RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 NCSTNQ92542 709 aa23.47■■□□□ 1.35
SHMT1-206ENST00000579558 CXorf40BQ96DE9 158 aa23.47■■□□□ 1.35
SHMT1-206ENST00000579558 SGF29Q96ES7 293 aa23.47■■□□□ 1.35
SHMT1-206ENST00000579558 CCDC97Q96F63 343 aaPredicted RBP23.47■■□□□ 1.35
SHMT1-206ENST00000579558 CRELD1Q96HD1 420 aa23.47■■□□□ 1.35
SHMT1-206ENST00000579558 TBC1D10AQ9BXI6 508 aa23.47■■□□□ 1.35
SHMT1-206ENST00000579558 PCDHGA7Q9Y5G6 932 aa23.47■■□□□ 1.35
SHMT1-206ENST00000579558 OR52A4PA6NMU1 304 aa23.46■■□□□ 1.35
SHMT1-206ENST00000579558 GAS8O95995 478 aa23.46■■□□□ 1.35
SHMT1-206ENST00000579558 ZSCAN5DPP0CG00 497 aa23.46■■□□□ 1.35
SHMT1-206ENST00000579558 RALBP11234 206 aa23.46■■□□□ 1.35
SHMT1-206ENST00000579558 ETV5P41161 510 aa23.46■■□□□ 1.35
SHMT1-206ENST00000579558 MAPK10P53779 464 aa23.46■■□□□ 1.35
SHMT1-206ENST00000579558 TLE3Q04726 772 aa23.46■■□□□ 1.35
SHMT1-206ENST00000579558 SEMA5AQ13591 1074 aa23.46■■□□□ 1.35
SHMT1-206ENST00000579558 NFE2L1Q14494 772 aa23.46■■□□□ 1.35
SHMT1-206ENST00000579558 GPR33Q49SQ1 333 aa23.46■■□□□ 1.35
SHMT1-206ENST00000579558 ZRANB3Q5FWF4 1079 aa23.46■■□□□ 1.35
SHMT1-206ENST00000579558 FAM83HQ6ZRV2 1179 aaPredicted RBP23.46■■□□□ 1.35
SHMT1-206ENST00000579558 TMEM26Q6ZUK4 368 aa23.46■■□□□ 1.35
SHMT1-206ENST00000579558 NAT14Q8WUY8 206 aa23.46■■□□□ 1.35
SHMT1-206ENST00000579558 COPS8Q99627 209 aa23.46■■□□□ 1.35
SHMT1-206ENST00000579558 EPB41L1Q9H4G0 881 aa23.46■■□□□ 1.35
SHMT1-206ENST00000579558 UCK1Q9HA47 277 aa23.46■■□□□ 1.35
SHMT1-206ENST00000579558 POT1Q9NUX5 634 aa23.46■■□□□ 1.35
SHMT1-206ENST00000579558 DRG1Q9Y295 367 aaKnown RBP23.46■■□□□ 1.35
SHMT1-206ENST00000579558 WDR37Q9Y2I8 494 aa23.46■■□□□ 1.35
SHMT1-206ENST00000579558 CCDC78A2IDD5 438 aa23.45■■□□□ 1.34
SHMT1-206ENST00000579558 CFAP99D6REC4 459 aa23.45■■□□□ 1.34
SHMT1-206ENST00000579558 H7C0S8 307 aa23.45■■□□□ 1.34
SHMT1-206ENST00000579558 KLK10O43240 276 aa23.45■■□□□ 1.34
SHMT1-206ENST00000579558 SUN1O94901 812 aa23.45■■□□□ 1.34
SHMT1-206ENST00000579558 CLCA4Q14CN2 919 aa23.45■■□□□ 1.34
SHMT1-206ENST00000579558 BCL7AQ4VC05 210 aa23.45■■□□□ 1.34
SHMT1-206ENST00000579558 SNAP47Q5SQN1 464 aa23.45■■□□□ 1.34
SHMT1-206ENST00000579558 BROXQ5VW32 411 aa23.45■■□□□ 1.34
SHMT1-206ENST00000579558 WDR74Q6RFH5 385 aaPredicted RBP23.45■■□□□ 1.34
SHMT1-206ENST00000579558 HEXDCQ8WVB3 486 aa23.45■■□□□ 1.34
SHMT1-206ENST00000579558 CDKN2AIPNLQ96HQ2 116 aa23.45■■□□□ 1.34
SHMT1-206ENST00000579558 DPH1Q9BZG8 443 aa23.45■■□□□ 1.34
SHMT1-206ENST00000579558 MROH6A6NGR9 719 aa23.44■■□□□ 1.34
SHMT1-206ENST00000579558 NVLO15381 856 aaKnown RBP23.44■■□□□ 1.34
SHMT1-206ENST00000579558 APRTP07741 180 aa23.44■■□□□ 1.34
SHMT1-206ENST00000579558 CCL4P13236 92 aa23.44■■□□□ 1.34
SHMT1-206ENST00000579558 CSTF2P33240 577 aaKnown RBP eCLIP23.44■■□□□ 1.34
SHMT1-206ENST00000579558 RPL22P35268 128 aaKnown RBP23.44■■□□□ 1.34
SHMT1-206ENST00000579558 CCDC38Q502W7 563 aa23.44■■□□□ 1.34
SHMT1-206ENST00000579558 MICALCLQ6ZW33 695 aa23.44■■□□□ 1.34
SHMT1-206ENST00000579558 TAS2R42Q7RTR8 314 aa23.44■■□□□ 1.34
SHMT1-206ENST00000579558 GSTA5Q7RTV2 222 aa23.44■■□□□ 1.34
SHMT1-206ENST00000579558 AGBL5Q8NDL9 886 aa23.44■■□□□ 1.34
SHMT1-206ENST00000579558 USP7Q93009 1102 aa23.44■■□□□ 1.34
SHMT1-206ENST00000579558 ZDHHC3Q9NYG2 299 aa23.44■■□□□ 1.34
SHMT1-206ENST00000579558 PDP2Q9P2J9 529 aa23.44■■□□□ 1.34
SHMT1-206ENST00000579558 PSMD13Q9UNM6 376 aa23.44■■□□□ 1.34
SHMT1-206ENST00000579558 TRBV5-4A0A0C4DH59 114 aa23.43■■□□□ 1.34
SHMT1-206ENST00000579558 PRAMEF33A0A0G2JMD5 474 aa23.43■■□□□ 1.34
SHMT1-206ENST00000579558 MGAT4DA6NG13 374 aa23.43■■□□□ 1.34
SHMT1-206ENST00000579558 PRAMEF10O60809 474 aa23.43■■□□□ 1.34
SHMT1-206ENST00000579558 GRIA1P42261 906 aa23.43■■□□□ 1.34
SHMT1-206ENST00000579558 CDKN1CP49918 316 aaPredicted RBP23.43■■□□□ 1.34
SHMT1-206ENST00000579558 SKIDA1Q1XH10 827 aa23.43■■□□□ 1.34
SHMT1-206ENST00000579558 SERPINA9Q86WD7 417 aa23.43■■□□□ 1.34
SHMT1-206ENST00000579558 RBM12BQ8IXT5 1001 aaKnown RBP23.43■■□□□ 1.34
SHMT1-206ENST00000579558 OR2L2Q8NH16 312 aa23.43■■□□□ 1.34
SHMT1-206ENST00000579558 SLC40A1Q9NP59 571 aa23.43■■□□□ 1.34
SHMT1-206ENST00000579558 HOMER3Q9NSC5 361 aa23.43■■□□□ 1.34
SHMT1-206ENST00000579558 EIF2AK3Q9NZJ5 1116 aaKnown RBP23.43■■□□□ 1.34
SHMT1-206ENST00000579558 FAM8A1Q9UBU6 413 aa23.43■■□□□ 1.34
SHMT1-206ENST00000579558 JRKLQ9Y4A0 524 aa23.43■■□□□ 1.34
SHMT1-206ENST00000579558 ITPR1Q14643 2758 aa23.43■■□□□ 1.34
SHMT1-206ENST00000579558 HEATR9A2RTY3 570 aa23.42■■□□□ 1.34
SHMT1-206ENST00000579558 KLHL33A6NCF5 533 aa23.42■■□□□ 1.34
SHMT1-206ENST00000579558 A8MU76 341 aa23.42■■□□□ 1.34
SHMT1-206ENST00000579558 SGTAO43765 313 aa23.42■■□□□ 1.34
SHMT1-206ENST00000579558 UBXN7O94888 489 aa23.42■■□□□ 1.34
SHMT1-206ENST00000579558 PRSS56P0CW18 603 aa23.42■■□□□ 1.34
SHMT1-206ENST00000579558 ATP1B2P14415 290 aaPredicted RBP23.42■■□□□ 1.34
SHMT1-206ENST00000579558 TYRP1P17643 537 aa23.42■■□□□ 1.34
SHMT1-206ENST00000579558 AMD1P17707 334 aa23.42■■□□□ 1.34
SHMT1-206ENST00000579558 ACRV1P26436 265 aa23.42■■□□□ 1.34
SHMT1-206ENST00000579558 KCNJ1P48048 391 aa23.42■■□□□ 1.34
SHMT1-206ENST00000579558 PRLHRP49683 370 aa23.42■■□□□ 1.34
SHMT1-206ENST00000579558 CACNG1Q06432 222 aa23.42■■□□□ 1.34
SHMT1-206ENST00000579558 LAMB3Q13751 1172 aa23.42■■□□□ 1.34
SHMT1-206ENST00000579558 RPE65Q16518 533 aa23.42■■□□□ 1.34
SHMT1-206ENST00000579558 METRNLQ641Q3 311 aa23.42■■□□□ 1.34
SHMT1-206ENST00000579558 C4orf22Q6V702 233 aa23.42■■□□□ 1.34
SHMT1-206ENST00000579558 LINC00615Q96LM1 132 aaPredicted RBP23.42■■□□□ 1.34
SHMT1-206ENST00000579558 CASS4Q9NQ75 786 aa23.42■■□□□ 1.34
SHMT1-206ENST00000579558 KLHL3Q9UH77 587 aa23.42■■□□□ 1.34
SHMT1-206ENST00000579558 NBEAQ8NFP9 2946 aa23.41■■□□□ 1.34
SHMT1-206ENST00000579558 IGLV3-16A0A075B6K0 115 aa23.41■■□□□ 1.34
SHMT1-206ENST00000579558 ZSCAN12O43309 604 aa23.41■■□□□ 1.34
SHMT1-206ENST00000579558 FGF3P11487 239 aaPredicted RBP23.41■■□□□ 1.34
SHMT1-206ENST00000579558 PSMA3P25788 255 aa23.41■■□□□ 1.34
SHMT1-206ENST00000579558 MSNP26038 577 aaKnown RBP23.41■■□□□ 1.34
SHMT1-206ENST00000579558 ARSDP51689 593 aa23.41■■□□□ 1.34
SHMT1-206ENST00000579558 BASP1P80723 227 aaKnown RBP23.41■■□□□ 1.34
SHMT1-206ENST00000579558 GPR18Q14330 331 aa23.41■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms