RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 TYW5A2RUC4 315 aaKnown RBP12.99□□□□□ -0.33
LDLR-203ENST00000535915 H3BNH8 94 aa12.99□□□□□ -0.33
LDLR-203ENST00000535915 TBL1XO60907 577 aa12.99□□□□□ -0.33
LDLR-203ENST00000535915 PRAMEF12O95522 483 aa12.99□□□□□ -0.33
LDLR-203ENST00000535915 GPIP06744 558 aa12.99□□□□□ -0.33
LDLR-203ENST00000535915 MRPL19P49406 292 aaKnown RBP12.99□□□□□ -0.33
LDLR-203ENST00000535915 CLCN7P51798 805 aa12.99□□□□□ -0.33
LDLR-203ENST00000535915 ADARP55265 1226 aaKnown RBP12.99□□□□□ -0.33
LDLR-203ENST00000535915 CACNG1Q06432 222 aa12.99□□□□□ -0.33
LDLR-203ENST00000535915 ATXN7L2Q5T6C5 722 aaPredicted RBP12.99□□□□□ -0.33
LDLR-203ENST00000535915 INTS11Q5TA45 600 aaKnown RBP12.99□□□□□ -0.33
LDLR-203ENST00000535915 LETMD1Q6P1Q0 360 aa12.99□□□□□ -0.33
LDLR-203ENST00000535915 LYSMD3Q7Z3D4 306 aa12.99□□□□□ -0.33
LDLR-203ENST00000535915 CMTR2Q8IYT2 770 aaKnown RBP12.99□□□□□ -0.33
LDLR-203ENST00000535915 FAM47BQ8NA70 645 aa12.99□□□□□ -0.33
LDLR-203ENST00000535915 TTC16Q8NEE8 873 aa12.99□□□□□ -0.33
LDLR-203ENST00000535915 HBEGFQ99075 208 aa12.99□□□□□ -0.33
LDLR-203ENST00000535915 KLF16Q9BXK1 252 aaPredicted RBP12.99□□□□□ -0.33
LDLR-203ENST00000535915 OLAHQ9NV23 265 aa12.99□□□□□ -0.33
LDLR-203ENST00000535915 NUDT4Q9NZJ9 180 aa12.99□□□□□ -0.33
LDLR-203ENST00000535915 IL17CQ9P0M4 197 aa12.99□□□□□ -0.33
LDLR-203ENST00000535915 BLOC1S6Q9UL45 172 aa12.99□□□□□ -0.33
LDLR-203ENST00000535915 PFDN1O60925 122 aa12.99□□□□□ -0.33
LDLR-203ENST00000535915 ALPIP09923 528 aa12.99□□□□□ -0.33
LDLR-203ENST00000535915 SPATA31D3P0C874 917 aa12.99□□□□□ -0.33
LDLR-203ENST00000535915 C18orf21Q32NC0 220 aaPredicted RBP12.99□□□□□ -0.33
LDLR-203ENST00000535915 C1QTNF12Q5T7M4 302 aa12.99□□□□□ -0.33
LDLR-203ENST00000535915 IL27RAQ6UWB1 636 aa12.99□□□□□ -0.33
LDLR-203ENST00000535915 Q6ZSR9 355 aa12.99□□□□□ -0.33
LDLR-203ENST00000535915 SPATA31D4Q6ZUB0 917 aa12.99□□□□□ -0.33
LDLR-203ENST00000535915 EPHX4Q8IUS5 362 aa12.99□□□□□ -0.33
LDLR-203ENST00000535915 KIAA2013Q8IYS2 634 aa12.99□□□□□ -0.33
LDLR-203ENST00000535915 LRRC43Q8N309 656 aa12.99□□□□□ -0.33
LDLR-203ENST00000535915 PACRGLQ8N7B6 248 aa12.99□□□□□ -0.33
LDLR-203ENST00000535915 CD99L2Q8TCZ2 262 aa12.99□□□□□ -0.33
LDLR-203ENST00000535915 TFAP2CQ92754 450 aa12.99□□□□□ -0.33
LDLR-203ENST00000535915 CENPNQ96H22 339 aaPredicted RBP12.99□□□□□ -0.33
LDLR-203ENST00000535915 RPL10LQ96L21 214 aaKnown RBP12.99□□□□□ -0.33
LDLR-203ENST00000535915 P2RY12Q9H244 342 aa12.99□□□□□ -0.33
LDLR-203ENST00000535915 PIF1Q9H611 641 aa12.99□□□□□ -0.33
LDLR-203ENST00000535915 TMEM165Q9HC07 324 aa12.99□□□□□ -0.33
LDLR-203ENST00000535915 INTS7Q9NVH2 962 aaKnown RBP12.99□□□□□ -0.33
LDLR-203ENST00000535915 ZIM2Q9NZV7 527 aa12.99□□□□□ -0.33
LDLR-203ENST00000535915 DHRS7Q9Y394 339 aa12.99□□□□□ -0.33
LDLR-203ENST00000535915 PCDHGA4Q9Y5G9 962 aa12.99□□□□□ -0.33
LDLR-203ENST00000535915 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.98□□□□□ -0.33
LDLR-203ENST00000535915 FAM234BA2RU67 622 aa12.98□□□□□ -0.33
LDLR-203ENST00000535915 PRMT5O14744 637 aaPredicted RBP12.98□□□□□ -0.33
LDLR-203ENST00000535915 S100BP04271 92 aaPredicted RBP12.98□□□□□ -0.33
LDLR-203ENST00000535915 CAPN1P07384 714 aa12.98□□□□□ -0.33
LDLR-203ENST00000535915 HOXD10P28358 340 aa12.98□□□□□ -0.33
LDLR-203ENST00000535915 IL12AP29459 219 aa12.98□□□□□ -0.33
LDLR-203ENST00000535915 PTRHD1Q6GMV3 140 aaKnown RBP12.98□□□□□ -0.33
LDLR-203ENST00000535915 NANOGP8Q6NSW7 305 aa12.98□□□□□ -0.33
LDLR-203ENST00000535915 PTRH1Q86Y79 214 aaKnown RBP12.98□□□□□ -0.33
LDLR-203ENST00000535915 PAF1Q8N7H5 531 aa12.98□□□□□ -0.33
LDLR-203ENST00000535915 TRPV3Q8NET8 790 aa12.98□□□□□ -0.33
LDLR-203ENST00000535915 GRIN3AQ8TCU5 1115 aa12.98□□□□□ -0.33
LDLR-203ENST00000535915 PROKR1Q8TCW9 393 aa12.98□□□□□ -0.33
LDLR-203ENST00000535915 BHMTQ93088 406 aa12.98□□□□□ -0.33
LDLR-203ENST00000535915 EID2BQ96D98 161 aa12.98□□□□□ -0.33
LDLR-203ENST00000535915 C9orf16Q9BUW7 83 aa12.98□□□□□ -0.33
LDLR-203ENST00000535915 MUC13Q9H3R2 512 aa12.98□□□□□ -0.33
LDLR-203ENST00000535915 NANOGQ9H9S0 305 aa12.98□□□□□ -0.33
LDLR-203ENST00000535915 SMOXQ9NWM0 555 aa12.98□□□□□ -0.33
LDLR-203ENST00000535915 AFF4Q9UHB7 1163 aaKnown RBP12.98□□□□□ -0.33
LDLR-203ENST00000535915 OAZ3Q9UMX2 235 aa12.98□□□□□ -0.33
LDLR-203ENST00000535915 GOLGA8CPA6NN73 597 aa12.98□□□□□ -0.33
LDLR-203ENST00000535915 H3BSA7 217 aa12.98□□□□□ -0.33
LDLR-203ENST00000535915 KATNA1O75449 491 aa12.98□□□□□ -0.33
LDLR-203ENST00000535915 ZNF23P17027 643 aa12.98□□□□□ -0.33
LDLR-203ENST00000535915 ITGB6P18564 788 aa12.98□□□□□ -0.33
LDLR-203ENST00000535915 HMGCLP35914 325 aa12.98□□□□□ -0.33
LDLR-203ENST00000535915 CCT8P50990 548 aa12.98□□□□□ -0.33
LDLR-203ENST00000535915 PRKG2Q13237 762 aa12.98□□□□□ -0.33
LDLR-203ENST00000535915 INO80DQ53TQ3 878 aaPredicted RBP12.98□□□□□ -0.33
LDLR-203ENST00000535915 FAM151BQ6UXP7 276 aa12.98□□□□□ -0.33
LDLR-203ENST00000535915 GOLGA7Q7Z5G4 137 aa12.98□□□□□ -0.33
LDLR-203ENST00000535915 ADAMTSL2Q86TH1 951 aa12.98□□□□□ -0.33
LDLR-203ENST00000535915 CRIPAKQ8N1N5 446 aa12.98□□□□□ -0.33
LDLR-203ENST00000535915 MFSD2AQ8NA29 543 aa12.98□□□□□ -0.33
LDLR-203ENST00000535915 FEM1AQ9BSK4 669 aa12.98□□□□□ -0.33
LDLR-203ENST00000535915 TM6SF2Q9BZW4 377 aa12.98□□□□□ -0.33
LDLR-203ENST00000535915 CIPCQ9C0C6 399 aa12.98□□□□□ -0.33
LDLR-203ENST00000535915 PCDHB1Q9Y5F3 818 aa12.98□□□□□ -0.33
LDLR-203ENST00000535915 SCN8AQ9UQD0 1980 aa12.98□□□□□ -0.33
LDLR-203ENST00000535915 ATP6V1G1O75348 118 aa12.98□□□□□ -0.33
LDLR-203ENST00000535915 INHAP05111 366 aa12.98□□□□□ -0.33
LDLR-203ENST00000535915 GNAO1P09471 354 aa12.98□□□□□ -0.33
LDLR-203ENST00000535915 MBL2P11226 248 aaPredicted RBP12.98□□□□□ -0.33
LDLR-203ENST00000535915 FCGR1AP12314 374 aa12.98□□□□□ -0.33
LDLR-203ENST00000535915 HTR6P50406 440 aa12.98□□□□□ -0.33
LDLR-203ENST00000535915 EEFSECP57772 596 aaKnown RBP12.98□□□□□ -0.33
LDLR-203ENST00000535915 AASDHQ4L235 1098 aaPredicted RBP12.98□□□□□ -0.33
LDLR-203ENST00000535915 SLC2A7Q6PXP3 512 aa12.98□□□□□ -0.33
LDLR-203ENST00000535915 ZNF783Q6ZMS7 281 aa12.98□□□□□ -0.33
LDLR-203ENST00000535915 SFRP1Q8N474 314 aa12.98□□□□□ -0.33
LDLR-203ENST00000535915 OR4F6Q8NGB9 312 aa12.98□□□□□ -0.33
LDLR-203ENST00000535915 OR6K2Q8NGY2 324 aa12.98□□□□□ -0.33
LDLR-203ENST00000535915 CCDC97Q96F63 343 aaPredicted RBP12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 83.2 ms