RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 PCDHB3Q9Y5E6 796 aa15.15■□□□□ 0.02
CLSTN3-213ENST00000541953 VEGFDO43915 354 aa15.14■□□□□ 0.01
CLSTN3-213ENST00000541953 NDST3O95803 873 aa15.14■□□□□ 0.01
CLSTN3-213ENST00000541953 PECAM1P16284 738 aaPredicted RBP15.14■□□□□ 0.01
CLSTN3-213ENST00000541953 IDSP22304 550 aa15.14■□□□□ 0.01
CLSTN3-213ENST00000541953 GNLYP22749 145 aa15.14■□□□□ 0.01
CLSTN3-213ENST00000541953 SEMA5AQ13591 1074 aa15.14■□□□□ 0.01
CLSTN3-213ENST00000541953 NFE2L1Q14494 772 aa15.14■□□□□ 0.01
CLSTN3-213ENST00000541953 CHRNA6Q15825 494 aa15.14■□□□□ 0.01
CLSTN3-213ENST00000541953 RPE65Q16518 533 aa15.14■□□□□ 0.01
CLSTN3-213ENST00000541953 NADK2Q4G0N4 442 aa15.14■□□□□ 0.01
CLSTN3-213ENST00000541953 PRR30Q53SZ7 412 aaPredicted RBP15.14■□□□□ 0.01
CLSTN3-213ENST00000541953 LCN10Q6JVE6 187 aa15.14■□□□□ 0.01
CLSTN3-213ENST00000541953 KDELC1Q6UW63 502 aa15.14■□□□□ 0.01
CLSTN3-213ENST00000541953 BEND7Q8N7W2 519 aaPredicted RBP15.14■□□□□ 0.01
CLSTN3-213ENST00000541953 SLC38A9Q8NBW4 561 aa15.14■□□□□ 0.01
CLSTN3-213ENST00000541953 ZNF830Q96NB3 372 aaPredicted RBP15.14■□□□□ 0.01
CLSTN3-213ENST00000541953 IL26Q9NPH9 171 aa15.14■□□□□ 0.01
CLSTN3-213ENST00000541953 HAUS2Q9NVX0 235 aa15.14■□□□□ 0.01
CLSTN3-213ENST00000541953 PADI1Q9ULC6 663 aa15.14■□□□□ 0.01
CLSTN3-213ENST00000541953 SPTBP11277 2137 aa15.14■□□□□ 0.01
CLSTN3-213ENST00000541953 CRYBG3Q68DQ2 2970 aa15.13■□□□□ 0.01
CLSTN3-213ENST00000541953 OR2AG2A6NM03 316 aa15.13■□□□□ 0.01
CLSTN3-213ENST00000541953 GOLGA6L22H0YM25 854 aa15.13■□□□□ 0.01
CLSTN3-213ENST00000541953 APOL1O14791 398 aa15.13■□□□□ 0.01
CLSTN3-213ENST00000541953 KRT1P04264 644 aa15.13■□□□□ 0.01
CLSTN3-213ENST00000541953 H2AFZP0C0S5 128 aa15.13■□□□□ 0.01
CLSTN3-213ENST00000541953 NFKB1P19838 968 aa15.13■□□□□ 0.01
CLSTN3-213ENST00000541953 FECHP22830 423 aa15.13■□□□□ 0.01
CLSTN3-213ENST00000541953 PBLDP30039 288 aaPredicted RBP15.13■□□□□ 0.01
CLSTN3-213ENST00000541953 ARCN1P48444 511 aaKnown RBP15.13■□□□□ 0.01
CLSTN3-213ENST00000541953 UBASH3AP57075 661 aa15.13■□□□□ 0.01
CLSTN3-213ENST00000541953 ADCY2Q08462 1091 aa15.13■□□□□ 0.01
CLSTN3-213ENST00000541953 WASHC5Q12768 1159 aa15.13■□□□□ 0.01
CLSTN3-213ENST00000541953 GPS2Q13227 327 aa15.13■□□□□ 0.01
CLSTN3-213ENST00000541953 GPR19Q15760 415 aa15.13■□□□□ 0.01
CLSTN3-213ENST00000541953 SIRPB2Q5JXA9 342 aa15.13■□□□□ 0.01
CLSTN3-213ENST00000541953 CAPRIN2Q6IMN6 1127 aaKnown RBP15.13■□□□□ 0.01
CLSTN3-213ENST00000541953 MFSD7Q6UXD7 560 aa15.13■□□□□ 0.01
CLSTN3-213ENST00000541953 FAM151BQ6UXP7 276 aa15.13■□□□□ 0.01
CLSTN3-213ENST00000541953 H2AFVQ71UI9 128 aa15.13■□□□□ 0.01
CLSTN3-213ENST00000541953 SIDT2Q8NBJ9 832 aaKnown RBP15.13■□□□□ 0.01
CLSTN3-213ENST00000541953 GDAP1Q8TB36 358 aa15.13■□□□□ 0.01
CLSTN3-213ENST00000541953 CTNNBL1Q8WYA6 563 aaPredicted RBP15.13■□□□□ 0.01
CLSTN3-213ENST00000541953 RNF25Q96BH1 459 aaPredicted RBP15.13■□□□□ 0.01
CLSTN3-213ENST00000541953 ZDHHC12Q96GR4 267 aa15.13■□□□□ 0.01
CLSTN3-213ENST00000541953 OXNAD1Q96HP4 312 aaPredicted RBP15.13■□□□□ 0.01
CLSTN3-213ENST00000541953 RAB33BQ9H082 229 aa15.13■□□□□ 0.01
CLSTN3-213ENST00000541953 IFNKQ9P0W0 207 aa15.13■□□□□ 0.01
CLSTN3-213ENST00000541953 KCND3Q9UK17 655 aa15.13■□□□□ 0.01
CLSTN3-213ENST00000541953 LUC7L2Q9Y383 392 aaKnown RBP15.13■□□□□ 0.01
CLSTN3-213ENST00000541953 NOTCH2Q04721 2471 aa15.12■□□□□ 0.01
CLSTN3-213ENST00000541953 SYCE3A1L190 88 aa15.12■□□□□ 0.01
CLSTN3-213ENST00000541953 POP7O75817 140 aaKnown RBP15.12■□□□□ 0.01
CLSTN3-213ENST00000541953 CCNYL3P0C7X3 344 aa15.12■□□□□ 0.01
CLSTN3-213ENST00000541953 DMPKQ09013 629 aa15.12■□□□□ 0.01
CLSTN3-213ENST00000541953 PRKD1Q15139 912 aaPredicted RBP15.12■□□□□ 0.01
CLSTN3-213ENST00000541953 SLC14A2Q15849 920 aa15.12■□□□□ 0.01
CLSTN3-213ENST00000541953 SLC18A3Q16572 532 aa15.12■□□□□ 0.01
CLSTN3-213ENST00000541953 TEX44Q53QW1 395 aa15.12■□□□□ 0.01
CLSTN3-213ENST00000541953 RFX6Q8HWS3 928 aa15.12■□□□□ 0.01
CLSTN3-213ENST00000541953 APLFQ8IW19 511 aaPredicted RBP15.12■□□□□ 0.01
CLSTN3-213ENST00000541953 SLC25A41Q8N5S1 370 aa15.12■□□□□ 0.01
CLSTN3-213ENST00000541953 LILRA3Q8N6C8 439 aaPredicted RBP15.12■□□□□ 0.01
CLSTN3-213ENST00000541953 SPDYE1Q8NFV5 336 aaPredicted RBP15.12■□□□□ 0.01
CLSTN3-213ENST00000541953 SLC35G2Q8TBE7 412 aa15.12■□□□□ 0.01
CLSTN3-213ENST00000541953 MRGPRX2Q96LB1 330 aa15.12■□□□□ 0.01
CLSTN3-213ENST00000541953 TEKT5Q96M29 485 aa15.12■□□□□ 0.01
CLSTN3-213ENST00000541953 IL17CQ9P0M4 197 aa15.12■□□□□ 0.01
CLSTN3-213ENST00000541953 LUZP4Q9P127 313 aa15.12■□□□□ 0.01
CLSTN3-213ENST00000541953 FAM8A1Q9UBU6 413 aa15.12■□□□□ 0.01
CLSTN3-213ENST00000541953 RARRES3Q9UL19 164 aa15.12■□□□□ 0.01
CLSTN3-213ENST00000541953 ITPR2Q14571 2701 aa15.12■□□□□ 0.01
CLSTN3-213ENST00000541953 CELSR2Q9HCU4 2923 aa15.11■□□□□ 0.01
CLSTN3-213ENST00000541953 A0A0A6YYK5 440 aaPredicted RBP15.11■□□□□ 0.01
CLSTN3-213ENST00000541953 LOC285095A0A1B0GVY8 99 aa15.11■□□□□ 0.01
CLSTN3-213ENST00000541953 OR5K3A6NET4 321 aa15.11■□□□□ 0.01
CLSTN3-213ENST00000541953 ARGFXA6NJG6 315 aa15.11■□□□□ 0.01
CLSTN3-213ENST00000541953 ZNF487B1APH4 448 aa15.11■□□□□ 0.01
CLSTN3-213ENST00000541953 SEMA7AO75326 666 aa15.11■□□□□ 0.01
CLSTN3-213ENST00000541953 TMEM253P0C7T8 217 aa15.11■□□□□ 0.01
CLSTN3-213ENST00000541953 TNNT1P13805 278 aa15.11■□□□□ 0.01
CLSTN3-213ENST00000541953 HNRNPH3P31942 346 aaKnown RBP15.11■□□□□ 0.01
CLSTN3-213ENST00000541953 HMGCLP35914 325 aa15.11■□□□□ 0.01
CLSTN3-213ENST00000541953 ANP32AP39687 249 aaKnown RBP15.11■□□□□ 0.01
CLSTN3-213ENST00000541953 PTGIRP43119 386 aa15.11■□□□□ 0.01
CLSTN3-213ENST00000541953 WNT3AP56704 352 aa15.11■□□□□ 0.01
CLSTN3-213ENST00000541953 PDK1Q15118 436 aa15.11■□□□□ 0.01
CLSTN3-213ENST00000541953 GPRC6AQ5T6X5 926 aa15.11■□□□□ 0.01
CLSTN3-213ENST00000541953 TMEM220Q6QAJ8 160 aa15.11■□□□□ 0.01
CLSTN3-213ENST00000541953 DET1Q7L5Y6 550 aa15.11■□□□□ 0.01
CLSTN3-213ENST00000541953 AMZ2Q86W34 360 aa15.11■□□□□ 0.01
CLSTN3-213ENST00000541953 RHOT1Q8IXI2 618 aa15.11■□□□□ 0.01
CLSTN3-213ENST00000541953 RBM12BQ8IXT5 1001 aaKnown RBP15.11■□□□□ 0.01
CLSTN3-213ENST00000541953 TRAF3IP1Q8TDR0 691 aaPredicted RBP15.11■□□□□ 0.01
CLSTN3-213ENST00000541953 ZNF514Q96K75 400 aaPredicted RBP15.11■□□□□ 0.01
CLSTN3-213ENST00000541953 INSM2Q96T92 566 aaPredicted RBP15.11■□□□□ 0.01
CLSTN3-213ENST00000541953 RAD18Q9NS91 495 aa15.11■□□□□ 0.01
CLSTN3-213ENST00000541953 FGF21Q9NSA1 209 aa15.11■□□□□ 0.01
CLSTN3-213ENST00000541953 SPTLC3Q9NUV7 552 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms