RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 PRR23AA6NEV1 266 aa20.95■□□□□ 0.94
CLN3-209ENST00000561689 CCT8L1PA6NM43 557 aa20.95■□□□□ 0.94
CLN3-209ENST00000561689 TM7SF2O76062 418 aa20.95■□□□□ 0.94
CLN3-209ENST00000561689 IMPDH1P20839 514 aa20.95■□□□□ 0.94
CLN3-209ENST00000561689 CTSCP53634 463 aa20.95■□□□□ 0.94
CLN3-209ENST00000561689 NFKB2Q00653 900 aa20.95■□□□□ 0.94
CLN3-209ENST00000561689 HSPA14Q0VDF9 509 aa20.95■□□□□ 0.94
CLN3-209ENST00000561689 TMEM115Q12893 351 aaPredicted RBP20.95■□□□□ 0.94
CLN3-209ENST00000561689 TTLL9Q3SXZ7 439 aa20.95■□□□□ 0.94
CLN3-209ENST00000561689 HSF5Q4G112 596 aaPredicted RBP20.95■□□□□ 0.94
CLN3-209ENST00000561689 TRPM8Q7Z2W7 1104 aa20.95■□□□□ 0.94
CLN3-209ENST00000561689 GPSM1Q86YR5 675 aa20.95■□□□□ 0.94
CLN3-209ENST00000561689 MYO1HQ8N1T3 1032 aa20.95■□□□□ 0.94
CLN3-209ENST00000561689 PLA2G15Q8NCC3 412 aa20.95■□□□□ 0.94
CLN3-209ENST00000561689 PLCD4Q9BRC7 762 aa20.95■□□□□ 0.94
CLN3-209ENST00000561689 ILKAPQ9H0C8 392 aaPredicted RBP20.95■□□□□ 0.94
CLN3-209ENST00000561689 LRRC14BA6NHZ5 514 aa20.94■□□□□ 0.94
CLN3-209ENST00000561689 SYCE1LA8MT33 242 aa20.94■□□□□ 0.94
CLN3-209ENST00000561689 NPHS1O60500 1241 aa20.94■□□□□ 0.94
CLN3-209ENST00000561689 SIX3O95343 332 aaPredicted RBP20.94■□□□□ 0.94
CLN3-209ENST00000561689 AOAHP28039 575 aa20.94■□□□□ 0.94
CLN3-209ENST00000561689 HK3P52790 923 aa20.94■□□□□ 0.94
CLN3-209ENST00000561689 CCDC15Q0P6D6 951 aa20.94■□□□□ 0.94
CLN3-209ENST00000561689 FBXO48Q5FWF7 155 aa20.94■□□□□ 0.94
CLN3-209ENST00000561689 ZNF678Q5SXM1 525 aa20.94■□□□□ 0.94
CLN3-209ENST00000561689 PRPF38BQ5VTL8 546 aaKnown RBP20.94■□□□□ 0.94
CLN3-209ENST00000561689 TMEM92Q6UXU6 159 aa20.94■□□□□ 0.94
CLN3-209ENST00000561689 WDR75Q8IWA0 830 aaKnown RBP20.94■□□□□ 0.94
CLN3-209ENST00000561689 OR14C36Q8NHC7 312 aa20.94■□□□□ 0.94
CLN3-209ENST00000561689 FBRSQ9HAH7 460 aa20.94■□□□□ 0.94
CLN3-209ENST00000561689 AP2A2O94973 939 aa20.94■□□□□ 0.94
CLN3-209ENST00000561689 HERVK_113P63132 956 aa20.94■□□□□ 0.94
CLN3-209ENST00000561689 BOP1Q14137 746 aaKnown RBP20.94■□□□□ 0.94
CLN3-209ENST00000561689 FBXO43Q4G163 708 aa20.94■□□□□ 0.94
CLN3-209ENST00000561689 CYHR1Q6ZMK1 362 aa20.94■□□□□ 0.94
CLN3-209ENST00000561689 FBXO39Q8N4B4 442 aa20.94■□□□□ 0.94
CLN3-209ENST00000561689 SIPA1Q96FS4 1042 aa20.94■□□□□ 0.94
CLN3-209ENST00000561689 CNDP1Q96KN2 507 aa20.94■□□□□ 0.94
CLN3-209ENST00000561689 ERVK-6Q9BXR3 956 aa20.94■□□□□ 0.94
CLN3-209ENST00000561689 KCNK4Q9NYG8 393 aa20.94■□□□□ 0.94
CLN3-209ENST00000561689 FAM8A1Q9UBU6 413 aa20.94■□□□□ 0.94
CLN3-209ENST00000561689 ADAMTS6Q9UKP5 1117 aa20.94■□□□□ 0.94
CLN3-209ENST00000561689 SUPT7LO94864 414 aa20.93■□□□□ 0.94
CLN3-209ENST00000561689 UNC50Q53HI1 259 aa20.93■□□□□ 0.94
CLN3-209ENST00000561689 SBSNQ6UWP8 590 aa20.93■□□□□ 0.94
CLN3-209ENST00000561689 C10orf67Q8IYJ2 551 aa20.93■□□□□ 0.94
CLN3-209ENST00000561689 FITM2Q8N6M3 262 aa20.93■□□□□ 0.94
CLN3-209ENST00000561689 KLK6Q92876 244 aa20.93■□□□□ 0.94
CLN3-209ENST00000561689 L3HYPDHQ96EM0 354 aa20.93■□□□□ 0.94
CLN3-209ENST00000561689 LENG8Q96PV6 779 aaPredicted RBP20.93■□□□□ 0.94
CLN3-209ENST00000561689 OSBPL6Q9BZF3 934 aa20.93■□□□□ 0.94
CLN3-209ENST00000561689 ZDHHC2Q9UIJ5 367 aa20.93■□□□□ 0.94
CLN3-209ENST00000561689 ZFR2Q9UPR6 939 aaKnown RBP20.93■□□□□ 0.94
CLN3-209ENST00000561689 RAP2CQ9Y3L5 183 aa20.93■□□□□ 0.94
CLN3-209ENST00000561689 PCCBP05166 539 aa20.92■□□□□ 0.94
CLN3-209ENST00000561689 TSPAN8P19075 237 aa20.92■□□□□ 0.94
CLN3-209ENST00000561689 TGFBIQ15582 683 aa20.92■□□□□ 0.94
CLN3-209ENST00000561689 WSCD2Q2TBF2 565 aa20.92■□□□□ 0.94
CLN3-209ENST00000561689 MAVSQ7Z434 540 aa20.92■□□□□ 0.94
CLN3-209ENST00000561689 RAB44Q7Z6P3 723 aaPredicted RBP20.92■□□□□ 0.94
CLN3-209ENST00000561689 NLRP8Q86W28 1048 aa20.92■□□□□ 0.94
CLN3-209ENST00000561689 CCT6BQ92526 530 aa20.92■□□□□ 0.94
CLN3-209ENST00000561689 ELMO1Q92556 727 aa20.92■□□□□ 0.94
CLN3-209ENST00000561689 MSANTD3Q96H12 275 aa20.92■□□□□ 0.94
CLN3-209ENST00000561689 MRGPRX1Q96LB2 322 aa20.92■□□□□ 0.94
CLN3-209ENST00000561689 EBF4Q9BQW3 602 aa20.92■□□□□ 0.94
CLN3-209ENST00000561689 OR2AG1Q9H205 316 aa20.92■□□□□ 0.94
CLN3-209ENST00000561689 GSTO2Q9H4Y5 243 aa20.92■□□□□ 0.94
CLN3-209ENST00000561689 CD274Q9NZQ7 290 aa20.92■□□□□ 0.94
CLN3-209ENST00000561689 KLHL42Q9P2K6 505 aa20.92■□□□□ 0.94
CLN3-209ENST00000561689 TMEM202A6NGA9 273 aa20.92■□□□□ 0.94
CLN3-209ENST00000561689 LOC730098B7Z3J9 87 aa20.92■□□□□ 0.94
CLN3-209ENST00000561689 CDK14O94921 469 aa20.92■□□□□ 0.94
CLN3-209ENST00000561689 PRKAA1Q13131 559 aa20.92■□□□□ 0.94
CLN3-209ENST00000561689 EOGTQ5NDL2 527 aa20.92■□□□□ 0.94
CLN3-209ENST00000561689 TMEM220Q6QAJ8 160 aa20.92■□□□□ 0.94
CLN3-209ENST00000561689 FRMD7Q6ZUT3 714 aa20.92■□□□□ 0.94
CLN3-209ENST00000561689 FRA10AC1Q70Z53 315 aa20.92■□□□□ 0.94
CLN3-209ENST00000561689 ADAMTSL2Q86TH1 951 aa20.92■□□□□ 0.94
CLN3-209ENST00000561689 FAM124AQ86V42 546 aa20.92■□□□□ 0.94
CLN3-209ENST00000561689 VRK3Q8IV63 474 aa20.92■□□□□ 0.94
CLN3-209ENST00000561689 HEY2Q9UBP5 337 aa20.92■□□□□ 0.94
CLN3-209ENST00000561689 CA14Q9ULX7 337 aa20.92■□□□□ 0.94
CLN3-209ENST00000561689 PLRG1O43660 514 aaKnown RBP20.91■□□□□ 0.94
CLN3-209ENST00000561689 SNX2O60749 519 aa20.91■□□□□ 0.94
CLN3-209ENST00000561689 PAK4O96013 591 aaPredicted RBP20.91■□□□□ 0.94
CLN3-209ENST00000561689 FTH1P02794 183 aa20.91■□□□□ 0.94
CLN3-209ENST00000561689 EEF1DP29692 281 aaKnown RBP20.91■□□□□ 0.94
CLN3-209ENST00000561689 SERPINB5P36952 375 aa20.91■□□□□ 0.94
CLN3-209ENST00000561689 AGTR2P50052 363 aa20.91■□□□□ 0.94
CLN3-209ENST00000561689 RPL14P50914 215 aaKnown RBP20.91■□□□□ 0.94
CLN3-209ENST00000561689 ADPRHP54922 357 aa20.91■□□□□ 0.94
CLN3-209ENST00000561689 CDH13P55290 713 aa20.91■□□□□ 0.94
CLN3-209ENST00000561689 FGL2Q14314 439 aa20.91■□□□□ 0.94
CLN3-209ENST00000561689 MLF2Q15773 248 aaPredicted RBP20.91■□□□□ 0.94
CLN3-209ENST00000561689 VWA5B1Q5TIE3 1220 aa20.91■□□□□ 0.94
CLN3-209ENST00000561689 PNCKQ6P2M8 343 aa20.91■□□□□ 0.94
CLN3-209ENST00000561689 KIAA1324Q6UXG2 1013 aaKnown RBP20.91■□□□□ 0.94
CLN3-209ENST00000561689 Q6ZS52 159 aa20.91■□□□□ 0.94
CLN3-209ENST00000561689 CCDC121Q6ZUS5 278 aa20.91■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms