RNA–Protein interactions for RNA: ENST00000552440.5

USP44-208, Transcript of ubiquitin specific peptidase 44, human

TSL 5 BASIC

Gene USP44, Length 1,818 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP44-208	ENST00000552440	NPIPB3	Q92617	1050 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	LRRC39	Q96DD0	335 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	ARHGEF26	Q96DR7	871 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	RNF31	Q96EP0	1072 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	MTG1	Q9BT17	334 aa	Predicted RBP	4.16	□□□□□ -1.74
USP44-208	ENST00000552440	KATNB1	Q9BVA0	655 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	ZNF416	Q9BWM5	594 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	NPL	Q9BXD5	320 aa	Predicted RBP	4.16	□□□□□ -1.74
USP44-208	ENST00000552440	S1PR5	Q9H228	398 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	PNN	Q9H307	717 aa	Known RBP	4.16	□□□□□ -1.74
USP44-208	ENST00000552440	C8orf33	Q9H7E9	229 aa	Predicted RBP	4.16	□□□□□ -1.74
USP44-208	ENST00000552440	TBC1D13	Q9NVG8	400 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	IL17B	Q9UHF5	180 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	A4GNT	Q9UNA3	340 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	CDC14A	Q9UNH5	594 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	MRPS2	Q9Y399	296 aa	Known RBP	4.16	□□□□□ -1.74
USP44-208	ENST00000552440	REXO2	Q9Y3B8	237 aa	Known RBP	4.16	□□□□□ -1.74
USP44-208	ENST00000552440	GMEB1	Q9Y692	573 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	TARSL2	A2RTX5	802 aa	Known RBP	4.16	□□□□□ -1.74
USP44-208	ENST00000552440	VGLL3	A8MV65	326 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440		F8VZ95	297 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440		M0QZQ0	153 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	RAMP2	O60895	175 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	NME6	O75414	186 aa	Predicted RBP	4.16	□□□□□ -1.74
USP44-208	ENST00000552440	SLC25A12	O75746	678 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	RHOBTB1	O94844	696 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	CXCL14	O95715	111 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	CSF2	P04141	144 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	LCAT	P04180	440 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	CYP3A4	P08684	503 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	ATXN1L	P0C7T5	689 aa	Known RBP	4.16	□□□□□ -1.74
USP44-208	ENST00000552440	HK1	P19367	917 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	CHML	P26374	656 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	CDC25C	P30307	473 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	LRPAP1	P30533	357 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	PRKAR1B	P31321	381 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	PBX1	P40424	430 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	SERPINH1	P50454	418 aa	Known RBP	4.16	□□□□□ -1.74
USP44-208	ENST00000552440	ARSF	P54793	590 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	FOXL2	P58012	376 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	LILRA4	P59901	499 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	ACSM1	Q08AH1	577 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	ACSM2A	Q08AH3	577 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	HSPA14	Q0VDF9	509 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	LCP2	Q13094	533 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	BYSL	Q13895	437 aa	Known RBP	4.16	□□□□□ -1.74
USP44-208	ENST00000552440	RRP1B	Q14684	758 aa	Known RBP	4.16	□□□□□ -1.74
USP44-208	ENST00000552440	CSRP2	Q16527	193 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	SLC18A3	Q16572	532 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	RARS2	Q5T160	578 aa	Known RBP	4.16	□□□□□ -1.74
USP44-208	ENST00000552440	GCNT6	Q5T4J0	391 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	RNASEH2B	Q5TBB1	312 aa	Known RBP	4.16	□□□□□ -1.74
USP44-208	ENST00000552440	STRIP1	Q5VSL9	837 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	ACSM2B	Q68CK6	577 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	WBP2NL	Q6ICG8	309 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	AAGAB	Q6PD74	315 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	CORO6	Q6QEF8	472 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	CLEC9A	Q6UXN8	241 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	LRRC70	Q7Z2Q7	622 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	LUZP1	Q86V48	1076 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	RASAL3	Q86YV0	1011 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	SIAH3	Q8IW03	269 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	DDX51	Q8N8A6	666 aa	Known RBP eCLIP	4.16	□□□□□ -1.74
USP44-208	ENST00000552440	BHLHE23	Q8NDY6	225 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	NCOA7	Q8NI08	942 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	SELENOM	Q8WWX9	145 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	KCNJ9	Q92806	393 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	TMIGD2	Q96BF3	282 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	SNRNP40	Q96DI7	357 aa	Known RBP	4.16	□□□□□ -1.74
USP44-208	ENST00000552440	ZBTB45	Q96K62	511 aa	Predicted RBP	4.16	□□□□□ -1.74
USP44-208	ENST00000552440	COQ10A	Q96MF6	247 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	CATSPER2	Q96P56	530 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	KLHL5	Q96PQ7	755 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	CRAMP1	Q96RY5	1269 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	NPAS1	Q99742	590 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	ABHD6	Q9BV23	337 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	MMP27	Q9H306	513 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	VCX2	Q9H322	139 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	FZD8	Q9H461	694 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	EXO5	Q9H790	373 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	NOL11	Q9H8H0	719 aa	Known RBP	4.16	□□□□□ -1.74
USP44-208	ENST00000552440	RANGRF	Q9HD47	186 aa	Predicted RBP	4.16	□□□□□ -1.74
USP44-208	ENST00000552440	FARSB	Q9NSD9	589 aa	Known RBP	4.16	□□□□□ -1.74
USP44-208	ENST00000552440	PANK4	Q9NVE7	773 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	STK39	Q9UEW8	545 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	CNOT8	Q9UFF9	292 aa	Known RBP	4.16	□□□□□ -1.74
USP44-208	ENST00000552440	TSPAN16	Q9UKR8	245 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	BARX2	Q9UMQ3	279 aa	Predicted RBP	4.16	□□□□□ -1.74
USP44-208	ENST00000552440	SNX7	Q9UNH6	387 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	ZNF148	Q9UQR1	794 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	KCNK6	Q9Y257	313 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	CARD8	Q9Y2G2	431 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	SLC27A6	Q9Y2P4	619 aa		4.16	□□□□□ -1.74
USP44-208	ENST00000552440	MRC2	Q9UBG0	1479 aa		4.15	□□□□□ -1.74
USP44-208	ENST00000552440	WDR62	O43379	1518 aa		4.15	□□□□□ -1.74
USP44-208	ENST00000552440	HMGXB3	Q12766	1538 aa		4.15	□□□□□ -1.74
USP44-208	ENST00000552440	PLEKHG2	Q9H7P9	1386 aa		4.15	□□□□□ -1.74
USP44-208	ENST00000552440	MSANTD3-TMEFF1	A0A0A6YYJ0	341 aa		4.15	□□□□□ -1.75
USP44-208	ENST00000552440	C13orf42	A0A1B0GVH6	325 aa		4.15	□□□□□ -1.75
USP44-208	ENST00000552440	NPIPB5	A8MRT5	1133 aa		4.15	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms