RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 CAPRIN1Q14444 709 aaKnown RBP16.09■□□□□ 0.17
COL4A1-204ENST00000543140 TPRG1Q6ZUI0 275 aa16.09■□□□□ 0.17
COL4A1-204ENST00000543140 GOLGA7Q7Z5G4 137 aa16.09■□□□□ 0.17
COL4A1-204ENST00000543140 NECAB2Q7Z6G3 386 aa16.09■□□□□ 0.17
COL4A1-204ENST00000543140 ZBTB2Q8N680 514 aa16.09■□□□□ 0.17
COL4A1-204ENST00000543140 PCYOX1LQ8NBM8 494 aa16.09■□□□□ 0.17
COL4A1-204ENST00000543140 TRIM8Q9BZR9 551 aa16.09■□□□□ 0.17
COL4A1-204ENST00000543140 VCX3BQ9H321 246 aa16.09■□□□□ 0.17
COL4A1-204ENST00000543140 ELOVL2Q9NXB9 296 aa16.09■□□□□ 0.17
COL4A1-204ENST00000543140 CD84Q9UIB8 345 aa16.09■□□□□ 0.17
COL4A1-204ENST00000543140 SLC25A13Q9UJS0 675 aa16.09■□□□□ 0.17
COL4A1-204ENST00000543140 GPR45Q9Y5Y3 372 aa16.09■□□□□ 0.17
COL4A1-204ENST00000543140 GRM6O15303 877 aa16.09■□□□□ 0.17
COL4A1-204ENST00000543140 CAPN1P07384 714 aa16.09■□□□□ 0.17
COL4A1-204ENST00000543140 RHOP08100 348 aa16.09■□□□□ 0.17
COL4A1-204ENST00000543140 TYRP14679 529 aa16.09■□□□□ 0.17
COL4A1-204ENST00000543140 MRPS35P82673 323 aaKnown RBP16.09■□□□□ 0.17
COL4A1-204ENST00000543140 CREB5Q02930 508 aa16.09■□□□□ 0.17
COL4A1-204ENST00000543140 GTF2H2Q13888 395 aa16.09■□□□□ 0.17
COL4A1-204ENST00000543140 ATP13A5Q4VNC0 1218 aa16.09■□□□□ 0.17
COL4A1-204ENST00000543140 HABP4Q5JVS0 413 aaKnown RBP16.09■□□□□ 0.17
COL4A1-204ENST00000543140 GTF2H2CQ6P1K8 395 aa16.09■□□□□ 0.17
COL4A1-204ENST00000543140 USP45Q70EL2 814 aa16.09■□□□□ 0.17
COL4A1-204ENST00000543140 LILRA2Q8N149 483 aa16.09■□□□□ 0.17
COL4A1-204ENST00000543140 METTL6Q8TCB7 284 aa16.09■□□□□ 0.17
COL4A1-204ENST00000543140 SORCS1Q8WY21 1168 aa16.09■□□□□ 0.17
COL4A1-204ENST00000543140 DLG3Q92796 817 aa16.09■□□□□ 0.17
COL4A1-204ENST00000543140 VPS33AQ96AX1 596 aa16.09■□□□□ 0.17
COL4A1-204ENST00000543140 LRGUKQ96M69 825 aa16.09■□□□□ 0.17
COL4A1-204ENST00000543140 ZNF382Q96SR6 550 aa16.09■□□□□ 0.17
COL4A1-204ENST00000543140 EGFL8Q99944 293 aa16.09■□□□□ 0.17
COL4A1-204ENST00000543140 NUSAP1Q9BXS6 441 aaKnown RBP16.09■□□□□ 0.17
COL4A1-204ENST00000543140 C6orf203Q9P0P8 240 aaPredicted RBP16.09■□□□□ 0.17
COL4A1-204ENST00000543140 DLGAP2Q9P1A6 1054 aa16.09■□□□□ 0.17
COL4A1-204ENST00000543140 EPS15L1Q9UBC2 864 aa16.09■□□□□ 0.17
COL4A1-204ENST00000543140 SUCOQ9UBS9 1254 aaKnown RBP16.09■□□□□ 0.17
COL4A1-204ENST00000543140 ZMYM5Q9UJ78 669 aa16.09■□□□□ 0.17
COL4A1-204ENST00000543140 NOTCH4Q99466 2003 aa16.09■□□□□ 0.17
COL4A1-204ENST00000543140 CASQ2O14958 399 aaPredicted RBP16.08■□□□□ 0.17
COL4A1-204ENST00000543140 RAD51BO15315 384 aa16.08■□□□□ 0.17
COL4A1-204ENST00000543140 VPS4BO75351 444 aa16.08■□□□□ 0.17
COL4A1-204ENST00000543140 PABPC1P11940 636 aaKnown RBP16.08■□□□□ 0.17
COL4A1-204ENST00000543140 DGKAP23743 735 aa16.08■□□□□ 0.17
COL4A1-204ENST00000543140 HTR6P50406 440 aa16.08■□□□□ 0.17
COL4A1-204ENST00000543140 CBX2Q14781 532 aaPredicted RBP16.08■□□□□ 0.17
COL4A1-204ENST00000543140 CARD16Q5EG05 197 aa16.08■□□□□ 0.17
COL4A1-204ENST00000543140 XKR7Q5GH72 579 aa16.08■□□□□ 0.17
COL4A1-204ENST00000543140 GPRC6AQ5T6X5 926 aa16.08■□□□□ 0.17
COL4A1-204ENST00000543140 POF1BQ8WVV4 589 aa16.08■□□□□ 0.17
COL4A1-204ENST00000543140 IRF7Q92985 503 aa16.08■□□□□ 0.17
COL4A1-204ENST00000543140 ZSWIM3Q96MP5 696 aa16.08■□□□□ 0.17
COL4A1-204ENST00000543140 FAM126AQ9BYI3 521 aaPredicted RBP16.08■□□□□ 0.17
COL4A1-204ENST00000543140 LATS2Q9NRM7 1088 aa16.08■□□□□ 0.17
COL4A1-204ENST00000543140 TMEM181Q9P2C4 612 aa16.08■□□□□ 0.17
COL4A1-204ENST00000543140 TMCO1Q9UM00 188 aa16.08■□□□□ 0.17
COL4A1-204ENST00000543140 NDUFAF1Q9Y375 327 aa16.08■□□□□ 0.17
COL4A1-204ENST00000543140 C5orf42Q9H799 3197 aa16.08■□□□□ 0.17
COL4A1-204ENST00000543140 DPPA5A6NC42 116 aa16.08■□□□□ 0.16
COL4A1-204ENST00000543140 OR7A17O14581 309 aa16.08■□□□□ 0.16
COL4A1-204ENST00000543140 LIN7AO14910 233 aaPredicted RBP16.08■□□□□ 0.16
COL4A1-204ENST00000543140 PRR35P0CG20 571 aa16.08■□□□□ 0.16
COL4A1-204ENST00000543140 PSMD8P48556 350 aa16.08■□□□□ 0.16
COL4A1-204ENST00000543140 UFM1P61960 85 aa16.08■□□□□ 0.16
COL4A1-204ENST00000543140 GSTA3Q16772 222 aa16.08■□□□□ 0.16
COL4A1-204ENST00000543140 GPR33Q49SQ1 333 aa16.08■□□□□ 0.16
COL4A1-204ENST00000543140 LY6G5CQ5SRR4 150 aa16.08■□□□□ 0.16
COL4A1-204ENST00000543140 IL23RQ5VWK5 629 aa16.08■□□□□ 0.16
COL4A1-204ENST00000543140 C8orf82Q6P1X6 216 aaPredicted RBP16.08■□□□□ 0.16
COL4A1-204ENST00000543140 ZFP1Q6P2D0 407 aa16.08■□□□□ 0.16
COL4A1-204ENST00000543140 MBOAT1Q6ZNC8 495 aa16.08■□□□□ 0.16
COL4A1-204ENST00000543140 OR4F6Q8NGB9 312 aa16.08■□□□□ 0.16
COL4A1-204ENST00000543140 BADQ92934 168 aa16.08■□□□□ 0.16
COL4A1-204ENST00000543140 ECHDC3Q96DC8 303 aa16.08■□□□□ 0.16
COL4A1-204ENST00000543140 PKP2Q99959 881 aa16.08■□□□□ 0.16
COL4A1-204ENST00000543140 HTATIP2Q9BUP3 242 aa16.08■□□□□ 0.16
COL4A1-204ENST00000543140 BRD9Q9H8M2 597 aa16.08■□□□□ 0.16
COL4A1-204ENST00000543140 IPPKQ9H8X2 491 aa16.08■□□□□ 0.16
COL4A1-204ENST00000543140 CD300AQ9UGN4 299 aa16.08■□□□□ 0.16
COL4A1-204ENST00000543140 WNT6Q9Y6F9 365 aa16.08■□□□□ 0.16
COL4A1-204ENST00000543140 PLXNB3Q9ULL4 1909 aa16.08■□□□□ 0.16
COL4A1-204ENST00000543140 TAPBPO15533 448 aa16.07■□□□□ 0.16
COL4A1-204ENST00000543140 POP4O95707 220 aaKnown RBP16.07■□□□□ 0.16
COL4A1-204ENST00000543140 PTPN2P17706 415 aa16.07■□□□□ 0.16
COL4A1-204ENST00000543140 PCBP2Q15366 365 aaKnown RBP eCLIP16.07■□□□□ 0.16
COL4A1-204ENST00000543140 MAP7D1Q3KQU3 841 aa16.07■□□□□ 0.16
COL4A1-204ENST00000543140 SAMD4BQ5PRF9 694 aaKnown RBP16.07■□□□□ 0.16
COL4A1-204ENST00000543140 OGFRL1Q5TC84 451 aaPredicted RBP16.07■□□□□ 0.16
COL4A1-204ENST00000543140 OGFOD2Q6N063 350 aa16.07■□□□□ 0.16
COL4A1-204ENST00000543140 BLOC1S3Q6QNY0 202 aa16.07■□□□□ 0.16
COL4A1-204ENST00000543140 IL27RAQ6UWB1 636 aa16.07■□□□□ 0.16
COL4A1-204ENST00000543140 MACC1Q6ZN28 852 aa16.07■□□□□ 0.16
COL4A1-204ENST00000543140 DET1Q7L5Y6 550 aa16.07■□□□□ 0.16
COL4A1-204ENST00000543140 CBARPQ8N350 705 aaPredicted RBP16.07■□□□□ 0.16
COL4A1-204ENST00000543140 FNDC5Q8NAU1 212 aa16.07■□□□□ 0.16
COL4A1-204ENST00000543140 CYB5D2Q8WUJ1 264 aa16.07■□□□□ 0.16
COL4A1-204ENST00000543140 ING5Q8WYH8 240 aa16.07■□□□□ 0.16
COL4A1-204ENST00000543140 GATA6Q92908 595 aa16.07■□□□□ 0.16
COL4A1-204ENST00000543140 PPP2R3CQ969Q6 453 aa16.07■□□□□ 0.16
COL4A1-204ENST00000543140 PBXIP1Q96AQ6 731 aa16.07■□□□□ 0.16
COL4A1-204ENST00000543140 ISG20Q96AZ6 181 aaKnown RBP16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms