RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 HTR4Q13639 388 aa16.62■□□□□ 0.25
LDLR-206ENST00000557958 SPNS2Q8IVW8 549 aa16.62■□□□□ 0.25
LDLR-206ENST00000557958 PHTF2Q8N3S3 785 aa16.62■□□□□ 0.25
LDLR-206ENST00000557958 ERLEC1Q96DZ1 483 aa16.62■□□□□ 0.25
LDLR-206ENST00000557958 FAM126AQ9BYI3 521 aaPredicted RBP16.62■□□□□ 0.25
LDLR-206ENST00000557958 DOCK8Q8NF50 2099 aa16.61■□□□□ 0.25
LDLR-206ENST00000557958 EIF3FO00303 357 aaPredicted RBP16.61■□□□□ 0.25
LDLR-206ENST00000557958 CIB2O75838 187 aa16.61■□□□□ 0.25
LDLR-206ENST00000557958 COX4I1P13073 169 aa16.61■□□□□ 0.25
LDLR-206ENST00000557958 HERC3Q15034 1050 aa16.61■□□□□ 0.25
LDLR-206ENST00000557958 TGFBIQ15582 683 aa16.61■□□□□ 0.25
LDLR-206ENST00000557958 ATP13A5Q4VNC0 1218 aa16.61■□□□□ 0.25
LDLR-206ENST00000557958 FNDC3BQ53EP0 1204 aaKnown RBP16.61■□□□□ 0.25
LDLR-206ENST00000557958 RPS27LQ71UM5 84 aaKnown RBP16.61■□□□□ 0.25
LDLR-206ENST00000557958 CLDN19Q8N6F1 224 aa16.61■□□□□ 0.25
LDLR-206ENST00000557958 RP9Q8TA86 221 aaKnown RBP16.61■□□□□ 0.25
LDLR-206ENST00000557958 UCMAQ8WVF2 138 aa16.61■□□□□ 0.25
LDLR-206ENST00000557958 CHFRQ96EP1 664 aa16.61■□□□□ 0.25
LDLR-206ENST00000557958 DCUN1D1Q96GG9 259 aa16.61■□□□□ 0.25
LDLR-206ENST00000557958 GUCD1Q96NT3 240 aa16.61■□□□□ 0.25
LDLR-206ENST00000557958 SPATA16Q9BXB7 569 aa16.61■□□□□ 0.25
LDLR-206ENST00000557958 MTG2Q9H4K7 406 aa16.61■□□□□ 0.25
LDLR-206ENST00000557958 PCDH12Q9NPG4 1184 aa16.61■□□□□ 0.25
LDLR-206ENST00000557958 ZDHHC4Q9NPG8 344 aa16.61■□□□□ 0.25
LDLR-206ENST00000557958 LATS2Q9NRM7 1088 aa16.61■□□□□ 0.25
LDLR-206ENST00000557958 SMOXQ9NWM0 555 aa16.61■□□□□ 0.25
LDLR-206ENST00000557958 KCTD5Q9NXV2 234 aa16.61■□□□□ 0.25
LDLR-206ENST00000557958 NFKBIL1Q9UBC1 381 aaPredicted RBP16.61■□□□□ 0.25
LDLR-206ENST00000557958 IGLV3-16A0A075B6K0 115 aa16.61■□□□□ 0.25
LDLR-206ENST00000557958 EDDM13A0A1B0GTR0 161 aa16.61■□□□□ 0.25
LDLR-206ENST00000557958 NCF1BA6NI72 391 aaPredicted RBP16.61■□□□□ 0.25
LDLR-206ENST00000557958 NCF1CA8MVU1 366 aaPredicted RBP16.61■□□□□ 0.25
LDLR-206ENST00000557958 UBFD1O14562 309 aaKnown RBP16.61■□□□□ 0.25
LDLR-206ENST00000557958 AZIN1O14977 448 aa16.61■□□□□ 0.25
LDLR-206ENST00000557958 GPC4O75487 556 aa16.61■□□□□ 0.25
LDLR-206ENST00000557958 CDK14O94921 469 aa16.61■□□□□ 0.25
LDLR-206ENST00000557958 CHEK2O96017 543 aa16.61■□□□□ 0.25
LDLR-206ENST00000557958 LMNAP02545 664 aaKnown RBP16.61■□□□□ 0.25
LDLR-206ENST00000557958 JUNP05412 331 aaKnown RBP16.61■□□□□ 0.25
LDLR-206ENST00000557958 BMP1P13497 986 aa16.61■□□□□ 0.25
LDLR-206ENST00000557958 NCF1P14598 390 aaPredicted RBP16.61■□□□□ 0.25
LDLR-206ENST00000557958 CCND1P24385 295 aa16.61■□□□□ 0.25
LDLR-206ENST00000557958 CDH13P55290 713 aa16.61■□□□□ 0.25
LDLR-206ENST00000557958 SEMG2Q02383 582 aa16.61■□□□□ 0.25
LDLR-206ENST00000557958 CDC16Q13042 620 aa16.61■□□□□ 0.25
LDLR-206ENST00000557958 DPPA4Q7L190 304 aa16.61■□□□□ 0.25
LDLR-206ENST00000557958 OR56A4Q8NGH8 313 aa16.61■□□□□ 0.25
LDLR-206ENST00000557958 C19orf60Q96EN9 201 aa16.61■□□□□ 0.25
LDLR-206ENST00000557958 RTKNQ9BST9 563 aa16.61■□□□□ 0.25
LDLR-206ENST00000557958 FAM83DQ9H4H8 585 aa16.61■□□□□ 0.25
LDLR-206ENST00000557958 NDE1Q9NXR1 346 aa16.61■□□□□ 0.25
LDLR-206ENST00000557958 IKZF3Q9UKT9 509 aa16.61■□□□□ 0.25
LDLR-206ENST00000557958 SPTBN5Q9NRC6 3674 aaKnown RBP16.6■□□□□ 0.25
LDLR-206ENST00000557958 A8MUI8 341 aa16.6■□□□□ 0.25
LDLR-206ENST00000557958 QSOX1O00391 747 aa16.6■□□□□ 0.25
LDLR-206ENST00000557958 VPS4BO75351 444 aa16.6■□□□□ 0.25
LDLR-206ENST00000557958 TM7SF2O76062 418 aa16.6■□□□□ 0.25
LDLR-206ENST00000557958 ENO3P13929 434 aaPredicted RBP16.6■□□□□ 0.25
LDLR-206ENST00000557958 PIK3R1P27986 724 aa16.6■□□□□ 0.25
LDLR-206ENST00000557958 OPRD1P41143 372 aa16.6■□□□□ 0.25
LDLR-206ENST00000557958 RAP1GDS1P52306 607 aa16.6■□□□□ 0.25
LDLR-206ENST00000557958 SH3BP2P78314 561 aa16.6■□□□□ 0.25
LDLR-206ENST00000557958 MAPRE2Q15555 327 aa16.6■□□□□ 0.25
LDLR-206ENST00000557958 ZNF284Q2VY69 593 aa16.6■□□□□ 0.25
LDLR-206ENST00000557958 GPRC6AQ5T6X5 926 aa16.6■□□□□ 0.25
LDLR-206ENST00000557958 HOMEZQ8IX15 550 aa16.6■□□□□ 0.25
LDLR-206ENST00000557958 RAVER1Q8IY67 606 aaKnown RBP16.6■□□□□ 0.25
LDLR-206ENST00000557958 POU5F2Q8N7G0 328 aa16.6■□□□□ 0.25
LDLR-206ENST00000557958 TRPC4APQ8TEL6 797 aa16.6■□□□□ 0.25
LDLR-206ENST00000557958 ZNF483Q8TF39 744 aaPredicted RBP16.6■□□□□ 0.25
LDLR-206ENST00000557958 OR8D1Q8WZ84 308 aa16.6■□□□□ 0.25
LDLR-206ENST00000557958 CATSPER2Q96P56 530 aa16.6■□□□□ 0.25
LDLR-206ENST00000557958 ZSCAN5AQ9BUG6 496 aa16.6■□□□□ 0.25
LDLR-206ENST00000557958 NUSAP1Q9BXS6 441 aaKnown RBP16.6■□□□□ 0.25
LDLR-206ENST00000557958 ZNF385DQ9H6B1 395 aa16.6■□□□□ 0.25
LDLR-206ENST00000557958 ZBTB26Q9HCK0 441 aa16.6■□□□□ 0.25
LDLR-206ENST00000557958 ANTXRLA6NF34 631 aa16.59■□□□□ 0.25
LDLR-206ENST00000557958 C16orf96A6NNT2 1141 aa16.59■□□□□ 0.25
LDLR-206ENST00000557958 ANHXE9PGG2 379 aa16.59■□□□□ 0.25
LDLR-206ENST00000557958 KPNA5O15131 536 aa16.59■□□□□ 0.25
LDLR-206ENST00000557958 UBDO15205 165 aa16.59■□□□□ 0.25
LDLR-206ENST00000557958 ASGR2P07307 311 aa16.59■□□□□ 0.25
LDLR-206ENST00000557958 TIMP2P16035 220 aa16.59■□□□□ 0.25
LDLR-206ENST00000557958 ITGB6P18564 788 aa16.59■□□□□ 0.25
LDLR-206ENST00000557958 AKT1P31749 480 aa16.59■□□□□ 0.25
LDLR-206ENST00000557958 IRX1P78414 480 aaPredicted RBP16.59■□□□□ 0.25
LDLR-206ENST00000557958 CYLC2Q14093 348 aaPredicted RBP16.59■□□□□ 0.25
LDLR-206ENST00000557958 LRRC73Q5JTD7 316 aa16.59■□□□□ 0.25
LDLR-206ENST00000557958 KANK2Q63ZY3 851 aa16.59■□□□□ 0.25
LDLR-206ENST00000557958 CLEC6AQ6EIG7 209 aa16.59■□□□□ 0.25
LDLR-206ENST00000557958 SCUBE1Q8IWY4 988 aa16.59■□□□□ 0.25
LDLR-206ENST00000557958 TERB1Q8NA31 727 aa16.59■□□□□ 0.25
LDLR-206ENST00000557958 AGAP11Q8TF27 550 aa16.59■□□□□ 0.25
LDLR-206ENST00000557958 PPP1R16AQ96I34 528 aa16.59■□□□□ 0.25
LDLR-206ENST00000557958 KCNK12Q9HB15 430 aa16.59■□□□□ 0.25
LDLR-206ENST00000557958 PCTPQ9UKL6 214 aa16.59■□□□□ 0.25
LDLR-206ENST00000557958 OARD1Q9Y530 152 aa16.59■□□□□ 0.25
LDLR-206ENST00000557958 PRSS21Q9Y6M0 314 aa16.59■□□□□ 0.25
LDLR-206ENST00000557958 PSMD11O00231 422 aa16.59■□□□□ 0.25
LDLR-206ENST00000557958 KPNA3O00505 521 aaPredicted RBP16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms