RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 NFKBIAP25963 317 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 VEGFBP49765 207 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 HNRNPFP52597 415 aaKnown RBP9.74□□□□□ -0.85
SS18-205ENST00000542420 CHN2P52757 468 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 HK3P52790 923 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 EPHA5P54756 1037 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 AQP4P55087 323 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 KCNK10P57789 538 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 ZNF33BQ06732 778 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 INPP5AQ14642 412 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 ADRM1Q16186 407 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 GRAMD1BQ3KR37 738 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 AASDHQ4L235 1098 aaPredicted RBP9.74□□□□□ -0.85
SS18-205ENST00000542420 C6orf10Q5SRN2 563 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 LPCAT4Q643R3 524 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 PTRHD1Q6GMV3 140 aaKnown RBP9.74□□□□□ -0.85
SS18-205ENST00000542420 TPRG1Q6ZUI0 275 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 FRA10AC1Q70Z53 315 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 TAS2R42Q7RTR8 314 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 LYSMD3Q7Z3D4 306 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 SPATA24Q86W54 205 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 SERPINA9Q86WD7 417 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 DHFR2Q86XF0 187 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 DDIASQ8IXT1 998 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 FAM9CQ8IZT9 166 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 AHI1Q8N157 1196 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 AADATQ8N5Z0 425 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 ARL14EPQ8N8R7 260 aaPredicted RBP9.74□□□□□ -0.85
SS18-205ENST00000542420 ANKFN1Q8N957 763 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 DNAJB8Q8NHS0 232 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 EXT2Q93063 718 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 SLC45A3Q96JT2 553 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 PPP3R2Q96LZ3 170 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 EMILIN2Q9BXX0 1053 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 SLC29A3Q9BZD2 475 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 RNF208Q9H0X6 261 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 TMEM39AQ9NV64 488 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 TRPS1Q9UHF7 1281 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 IKZF3Q9UKT9 509 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 LZTS1Q9Y250 596 aa9.74□□□□□ -0.85
SS18-205ENST00000542420 FCF1Q9Y324 198 aaKnown RBP9.74□□□□□ -0.85
SS18-205ENST00000542420 GLYATL1P3A0A0U1RQE8 302 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 PRORSD1PA6NEY8 169 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 WASH3PC4AMC7 463 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 NPIPB8E9PQR5 432 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 SLC16A5O15375 505 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 TEX28O15482 410 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 HNRNPRO43390 633 aaKnown RBP9.73□□□□□ -0.85
SS18-205ENST00000542420 PRAMEF1O95521 474 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 POU2F2P09086 479 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 PRSS56P0CW18 603 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 CD1EP15812 388 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 GABRR2P28476 465 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 NSG1P42857 185 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 WDR5P61964 334 aaKnown RBP9.73□□□□□ -0.85
SS18-205ENST00000542420 LMAN2Q12907 356 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 RBBP7Q16576 425 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 SBSNQ6UWP8 590 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 LINGO4Q6UY18 593 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 TPGS1Q6ZTW0 290 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 USP45Q70EL2 814 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 CPNE9Q8IYJ1 553 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 DDI1Q8WTU0 396 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 KLHL32Q96NJ5 620 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 NSUN5Q96P11 429 aaKnown RBP9.73□□□□□ -0.85
SS18-205ENST00000542420 SLC30A3Q99726 388 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 CENPKQ9BS16 269 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 NTMT1Q9BV86 223 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 CCM2LQ9NUG4 571 aaPredicted RBP9.73□□□□□ -0.85
SS18-205ENST00000542420 MAP10Q9P2G4 905 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 GMEB1Q9Y692 573 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 IGLV3-16A0A075B6K0 115 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 SERTM1A2A2V5 107 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 SLC28A1O00337 649 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 KIAA0355O15063 1070 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 GRM6O15303 877 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 FFAR2O15552 330 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 SLC22A3O75751 556 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 TIMP1P01033 207 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 ADH1AP07327 375 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 MPC1LP0DKB6 136 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 BMP2P12643 396 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 ACPPP15309 386 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 CDKN1CP49918 316 aaPredicted RBP9.73□□□□□ -0.85
SS18-205ENST00000542420 FOXA1P55317 472 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 FOLH1Q04609 750 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 MAP7Q14244 749 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 PDK3Q15120 406 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 ATP6AP1LQ52LC2 224 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 MTX3Q5HYI7 312 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 GPRC6AQ5T6X5 926 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 IL23RQ5VWK5 629 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 UGT2A3Q6UWM9 527 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 NEK10Q6ZWH5 1172 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 RPS27LQ71UM5 84 aaKnown RBP9.73□□□□□ -0.85
SS18-205ENST00000542420 NXPE1Q8N323 547 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 TMEM199Q8N511 208 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 GLB1L3Q8NCI6 653 aaPredicted RBP9.73□□□□□ -0.85
SS18-205ENST00000542420 HCAR2Q8TDS4 363 aa9.73□□□□□ -0.85
SS18-205ENST00000542420 LRRC58Q96CX6 371 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms