RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 CLCN4P51793 760 aa13.56□□□□□ -0.24
VPS33A-208ENST00000543633 ECT2LQ008S8 904 aa13.56□□□□□ -0.24
VPS33A-208ENST00000543633 GSTM4Q03013 218 aa13.56□□□□□ -0.24
VPS33A-208ENST00000543633 RELAQ04206 551 aa13.56□□□□□ -0.24
VPS33A-208ENST00000543633 RING1Q06587 406 aa13.56□□□□□ -0.24
VPS33A-208ENST00000543633 NFE2Q16621 373 aaPredicted RBP13.56□□□□□ -0.24
VPS33A-208ENST00000543633 PYCR3Q53H96 274 aa13.56□□□□□ -0.24
VPS33A-208ENST00000543633 GRAMD4Q6IC98 578 aa13.56□□□□□ -0.24
VPS33A-208ENST00000543633 FBXL22Q6P050 247 aa13.56□□□□□ -0.24
VPS33A-208ENST00000543633 CENPSQ8N2Z9 138 aa13.56□□□□□ -0.24
VPS33A-208ENST00000543633 CARNMT1Q8N4J0 409 aa13.56□□□□□ -0.24
VPS33A-208ENST00000543633 FNDC5Q8NAU1 212 aa13.56□□□□□ -0.24
VPS33A-208ENST00000543633 GLT1D1Q96MS3 346 aa13.56□□□□□ -0.24
VPS33A-208ENST00000543633 GPR21Q99679 349 aa13.56□□□□□ -0.24
VPS33A-208ENST00000543633 MTG1Q9BT17 334 aaPredicted RBP13.56□□□□□ -0.24
VPS33A-208ENST00000543633 BEGAINQ9BUH8 593 aa13.56□□□□□ -0.24
VPS33A-208ENST00000543633 RAD21L1Q9H4I0 556 aa13.56□□□□□ -0.24
VPS33A-208ENST00000543633 SMPD4Q9NXE4 827 aa13.56□□□□□ -0.24
VPS33A-208ENST00000543633 FLRT1Q9NZU1 646 aa13.56□□□□□ -0.24
VPS33A-208ENST00000543633 TRMT6Q9UJA5 497 aaKnown RBP13.56□□□□□ -0.24
VPS33A-208ENST00000543633 PAIP2BQ9ULR5 123 aaKnown RBP13.56□□□□□ -0.24
VPS33A-208ENST00000543633 ERGIC3Q9Y282 383 aa13.56□□□□□ -0.24
VPS33A-208ENST00000543633 TDRKHQ9Y2W6 561 aaKnown RBP13.56□□□□□ -0.24
VPS33A-208ENST00000543633 FAM92AA1XBS5 289 aa13.56□□□□□ -0.24
VPS33A-208ENST00000543633 FUOMA2VDF0 154 aa13.56□□□□□ -0.24
VPS33A-208ENST00000543633 CFAP99D6REC4 459 aa13.56□□□□□ -0.24
VPS33A-208ENST00000543633 CDC7O00311 574 aa13.56□□□□□ -0.24
VPS33A-208ENST00000543633 BTN3A1O00481 513 aa13.56□□□□□ -0.24
VPS33A-208ENST00000543633 TBC1D4O60343 1298 aa13.56□□□□□ -0.24
VPS33A-208ENST00000543633 ATP6V1G1O75348 118 aa13.56□□□□□ -0.24
VPS33A-208ENST00000543633 TSPAN12O95859 305 aa13.56□□□□□ -0.24
VPS33A-208ENST00000543633 PKMP14618 531 aaKnown RBP13.56□□□□□ -0.24
VPS33A-208ENST00000543633 EEF1B2P24534 225 aaKnown RBP13.56□□□□□ -0.24
VPS33A-208ENST00000543633 POLR2IP36954 125 aaKnown RBP13.56□□□□□ -0.24
VPS33A-208ENST00000543633 TTPAP49638 278 aa13.56□□□□□ -0.24
VPS33A-208ENST00000543633 BEX3Q00994 111 aa13.56□□□□□ -0.24
VPS33A-208ENST00000543633 TRAF2Q12933 501 aa13.56□□□□□ -0.24
VPS33A-208ENST00000543633 IL18R1Q13478 541 aa13.56□□□□□ -0.24
VPS33A-208ENST00000543633 GALNT3Q14435 633 aa13.56□□□□□ -0.24
VPS33A-208ENST00000543633 DSC3Q14574 896 aa13.56□□□□□ -0.24
VPS33A-208ENST00000543633 PLCL1Q15111 1095 aa13.56□□□□□ -0.24
VPS33A-208ENST00000543633 XKR5Q6UX68 686 aa13.56□□□□□ -0.24
VPS33A-208ENST00000543633 GPSM1Q86YR5 675 aa13.56□□□□□ -0.24
VPS33A-208ENST00000543633 ZDHHC13Q8IUH4 622 aa13.56□□□□□ -0.24
VPS33A-208ENST00000543633 CLEC4FQ8N1N0 589 aa13.56□□□□□ -0.24
VPS33A-208ENST00000543633 MINDY2Q8NBR6 621 aa13.56□□□□□ -0.24
VPS33A-208ENST00000543633 ZNF555Q8NEP9 628 aa13.56□□□□□ -0.24
VPS33A-208ENST00000543633 GIPC2Q8TF65 315 aa13.56□□□□□ -0.24
VPS33A-208ENST00000543633 IGSF8Q969P0 613 aa13.56□□□□□ -0.24
VPS33A-208ENST00000543633 TRIM8Q9BZR9 551 aa13.56□□□□□ -0.24
VPS33A-208ENST00000543633 GIN1Q9NXP7 522 aa13.56□□□□□ -0.24
VPS33A-208ENST00000543633 NUDT5Q9UKK9 219 aa13.56□□□□□ -0.24
VPS33A-208ENST00000543633 IKZF3Q9UKT9 509 aa13.56□□□□□ -0.24
VPS33A-208ENST00000543633 TNPO3Q9Y5L0 923 aaKnown RBP13.56□□□□□ -0.24
VPS33A-208ENST00000543633 A0A0U1RQF3 1178 aa13.55□□□□□ -0.24
VPS33A-208ENST00000543633 TMX2-CTNND1H3BSU7 103 aa13.55□□□□□ -0.24
VPS33A-208ENST00000543633 POMCP01189 267 aa13.55□□□□□ -0.24
VPS33A-208ENST00000543633 ZNF182P17025 639 aaPredicted RBP13.55□□□□□ -0.24
VPS33A-208ENST00000543633 ITIH1P19827 911 aa13.55□□□□□ -0.24
VPS33A-208ENST00000543633 MSH3P20585 1137 aa13.55□□□□□ -0.24
VPS33A-208ENST00000543633 PRDX3P30048 256 aaKnown RBP13.55□□□□□ -0.24
VPS33A-208ENST00000543633 FMO4P31512 558 aa13.55□□□□□ -0.24
VPS33A-208ENST00000543633 IL2P60568 153 aa13.55□□□□□ -0.24
VPS33A-208ENST00000543633 PCBP2Q15366 365 aaKnown RBP eCLIP13.55□□□□□ -0.24
VPS33A-208ENST00000543633 RGS21Q2M5E4 152 aa13.55□□□□□ -0.24
VPS33A-208ENST00000543633 RFX4Q33E94 735 aa13.55□□□□□ -0.24
VPS33A-208ENST00000543633 PAN2Q504Q3 1202 aaKnown RBP13.55□□□□□ -0.24
VPS33A-208ENST00000543633 TMEM214Q6NUQ4 689 aaKnown RBP13.55□□□□□ -0.24
VPS33A-208ENST00000543633 SLC2A7Q6PXP3 512 aa13.55□□□□□ -0.24
VPS33A-208ENST00000543633 ZC3H7AQ8IWR0 971 aaKnown RBP13.55□□□□□ -0.24
VPS33A-208ENST00000543633 SCN4BQ8IWT1 228 aa13.55□□□□□ -0.24
VPS33A-208ENST00000543633 KCNJ9Q92806 393 aa13.55□□□□□ -0.24
VPS33A-208ENST00000543633 MUL1Q969V5 352 aa13.55□□□□□ -0.24
VPS33A-208ENST00000543633 RBM4BQ9BQ04 359 aaKnown RBP13.55□□□□□ -0.24
VPS33A-208ENST00000543633 RBM4Q9BWF3 364 aaKnown RBP13.55□□□□□ -0.24
VPS33A-208ENST00000543633 OSBPL10Q9BXB5 764 aa13.55□□□□□ -0.24
VPS33A-208ENST00000543633 MAGIXQ9H6Y5 334 aa13.55□□□□□ -0.24
VPS33A-208ENST00000543633 ANKRD28O15084 1053 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 MUSKO15146 869 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 KCNH1O95259 989 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 CHRNA1P02708 482 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 IL1RNP18510 177 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 ELK4P28324 431 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 YAP1P46937 504 aaKnown RBP13.54□□□□□ -0.24
VPS33A-208ENST00000543633 NOGQ13253 232 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 NR1D2Q14995 579 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 C5orf22Q49AR2 442 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 SLC39A12Q504Y0 691 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 C6orf141Q5SZD1 244 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 OTUD3Q5T2D3 398 aaPredicted RBP13.54□□□□□ -0.24
VPS33A-208ENST00000543633 RAP1GAP2Q684P5 730 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 UGT3A1Q6NUS8 523 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 Q6ZSR9 355 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 ITIH5Q86UX2 942 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 STK32CQ86UX6 486 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 SERINC5Q86VE9 423 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 SPARTQ8N0X7 666 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 DNAJB8Q8NHS0 232 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 SLC22A17Q8WUG5 538 aa13.54□□□□□ -0.24
VPS33A-208ENST00000543633 ZNF566Q969W8 418 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms