RNA–Protein interactions for RNA: ENST00000511859.5

RNF4-216, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 1,373 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-216ENST00000511859 FECHP22830 423 aa11.31□□□□□ -0.6
RNF4-216ENST00000511859 RPL10P27635 214 aaKnown RBP11.31□□□□□ -0.6
RNF4-216ENST00000511859 RORAP35398 523 aa11.31□□□□□ -0.6
RNF4-216ENST00000511859 SOX8P57073 446 aa11.31□□□□□ -0.6
RNF4-216ENST00000511859 RPL26P61254 145 aaKnown RBP11.31□□□□□ -0.6
RNF4-216ENST00000511859 PPP1CAP62136 330 aa11.31□□□□□ -0.6
RNF4-216ENST00000511859 SSPNQ14714 243 aa11.31□□□□□ -0.6
RNF4-216ENST00000511859 PLCL1Q15111 1095 aa11.31□□□□□ -0.6
RNF4-216ENST00000511859 LLGL1Q15334 1064 aa11.31□□□□□ -0.6
RNF4-216ENST00000511859 SEPT7Q16181 437 aaKnown RBP11.31□□□□□ -0.6
RNF4-216ENST00000511859 DNTTIP2Q5QJE6 756 aaKnown RBP11.31□□□□□ -0.6
RNF4-216ENST00000511859 CERS6Q6ZMG9 384 aa11.31□□□□□ -0.6
RNF4-216ENST00000511859 MON1BQ7L1V2 547 aa11.31□□□□□ -0.6
RNF4-216ENST00000511859 FJX1Q86VR8 437 aa11.31□□□□□ -0.6
RNF4-216ENST00000511859 CARFQ8N187 725 aa11.31□□□□□ -0.6
RNF4-216ENST00000511859 FAR1Q8WVX9 515 aa11.31□□□□□ -0.6
RNF4-216ENST00000511859 HDAC11Q96DB2 347 aa11.31□□□□□ -0.6
RNF4-216ENST00000511859 CLIP3Q96DZ5 547 aa11.31□□□□□ -0.6
RNF4-216ENST00000511859 DPH2Q9BQC3 489 aaPredicted RBP11.31□□□□□ -0.6
RNF4-216ENST00000511859 DHRS4Q9BTZ2 278 aa11.31□□□□□ -0.6
RNF4-216ENST00000511859 SNRNP25Q9BV90 132 aaKnown RBP11.31□□□□□ -0.6
RNF4-216ENST00000511859 ZWILCHQ9H900 591 aa11.31□□□□□ -0.6
RNF4-216ENST00000511859 CWC15Q9P013 229 aaKnown RBP11.31□□□□□ -0.6
RNF4-216ENST00000511859 RPL26L1Q9UNX3 145 aaKnown RBP11.31□□□□□ -0.6
RNF4-216ENST00000511859 DNAJC16Q9Y2G8 782 aa11.31□□□□□ -0.6
RNF4-216ENST00000511859 PADI2Q9Y2J8 665 aa11.31□□□□□ -0.6
RNF4-216ENST00000511859 HAX1O00165 279 aa11.3□□□□□ -0.6
RNF4-216ENST00000511859 KCNJ13O60928 360 aa11.3□□□□□ -0.6
RNF4-216ENST00000511859 BPIP17213 487 aa11.3□□□□□ -0.6
RNF4-216ENST00000511859 VCLP18206 1134 aa11.3□□□□□ -0.6
RNF4-216ENST00000511859 CA4P22748 312 aa11.3□□□□□ -0.6
RNF4-216ENST00000511859 CA5AP35218 305 aa11.3□□□□□ -0.6
RNF4-216ENST00000511859 SOX5P35711 763 aa11.3□□□□□ -0.6
RNF4-216ENST00000511859 HALP42357 657 aa11.3□□□□□ -0.6
RNF4-216ENST00000511859 ITKQ08881 620 aa11.3□□□□□ -0.6
RNF4-216ENST00000511859 DPYSQ14117 519 aa11.3□□□□□ -0.6
RNF4-216ENST00000511859 HSP90AA4PQ58FG1 418 aa11.3□□□□□ -0.6
RNF4-216ENST00000511859 DCAF10Q5QP82 559 aa11.3□□□□□ -0.6
RNF4-216ENST00000511859 FAM69BQ5VUD6 431 aa11.3□□□□□ -0.6
RNF4-216ENST00000511859 ADGRG6Q86SQ4 1221 aa11.3□□□□□ -0.6
RNF4-216ENST00000511859 LRRC49Q8IUZ0 686 aa11.3□□□□□ -0.6
RNF4-216ENST00000511859 TEX26Q8N6G2 289 aa11.3□□□□□ -0.6
RNF4-216ENST00000511859 RELTQ969Z4 430 aa11.3□□□□□ -0.6
RNF4-216ENST00000511859 POLR1EQ9GZS1 481 aaKnown RBP11.3□□□□□ -0.6
RNF4-216ENST00000511859 FANCEQ9HB96 536 aa11.3□□□□□ -0.6
RNF4-216ENST00000511859 SYTL2Q9HCH5 934 aa11.3□□□□□ -0.6
RNF4-216ENST00000511859 NT5MQ9NPB1 228 aa11.3□□□□□ -0.6
RNF4-216ENST00000511859 PCSK1NQ9UHG2 260 aa11.3□□□□□ -0.6
RNF4-216ENST00000511859 C1orf232A0A0U1RR37 186 aa11.29□□□□□ -0.6
RNF4-216ENST00000511859 A0A1W2PQJ5 194 aa11.29□□□□□ -0.6
RNF4-216ENST00000511859 PES1O00541 588 aaKnown RBP11.29□□□□□ -0.6
RNF4-216ENST00000511859 PEX12O00623 359 aa11.29□□□□□ -0.6
RNF4-216ENST00000511859 E2F3O00716 465 aa11.29□□□□□ -0.6
RNF4-216ENST00000511859 PRPSAP2O60256 369 aa11.29□□□□□ -0.6
RNF4-216ENST00000511859 RNF8O76064 485 aa11.29□□□□□ -0.6
RNF4-216ENST00000511859 COX6B1P14854 86 aa11.29□□□□□ -0.6
RNF4-216ENST00000511859 CAPN3P20807 821 aa11.29□□□□□ -0.6
RNF4-216ENST00000511859 PSMA2P25787 234 aa11.29□□□□□ -0.6
RNF4-216ENST00000511859 TSFMP43897 325 aaKnown RBP11.29□□□□□ -0.6
RNF4-216ENST00000511859 ARCN1P48444 511 aaKnown RBP11.29□□□□□ -0.6
RNF4-216ENST00000511859 DRG2P55039 364 aaKnown RBP11.29□□□□□ -0.6
RNF4-216ENST00000511859 OGDHQ02218 1023 aa11.29□□□□□ -0.6
RNF4-216ENST00000511859 ADCY2Q08462 1091 aa11.29□□□□□ -0.6
RNF4-216ENST00000511859 NCF4Q15080 339 aa11.29□□□□□ -0.6
RNF4-216ENST00000511859 SYCP1Q15431 976 aa11.29□□□□□ -0.6
RNF4-216ENST00000511859 GPR19Q15760 415 aa11.29□□□□□ -0.6
RNF4-216ENST00000511859 PLA2G4EQ3MJ16 856 aa11.29□□□□□ -0.6
RNF4-216ENST00000511859 VWA2Q5GFL6 755 aa11.29□□□□□ -0.6
RNF4-216ENST00000511859 ZNF569Q5MCW4 686 aa11.29□□□□□ -0.6
RNF4-216ENST00000511859 PDPK2PQ6A1A2 396 aa11.29□□□□□ -0.6
RNF4-216ENST00000511859 FCRL6Q6DN72 434 aa11.29□□□□□ -0.6
RNF4-216ENST00000511859 CRTC3Q6UUV7 619 aa11.29□□□□□ -0.6
RNF4-216ENST00000511859 FAM198BQ6UWH4 519 aa11.29□□□□□ -0.6
RNF4-216ENST00000511859 TMCO3Q6UWJ1 677 aa11.29□□□□□ -0.6
RNF4-216ENST00000511859 PARP9Q8IXQ6 854 aa11.29□□□□□ -0.6
RNF4-216ENST00000511859 SYTL1Q8IYJ3 562 aa11.29□□□□□ -0.6
RNF4-216ENST00000511859 ATPAF2Q8N5M1 289 aa11.29□□□□□ -0.6
RNF4-216ENST00000511859 GRHL3Q8TE85 626 aa11.29□□□□□ -0.6
RNF4-216ENST00000511859 WDR77Q9BQA1 342 aaPredicted RBP11.29□□□□□ -0.6
RNF4-216ENST00000511859 C17orf62Q9BQA9 187 aa11.29□□□□□ -0.6
RNF4-216ENST00000511859 ZSCAN5AQ9BUG6 496 aa11.29□□□□□ -0.6
RNF4-216ENST00000511859 SPATA16Q9BXB7 569 aa11.29□□□□□ -0.6
RNF4-216ENST00000511859 TDRD1Q9BXT4 1180 aaKnown RBP11.29□□□□□ -0.6
RNF4-216ENST00000511859 ARFGAP3Q9NP61 516 aa11.29□□□□□ -0.6
RNF4-216ENST00000511859 PCMTD2Q9NV79 361 aa11.29□□□□□ -0.6
RNF4-216ENST00000511859 HAUS2Q9NVX0 235 aa11.29□□□□□ -0.6
RNF4-216ENST00000511859 HRASLS2Q9NWW9 162 aa11.29□□□□□ -0.6
RNF4-216ENST00000511859 CHKBQ9Y259 395 aa11.29□□□□□ -0.6
RNF4-216ENST00000511859 BTRCQ9Y297 605 aa11.29□□□□□ -0.6
RNF4-216ENST00000511859 ANKRD66B4E2M5 251 aa11.28□□□□□ -0.6
RNF4-216ENST00000511859 C9J4A7 227 aa11.28□□□□□ -0.6
RNF4-216ENST00000511859 CDK14O94921 469 aa11.28□□□□□ -0.6
RNF4-216ENST00000511859 PRLP01236 227 aa11.28□□□□□ -0.6
RNF4-216ENST00000511859 CD63P08962 238 aa11.28□□□□□ -0.6
RNF4-216ENST00000511859 ATP1A3P13637 1013 aa11.28□□□□□ -0.6
RNF4-216ENST00000511859 AGXTP21549 392 aa11.28□□□□□ -0.6
RNF4-216ENST00000511859 OTX2P32243 289 aa11.28□□□□□ -0.6
RNF4-216ENST00000511859 ARL4AP40617 200 aa11.28□□□□□ -0.6
RNF4-216ENST00000511859 JAM2P57087 298 aa11.28□□□□□ -0.6
RNF4-216ENST00000511859 ZNF630Q2M218 657 aaPredicted RBP11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms