP20Q9Y6A4 193 aaKnown RBP12.79□□□□□ -0.36
LIG1-212ENST00000596549 H7C0S8 307 aa12.78□□□□□ -0.36
LIG1-212ENST00000596549 CAPN5O15484 640 aaPredicted RBP12.78□□□□□ -0.36
LIG1-212ENST00000596549 KIF1CO43896 1103 aaKnown RBP12.78□□□□□ -0.36
LIG1-212ENST00000596549 RAD1O60671 282 aa12.78□□□□□ -0.36
LIG1-212ENST00000596549 KCNJ13O60928 360 aa12.78□□□□□ -0.36
LIG1-212ENST00000596549 ZNF189O75820 626 aaPredicted RBP12.78□□□□□ -0.36
LIG1-212ENST00000596549 CRTAMO95727 393 aa12.78□□□□□ -0.36
LIG1-212ENST00000596549 MSH3P20585 1137 aa12.78□□□□□ -0.36
LIG1-212ENST00000596549 MC4RP32245 332 aa12.78□□□□□ -0.36
LIG1-212ENST00000596549 HALP42357 657 aa12.78□□□□□ -0.36
LIG1-212ENST00000596549 PRLHRP49683 370 aa12.78□□□□□ -0.36
LIG1-212ENST00000596549 CDKN1CP49918 316 aaPredicted RBP12.78□□□□□ -0.36
LIG1-212ENST00000596549 CYP4F2P78329 520 aa12.78□□□□□ -0.36
LIG1-212ENST00000596549 OASLQ15646 514 aaKnown RBP12.78□□□□□ -0.36
LIG1-212ENST00000596549 RPE65Q16518 533 aa12.78□□□□□ -0.36
LIG1-212ENST00000596549 LONRF2Q1L5Z9 754 aa12.78□□□□□ -0.36
LIG1-212ENST00000596549 PARP6Q2NL67 630 aa12.78□□□□□ -0.36
LIG1-212ENST00000596549 LINC00303Q3SY05 128 aa12.78□□□□□ -0.36
LIG1-212ENST00000596549 DCAF12Q5T6F0 453 aa12.78□□□□□ -0.36
LIG1-212ENST00000596549 METRNLQ641Q3 311 aa12.78□□□□□ -0.36
LIG1-212ENST00000596549 RBM12BQ8IXT5 1001 aaKnown RBP12.78□□□□□ -0.36
LIG1-212ENST00000596549 NXPE1Q8N323 547 aa12.78□□□□□ -0.36
LIG1-212ENST00000596549 SPDYE1Q8NFV5 336 aaPredicted RBP12.78□□□□□ -0.36
LIG1-212ENST00000596549 RNF31Q96EP0 1072 aa12.78□□□□□ -0.36
LIG1-212ENST00000596549 LINC00615Q96LM1 132 aaPredicted RBP12.78□□□□□ -0.36
LIG1-212ENST00000596549 RMDN2Q96LZ7 410 aa12.78□□□□□ -0.36
LIG1-212ENST00000596549 C19orf43Q9BQ61 176 aa12.78□□□□□ -0.36
LIG1-212ENST00000596549 ZNF768Q9H5H4 540 aaKnown RBP12.78□□□□□ -0.36
LIG1-212ENST00000596549 FAM96AQ9H5X1 160 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms