RNA–Protein interactions for RNA: ENST00000474828.1

SCAF11-206, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 757 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-206ENST00000474828 SFTPA2Q8IWL1 248 aa16.65■□□□□ 0.26
SCAF11-206ENST00000474828 CTAGE4Q8IX94 777 aa16.65■□□□□ 0.26
SCAF11-206ENST00000474828 CEP112Q8N8E3 955 aa16.65■□□□□ 0.26
SCAF11-206ENST00000474828 ZDHHC1Q8WTX9 485 aa16.65■□□□□ 0.26
SCAF11-206ENST00000474828 TBRG4Q969Z0 631 aaKnown RBP eCLIP16.65■□□□□ 0.26
SCAF11-206ENST00000474828 DCUN1D1Q96GG9 259 aa16.65■□□□□ 0.26
SCAF11-206ENST00000474828 TTC1Q99614 292 aa16.65■□□□□ 0.26
SCAF11-206ENST00000474828 TRIM31Q9BZY9 425 aa16.65■□□□□ 0.26
SCAF11-206ENST00000474828 P2RY12Q9H244 342 aa16.65■□□□□ 0.26
SCAF11-206ENST00000474828 DPEP2Q9H4A9 486 aa16.65■□□□□ 0.26
SCAF11-206ENST00000474828 KLC4Q9NSK0 619 aa16.65■□□□□ 0.26
SCAF11-206ENST00000474828 SPTBN2O15020 2390 aa16.65■□□□□ 0.26
SCAF11-206ENST00000474828 KIR2DS5A0A0G2JLQ3 304 aa16.64■□□□□ 0.25
SCAF11-206ENST00000474828 A0A0G2JNG1 304 aa16.64■□□□□ 0.25
SCAF11-206ENST00000474828 OR2AG2A6NM03 316 aa16.64■□□□□ 0.25
SCAF11-206ENST00000474828 KIR2DS3K7RE56 304 aa16.64■□□□□ 0.25
SCAF11-206ENST00000474828 EIF3HO15372 352 aaKnown RBP eCLIP16.64■□□□□ 0.25
SCAF11-206ENST00000474828 RFPL3O75679 317 aa16.64■□□□□ 0.25
SCAF11-206ENST00000474828 ADRB1P08588 477 aa16.64■□□□□ 0.25
SCAF11-206ENST00000474828 BRAFP15056 766 aa16.64■□□□□ 0.25
SCAF11-206ENST00000474828 VCLP18206 1134 aa16.64■□□□□ 0.25
SCAF11-206ENST00000474828 RPS3P23396 243 aaKnown RBP eCLIP16.64■□□□□ 0.25
SCAF11-206ENST00000474828 PPARGP37231 505 aaPredicted RBP16.64■□□□□ 0.25
SCAF11-206ENST00000474828 E2F1Q01094 437 aa16.64■□□□□ 0.25
SCAF11-206ENST00000474828 CRYMQ14894 314 aa16.64■□□□□ 0.25
SCAF11-206ENST00000474828 KIR2DS5Q14953 304 aa16.64■□□□□ 0.25
SCAF11-206ENST00000474828 SMAD1Q15797 465 aaKnown RBP16.64■□□□□ 0.25
SCAF11-206ENST00000474828 SPANXN3Q5MJ09 141 aa16.64■□□□□ 0.25
SCAF11-206ENST00000474828 CHCHD2P9Q5T1J5 151 aaPredicted RBP16.64■□□□□ 0.25
SCAF11-206ENST00000474828 MRNIPQ6NTE8 343 aa16.64■□□□□ 0.25
SCAF11-206ENST00000474828 NEPROQ6NW34 567 aa16.64■□□□□ 0.25
SCAF11-206ENST00000474828 C8orf74Q6P047 294 aa16.64■□□□□ 0.25
SCAF11-206ENST00000474828 CASC4Q6P4E1 433 aa16.64■□□□□ 0.25
SCAF11-206ENST00000474828 GUSBP11Q6P575 273 aa16.64■□□□□ 0.25
SCAF11-206ENST00000474828 CRTC3Q6UUV7 619 aa16.64■□□□□ 0.25
SCAF11-206ENST00000474828 LRRC6Q86X45 466 aa16.64■□□□□ 0.25
SCAF11-206ENST00000474828 CILP2Q8IUL8 1156 aa16.64■□□□□ 0.25
SCAF11-206ENST00000474828 ARL14Q8N4G2 192 aa16.64■□□□□ 0.25
SCAF11-206ENST00000474828 CLDN19Q8N6F1 224 aa16.64■□□□□ 0.25
SCAF11-206ENST00000474828 PWWP2AQ96N64 755 aa16.64■□□□□ 0.25
SCAF11-206ENST00000474828 CNTNAP3BQ96NU0 1288 aa16.64■□□□□ 0.25
SCAF11-206ENST00000474828 CNTNAP3Q9BZ76 1288 aa16.64■□□□□ 0.25
SCAF11-206ENST00000474828 FAM129AQ9BZQ8 928 aa16.64■□□□□ 0.25
SCAF11-206ENST00000474828 FOXP3Q9BZS1 431 aa16.64■□□□□ 0.25
SCAF11-206ENST00000474828 ZDHHC18Q9NUE0 388 aa16.64■□□□□ 0.25
SCAF11-206ENST00000474828 KCNK6Q9Y257 313 aa16.64■□□□□ 0.25
SCAF11-206ENST00000474828 PRSS21Q9Y6M0 314 aa16.64■□□□□ 0.25
SCAF11-206ENST00000474828 MYF5P13349 255 aa16.63■□□□□ 0.25
SCAF11-206ENST00000474828 SLC2A4P14672 509 aa16.63■□□□□ 0.25
SCAF11-206ENST00000474828 XRCC1P18887 633 aaPredicted RBP16.63■□□□□ 0.25
SCAF11-206ENST00000474828 PMLP29590 882 aa16.63■□□□□ 0.25
SCAF11-206ENST00000474828 UBE2IP63279 158 aaKnown RBP16.63■□□□□ 0.25
SCAF11-206ENST00000474828 CALCOCO2Q13137 446 aa16.63■□□□□ 0.25
SCAF11-206ENST00000474828 SQSTM1Q13501 440 aa16.63■□□□□ 0.25
SCAF11-206ENST00000474828 TRADDQ15628 312 aa16.63■□□□□ 0.25
SCAF11-206ENST00000474828 LONRF1Q17RB8 773 aa16.63■□□□□ 0.25
SCAF11-206ENST00000474828 INSCQ1MX18 579 aa16.63■□□□□ 0.25
SCAF11-206ENST00000474828 FAM83HQ6ZRV2 1179 aaPredicted RBP16.63■□□□□ 0.25
SCAF11-206ENST00000474828 CYS1Q717R9 158 aa16.63■□□□□ 0.25
SCAF11-206ENST00000474828 CENPUQ71F23 418 aa16.63■□□□□ 0.25
SCAF11-206ENST00000474828 CNTN4Q8IWV2 1026 aa16.63■□□□□ 0.25
SCAF11-206ENST00000474828 BEND7Q8N7W2 519 aaPredicted RBP16.63■□□□□ 0.25
SCAF11-206ENST00000474828 PNPLA1Q8N8W4 532 aa16.63■□□□□ 0.25
SCAF11-206ENST00000474828 SERBP1Q8NC51 408 aaKnown RBP eCLIP16.63■□□□□ 0.25
SCAF11-206ENST00000474828 HM13Q8TCT9 377 aa16.63■□□□□ 0.25
SCAF11-206ENST00000474828 SLC37A2Q8TED4 501 aa16.63■□□□□ 0.25
SCAF11-206ENST00000474828 LPGAT1Q92604 370 aa16.63■□□□□ 0.25
SCAF11-206ENST00000474828 ZNF669Q96BR6 464 aaPredicted RBP16.63■□□□□ 0.25
SCAF11-206ENST00000474828 CCM2Q9BSQ5 444 aa16.63■□□□□ 0.25
SCAF11-206ENST00000474828 DPH5Q9H2P9 285 aa16.63■□□□□ 0.25
SCAF11-206ENST00000474828 UCK1Q9HA47 277 aa16.63■□□□□ 0.25
SCAF11-206ENST00000474828 SARS2Q9NP81 518 aaKnown RBP16.63■□□□□ 0.25
SCAF11-206ENST00000474828 ACSL5Q9ULC5 683 aa16.63■□□□□ 0.25
SCAF11-206ENST00000474828 MAD1L1Q9Y6D9 718 aa16.63■□□□□ 0.25
SCAF11-206ENST00000474828 ZFC3H1O60293 1989 aaKnown RBP16.63■□□□□ 0.25
SCAF11-206ENST00000474828 ARHGEF17Q96PE2 2063 aaPredicted RBP16.62■□□□□ 0.25
SCAF11-206ENST00000474828 B4DGG1 531 aa16.62■□□□□ 0.25
SCAF11-206ENST00000474828 NTN3O00634 580 aaPredicted RBP16.62■□□□□ 0.25
SCAF11-206ENST00000474828 PRMT5O14744 637 aaPredicted RBP16.62■□□□□ 0.25
SCAF11-206ENST00000474828 OR1I1O60431 355 aa16.62■□□□□ 0.25
SCAF11-206ENST00000474828 BANF1O75531 89 aa16.62■□□□□ 0.25
SCAF11-206ENST00000474828 S1PR4O95977 384 aa16.62■□□□□ 0.25
SCAF11-206ENST00000474828 IDSP22304 550 aa16.62■□□□□ 0.25
SCAF11-206ENST00000474828 ELK3P41970 407 aa16.62■□□□□ 0.25
SCAF11-206ENST00000474828 GPR3P46089 330 aa16.62■□□□□ 0.25
SCAF11-206ENST00000474828 SHC2P98077 582 aa16.62■□□□□ 0.25
SCAF11-206ENST00000474828 DAB2P98082 770 aa16.62■□□□□ 0.25
SCAF11-206ENST00000474828 RPA4Q13156 261 aa16.62■□□□□ 0.25
SCAF11-206ENST00000474828 TCEA2Q15560 299 aa16.62■□□□□ 0.25
SCAF11-206ENST00000474828 BBS9Q3SYG4 887 aa16.62■□□□□ 0.25
SCAF11-206ENST00000474828 PERM1Q5SV97 790 aa16.62■□□□□ 0.25
SCAF11-206ENST00000474828 RNF187Q5TA31 235 aaPredicted RBP16.62■□□□□ 0.25
SCAF11-206ENST00000474828 CDCP2Q5VXM1 449 aa16.62■□□□□ 0.25
SCAF11-206ENST00000474828 CAPRIN2Q6IMN6 1127 aaKnown RBP16.62■□□□□ 0.25
SCAF11-206ENST00000474828 DET1Q7L5Y6 550 aa16.62■□□□□ 0.25
SCAF11-206ENST00000474828 EFL1Q7Z2Z2 1120 aaKnown RBP16.62■□□□□ 0.25
SCAF11-206ENST00000474828 GALNT7Q86SF2 657 aa16.62■□□□□ 0.25
SCAF11-206ENST00000474828 AVL9Q8NBF6 648 aa16.62■□□□□ 0.25
SCAF11-206ENST00000474828 WDR48Q8TAF3 677 aa16.62■□□□□ 0.25
SCAF11-206ENST00000474828 IFI44Q8TCB0 444 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms