RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 PROSER1Q86XN7 944 aa19.14■□□□□ 0.65
SS18-209ENST00000578595 C17orf53Q8N3J3 647 aaPredicted RBP19.14■□□□□ 0.65
SS18-209ENST00000578595 TTC1Q99614 292 aa19.14■□□□□ 0.65
SS18-209ENST00000578595 VPS37BQ9H9H4 285 aa19.14■□□□□ 0.65
SS18-209ENST00000578595 IMP3Q9NV31 184 aaKnown RBP19.14■□□□□ 0.65
SS18-209ENST00000578595 ANAPC5Q9UJX4 755 aa19.14■□□□□ 0.65
SS18-209ENST00000578595 RAXQ9Y2V3 346 aa19.14■□□□□ 0.65
SS18-209ENST00000578595 SAR1BQ9Y6B6 198 aa19.14■□□□□ 0.65
SS18-209ENST00000578595 DNMT3AQ9Y6K1 912 aaPredicted RBP19.14■□□□□ 0.65
SS18-209ENST00000578595 TCRBV7S3A2A0A539 114 aa19.13■□□□□ 0.65
SS18-209ENST00000578595 GOLGA8MH3BSY2 632 aa19.13■□□□□ 0.65
SS18-209ENST00000578595 KCNJ13O60928 360 aa19.13■□□□□ 0.65
SS18-209ENST00000578595 POLBP06746 335 aa19.13■□□□□ 0.65
SS18-209ENST00000578595 SLC35G4P0C7Q5 338 aa19.13■□□□□ 0.65
SS18-209ENST00000578595 JMJD7P0C870 316 aa19.13■□□□□ 0.65
SS18-209ENST00000578595 MPSTP25325 297 aa19.13■□□□□ 0.65
SS18-209ENST00000578595 NPY2RP49146 381 aa19.13■□□□□ 0.65
SS18-209ENST00000578595 FNTAP49354 379 aa19.13■□□□□ 0.65
SS18-209ENST00000578595 GPLD1P80108 840 aa19.13■□□□□ 0.65
SS18-209ENST00000578595 NR1D2Q14995 579 aa19.13■□□□□ 0.65
SS18-209ENST00000578595 DBN1Q16643 649 aa19.13■□□□□ 0.65
SS18-209ENST00000578595 FASTKD1Q53R41 847 aaKnown RBP19.13■□□□□ 0.65
SS18-209ENST00000578595 PCID2Q5JVF3 399 aa19.13■□□□□ 0.65
SS18-209ENST00000578595 SNAP47Q5SQN1 464 aa19.13■□□□□ 0.65
SS18-209ENST00000578595 CHCHD2P9Q5T1J5 151 aaPredicted RBP19.13■□□□□ 0.65
SS18-209ENST00000578595 FAM83HQ6ZRV2 1179 aaPredicted RBP19.13■□□□□ 0.65
SS18-209ENST00000578595 RAB11FIP2Q7L804 512 aa19.13■□□□□ 0.65
SS18-209ENST00000578595 JAMLQ86YT9 394 aa19.13■□□□□ 0.65
SS18-209ENST00000578595 OR13J1Q8NGT2 312 aa19.13■□□□□ 0.65
SS18-209ENST00000578595 ZNF778Q96MU6 729 aa19.13■□□□□ 0.65
SS18-209ENST00000578595 IL22Q9GZX6 179 aa19.13■□□□□ 0.65
SS18-209ENST00000578595 DDX47Q9H0S4 455 aaKnown RBP19.13■□□□□ 0.65
SS18-209ENST00000578595 SEMA6CQ9H3T2 930 aa19.13■□□□□ 0.65
SS18-209ENST00000578595 WDR70Q9NW82 654 aa19.13■□□□□ 0.65
SS18-209ENST00000578595 SYBUQ9NX95 663 aa19.13■□□□□ 0.65
SS18-209ENST00000578595 AKAP7Q9P0M2 348 aaPredicted RBP19.13■□□□□ 0.65
SS18-209ENST00000578595 ASIC3Q9UHC3 531 aa19.13■□□□□ 0.65
SS18-209ENST00000578595 TRBV5-4A0A0C4DH59 114 aa19.12■□□□□ 0.65
SS18-209ENST00000578595 MGAT4DA6NG13 374 aa19.12■□□□□ 0.65
SS18-209ENST00000578595 AGAP14A8MT82 685 aa19.12■□□□□ 0.65
SS18-209ENST00000578595 HGFP14210 728 aa19.12■□□□□ 0.65
SS18-209ENST00000578595 CD1CP29017 333 aa19.12■□□□□ 0.65
SS18-209ENST00000578595 CCKBRP32239 447 aa19.12■□□□□ 0.65
SS18-209ENST00000578595 FOXN2P32314 431 aa19.12■□□□□ 0.65
SS18-209ENST00000578595 PAFAH1B1P43034 410 aa19.12■□□□□ 0.65
SS18-209ENST00000578595 LSSP48449 732 aa19.12■□□□□ 0.65
SS18-209ENST00000578595 PRLHRP49683 370 aa19.12■□□□□ 0.65
SS18-209ENST00000578595 CDK16Q00536 496 aa19.12■□□□□ 0.65
SS18-209ENST00000578595 KCNJ11Q14654 390 aa19.12■□□□□ 0.65
SS18-209ENST00000578595 BCL7AQ4VC05 210 aa19.12■□□□□ 0.65
SS18-209ENST00000578595 TMPRSS9Q7Z410 1059 aa19.12■□□□□ 0.65
SS18-209ENST00000578595 KLHL7Q8IXQ5 586 aa19.12■□□□□ 0.65
SS18-209ENST00000578595 PIANPQ8IYJ0 282 aa19.12■□□□□ 0.65
SS18-209ENST00000578595 LSMEM2Q8N112 164 aa19.12■□□□□ 0.65
SS18-209ENST00000578595 FBXO39Q8N4B4 442 aa19.12■□□□□ 0.65
SS18-209ENST00000578595 NCSTNQ92542 709 aa19.12■□□□□ 0.65
SS18-209ENST00000578595 LIN37Q96GY3 246 aaPredicted RBP19.12■□□□□ 0.65
SS18-209ENST00000578595 TBC1D10AQ9BXI6 508 aa19.12■□□□□ 0.65
SS18-209ENST00000578595 WWP1Q9H0M0 922 aa19.12■□□□□ 0.65
SS18-209ENST00000578595 CHRAC1Q9NRG0 131 aa19.12■□□□□ 0.65
SS18-209ENST00000578595 POT1Q9NUX5 634 aa19.12■□□□□ 0.65
SS18-209ENST00000578595 SAMD15Q9P1V8 674 aa19.12■□□□□ 0.65
SS18-209ENST00000578595 PISDQ9UG56 409 aa19.12■□□□□ 0.65
SS18-209ENST00000578595 KLHL3Q9UH77 587 aa19.12■□□□□ 0.65
SS18-209ENST00000578595 WDR37Q9Y2I8 494 aa19.12■□□□□ 0.65
SS18-209ENST00000578595 LOXL2Q9Y4K0 774 aa19.12■□□□□ 0.65
SS18-209ENST00000578595 CFAP20Q9Y6A4 193 aaKnown RBP19.12■□□□□ 0.65
SS18-209ENST00000578595 PKD1L2Q7Z442 2459 aa19.11■□□□□ 0.65
SS18-209ENST00000578595 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP19.11■□□□□ 0.65
SS18-209ENST00000578595 PMS2P1A4D2B8 440 aa19.11■□□□□ 0.65
SS18-209ENST00000578595 PLD2O14939 933 aa19.11■□□□□ 0.65
SS18-209ENST00000578595 TNFSF15O95150 251 aa19.11■□□□□ 0.65
SS18-209ENST00000578595 BRAFP15056 766 aa19.11■□□□□ 0.65
SS18-209ENST00000578595 AMD1P17707 334 aa19.11■□□□□ 0.65
SS18-209ENST00000578595 XRCC1P18887 633 aaPredicted RBP19.11■□□□□ 0.65
SS18-209ENST00000578595 CSF2RBP32927 897 aa19.11■□□□□ 0.65
SS18-209ENST00000578595 SLC19A1P41440 591 aa19.11■□□□□ 0.65
SS18-209ENST00000578595 UBE2IP63279 158 aaKnown RBP19.11■□□□□ 0.65
SS18-209ENST00000578595 DMPKQ09013 629 aa19.11■□□□□ 0.65
SS18-209ENST00000578595 CLCA4Q14CN2 919 aa19.11■□□□□ 0.65
SS18-209ENST00000578595 PLCL1Q15111 1095 aa19.11■□□□□ 0.65
SS18-209ENST00000578595 AGAP9Q5VTM2 703 aa19.11■□□□□ 0.65
SS18-209ENST00000578595 ANKRD22Q5VYY1 191 aa19.11■□□□□ 0.65
SS18-209ENST00000578595 LRRC8BQ6P9F7 803 aa19.11■□□□□ 0.65
SS18-209ENST00000578595 ZNF449Q6P9G9 518 aa19.11■□□□□ 0.65
SS18-209ENST00000578595 ABRAXAS1Q6UWZ7 409 aa19.11■□□□□ 0.65
SS18-209ENST00000578595 CFAP206Q8IYR0 622 aa19.11■□□□□ 0.65
SS18-209ENST00000578595 CLDN19Q8N6F1 224 aa19.11■□□□□ 0.65
SS18-209ENST00000578595 RCBTB1Q8NDN9 531 aa19.11■□□□□ 0.65
SS18-209ENST00000578595 OR2L2Q8NH16 312 aa19.11■□□□□ 0.65
SS18-209ENST00000578595 OR4L1Q8NH43 312 aa19.11■□□□□ 0.65
SS18-209ENST00000578595 HM13Q8TCT9 377 aa19.11■□□□□ 0.65
SS18-209ENST00000578595 CCDC74BQ96LY2 380 aa19.11■□□□□ 0.65
SS18-209ENST00000578595 C12orf66Q96MD2 445 aa19.11■□□□□ 0.65
SS18-209ENST00000578595 CATSPERZQ9NTU4 200 aa19.11■□□□□ 0.65
SS18-209ENST00000578595 ZNF624Q9P2J8 865 aaPredicted RBP19.11■□□□□ 0.65
SS18-209ENST00000578595 RIMKLBQ9ULI2 386 aa19.11■□□□□ 0.65
SS18-209ENST00000578595 LILRA5A6NI73 299 aa19.1■□□□□ 0.65
SS18-209ENST00000578595 SRRM3A6NNA2 597 aaPredicted RBP19.1■□□□□ 0.65
SS18-209ENST00000578595 TMEM63AO94886 807 aa19.1■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms