RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 MAFKO60675 156 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 SOAT2O75908 522 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 MATN4O95460 622 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 S1PR4O95977 384 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 FTH1P02794 183 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 DNTTP04053 509 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 S100BP04271 92 aaPredicted RBP4.8□□□□□ -1.64
LIMA1-214ENST00000552783 CYBBP04839 570 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 LCKP06239 509 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 SMIM10L2AP0DMW4 78 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 SMIM10L2BP0DMW5 78 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 CD1DP15813 335 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 NPR3P17342 541 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 SMPD1P17405 629 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 CXCR2P25025 360 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 GRIK1P39086 918 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 EIF2DP41214 584 aaKnown RBP4.8□□□□□ -1.64
LIMA1-214ENST00000552783 ATP4BP51164 291 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 COPZ1P61923 177 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 PPP2R2BQ00005 443 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 EPS8Q12929 822 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 SIM2Q14190 667 aaPredicted RBP4.8□□□□□ -1.64
LIMA1-214ENST00000552783 CLPPQ16740 277 aaPredicted RBP4.8□□□□□ -1.64
LIMA1-214ENST00000552783 UGP2Q16851 508 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 DESI1Q6ICB0 168 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 BHLHA9Q7RTU4 235 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 TLK2Q86UE8 772 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 MIB1Q86YT6 1006 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 CILP2Q8IUL8 1156 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 FIG4Q92562 907 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 HDAC2Q92769 488 aaKnown RBP4.8□□□□□ -1.64
LIMA1-214ENST00000552783 ZNF486Q96H40 463 aaPredicted RBP4.8□□□□□ -1.64
LIMA1-214ENST00000552783 SENP8Q96LD8 212 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 HSFY1Q96LI6 401 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 SMIM14Q96QK8 99 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 BDH2Q9BUT1 245 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 EMILIN2Q9BXX0 1053 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 DUSP16Q9BY84 665 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 YTHDF1Q9BYJ9 559 aaKnown RBP4.8□□□□□ -1.64
LIMA1-214ENST00000552783 SLC39A8Q9C0K1 460 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 ACTL8Q9H568 366 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 GLOD4Q9HC38 313 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 SLC6A13Q9NSD5 602 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 ABI2Q9NYB9 513 aaPredicted RBP4.8□□□□□ -1.64
LIMA1-214ENST00000552783 MPP6Q9NZW5 540 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 TMEFF2Q9UIK5 374 aaPredicted RBP4.8□□□□□ -1.64
LIMA1-214ENST00000552783 INTS6Q9UL03 887 aaKnown RBP4.8□□□□□ -1.64
LIMA1-214ENST00000552783 PRG3Q9Y2Y8 225 aaPredicted RBP4.8□□□□□ -1.64
LIMA1-214ENST00000552783 IFT52Q9Y366 437 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 UGT2A1Q9Y4X1 527 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 PCDHGA10Q9Y5H3 936 aa4.8□□□□□ -1.64
LIMA1-214ENST00000552783 A0A0G2JLL6 359 aaPredicted RBP4.79□□□□□ -1.64
LIMA1-214ENST00000552783 LOC100130705A0A1B0GUX0 176 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 MYBPHLA2RUH7 354 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 MEIS3P2A8K0S8 358 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 ZNF99A8MXY4 864 aaPredicted RBP4.79□□□□□ -1.64
LIMA1-214ENST00000552783 M0R3G1 203 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 HS6ST1O60243 411 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 DFNA5O60443 496 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 TSPAN3O60637 253 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 FADS2O95864 444 aaKnown RBP4.79□□□□□ -1.64
LIMA1-214ENST00000552783 CHEK2O96017 543 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 CHRNA1P02708 482 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 LBPP18428 481 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 S100A1P23297 94 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 SCNN1GP51170 649 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 AFF1P51825 1210 aaKnown RBP4.79□□□□□ -1.64
LIMA1-214ENST00000552783 CDK5R2Q13319 367 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 CRY1Q16526 586 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 FAM187BQ17R55 369 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 SYT16Q17RD7 645 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 C18orf21Q32NC0 220 aaPredicted RBP4.79□□□□□ -1.64
LIMA1-214ENST00000552783 GTDC1Q4AE62 458 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 SDHAF4Q5VUM1 108 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 NXNL2Q5VZ03 156 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 BEND5Q7L4P6 421 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 PRRT2Q7Z6L0 340 aaPredicted RBP4.79□□□□□ -1.64
LIMA1-214ENST00000552783 B3GNT8Q7Z7M8 397 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 METTL23Q86XA0 190 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 ZDHHC13Q8IUH4 622 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 ARMC8Q8IUR7 673 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 CHPFQ8IZ52 775 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 TMEM199Q8N511 208 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 PPHLN1Q8NEY8 458 aaKnown RBP4.79□□□□□ -1.64
LIMA1-214ENST00000552783 PPTC7Q8NI37 304 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 MCOLN3Q8TDD5 553 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 ATL1Q8WXF7 558 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 NRBF2Q96F24 287 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 NSMCE2Q96MF7 247 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 ZNF583Q96ND8 569 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 KLHL5Q96PQ7 755 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 TINF2Q9BSI4 451 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 TBCDQ9BTW9 1192 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 OSBPL10Q9BXB5 764 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 TRIM54Q9BYV2 358 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 WDR12Q9GZL7 423 aaKnown RBP4.79□□□□□ -1.64
LIMA1-214ENST00000552783 DSN1Q9H410 356 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 FBXO8Q9NRD0 319 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 PLSCR3Q9NRY6 295 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 THG1LQ9NWX6 298 aaKnown RBP4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms