RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 COMMD10Q9Y6G5 202 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 PRSS21Q9Y6M0 314 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 C1orf232A0A0U1RR37 186 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 SMIM31A0A1B0GVY4 71 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 ARHGAP10A1A4S6 786 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 PDLIM1O00151 329 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 OR7A17O14581 309 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 HTRA2O43464 458 aaPredicted RBP8.83□□□□□ -1
SYNE1-217ENST00000466159 EEDO75530 441 aaKnown RBP8.83□□□□□ -1
SYNE1-217ENST00000466159 CXCL10P02778 98 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 CNPP09543 421 aaKnown RBP8.83□□□□□ -1
SYNE1-217ENST00000466159 UGT1A1P22309 533 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 UGT1A4P22310 534 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 UGT1A3P35503 534 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 UGT1A5P35504 534 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 NAA20P61599 178 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 TXNL4AP83876 142 aaKnown RBP8.83□□□□□ -1
SYNE1-217ENST00000466159 SEMG2Q02383 582 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 LIPEQ05469 1076 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 BNIP2Q12982 314 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 GRIK2Q13002 908 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 AAK1Q2M2I8 961 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 SLC5A9Q2M3M2 681 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 PLA2G4EQ3MJ16 856 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 ATP6AP1LQ52LC2 224 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 TPGS2Q68CL5 300 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 LCN8Q6JVE9 175 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 IL27RAQ6UWB1 636 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 RBM44Q6ZP01 1051 aaKnown RBP8.83□□□□□ -1
SYNE1-217ENST00000466159 GOLGA7Q7Z5G4 137 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 TMEM199Q8N511 208 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 PAF1Q8N7H5 531 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 HJURPQ8NCD3 748 aaPredicted RBP8.83□□□□□ -1
SYNE1-217ENST00000466159 OR4F6Q8NGB9 312 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 TSPEARQ8WU66 669 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 C17orf80Q9BSJ5 609 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 MRPS26Q9BYN8 205 aaKnown RBP8.83□□□□□ -1
SYNE1-217ENST00000466159 TRIM54Q9BYV2 358 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 ALG2Q9H553 416 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 PIF1Q9H611 641 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 NSUN3Q9H649 340 aaKnown RBP8.83□□□□□ -1
SYNE1-217ENST00000466159 ASB8Q9H765 288 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 ZFYVE1Q9HBF4 777 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 DUS2Q9NX74 493 aaKnown RBP8.83□□□□□ -1
SYNE1-217ENST00000466159 NUDT4Q9NZJ9 180 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 DNMT3BQ9UBC3 853 aaKnown RBP8.83□□□□□ -1
SYNE1-217ENST00000466159 CPQQ9Y646 472 aa8.83□□□□□ -1
SYNE1-217ENST00000466159 VILLO15195 856 aa8.82□□□□□ -1
SYNE1-217ENST00000466159 INPP4BO15327 924 aa8.82□□□□□ -1
SYNE1-217ENST00000466159 FFAR2O15552 330 aa8.82□□□□□ -1
SYNE1-217ENST00000466159 TRIM16O95361 564 aa8.82□□□□□ -1
SYNE1-217ENST00000466159 CLDN7O95471 211 aa8.82□□□□□ -1
SYNE1-217ENST00000466159 PSMA4P25789 261 aaKnown RBP8.82□□□□□ -1
SYNE1-217ENST00000466159 HSPA7P48741 367 aa8.82□□□□□ -1
SYNE1-217ENST00000466159 FOXM1Q08050 763 aa8.82□□□□□ -1
SYNE1-217ENST00000466159 APOFQ13790 326 aa8.82□□□□□ -1
SYNE1-217ENST00000466159 GTF2H2Q13888 395 aa8.82□□□□□ -1
SYNE1-217ENST00000466159 INPP5AQ14642 412 aa8.82□□□□□ -1
SYNE1-217ENST00000466159 DEFB115Q30KQ5 88 aa8.82□□□□□ -1
SYNE1-217ENST00000466159 PDCD4Q53EL6 469 aaKnown RBP8.82□□□□□ -1
SYNE1-217ENST00000466159 NANOGP8Q6NSW7 305 aa8.82□□□□□ -1
SYNE1-217ENST00000466159 PPP4R4Q6NUP7 873 aa8.82□□□□□ -1
SYNE1-217ENST00000466159 GTF2H2CQ6P1K8 395 aa8.82□□□□□ -1
SYNE1-217ENST00000466159 SLC2A7Q6PXP3 512 aa8.82□□□□□ -1
SYNE1-217ENST00000466159 CARM1Q86X55 608 aa8.82□□□□□ -1
SYNE1-217ENST00000466159 EPHX4Q8IUS5 362 aa8.82□□□□□ -1
SYNE1-217ENST00000466159 CMTR2Q8IYT2 770 aaKnown RBP8.82□□□□□ -1
SYNE1-217ENST00000466159 ADGRG5Q8IZF4 528 aa8.82□□□□□ -1
SYNE1-217ENST00000466159 GRIN3AQ8TCU5 1115 aa8.82□□□□□ -1
SYNE1-217ENST00000466159 DDI1Q8WTU0 396 aa8.82□□□□□ -1
SYNE1-217ENST00000466159 PDLIM5Q96HC4 596 aaKnown RBP8.82□□□□□ -1
SYNE1-217ENST00000466159 TRIM15Q9C019 465 aa8.82□□□□□ -1
SYNE1-217ENST00000466159 CLPBQ9H078 707 aa8.82□□□□□ -1
SYNE1-217ENST00000466159 EPB41L1Q9H4G0 881 aa8.82□□□□□ -1
SYNE1-217ENST00000466159 NANOGQ9H9S0 305 aa8.82□□□□□ -1
SYNE1-217ENST00000466159 IL26Q9NPH9 171 aa8.82□□□□□ -1
SYNE1-217ENST00000466159 RIC8BQ9NVN3 520 aa8.82□□□□□ -1
SYNE1-217ENST00000466159 ELOVL2Q9NXB9 296 aa8.82□□□□□ -1
SYNE1-217ENST00000466159 HSFX1Q9UBD0 423 aa8.82□□□□□ -1
SYNE1-217ENST00000466159 ZMYM5Q9UJ78 669 aa8.82□□□□□ -1
SYNE1-217ENST00000466159 TMCO1Q9UM00 188 aa8.82□□□□□ -1
SYNE1-217ENST00000466159 PCDHB1Q9Y5F3 818 aa8.82□□□□□ -1
SYNE1-217ENST00000466159 ST14Q9Y5Y6 855 aa8.82□□□□□ -1
SYNE1-217ENST00000466159 TYW5A2RUC4 315 aaKnown RBP8.82□□□□□ -1
SYNE1-217ENST00000466159 GOLGA8CPA6NN73 597 aa8.82□□□□□ -1
SYNE1-217ENST00000466159 GFRA2O00451 464 aa8.82□□□□□ -1
SYNE1-217ENST00000466159 HNRNPRO43390 633 aaKnown RBP8.82□□□□□ -1
SYNE1-217ENST00000466159 SLC25A14O95258 325 aaPredicted RBP8.82□□□□□ -1
SYNE1-217ENST00000466159 G6PDP11413 515 aa8.82□□□□□ -1
SYNE1-217ENST00000466159 ZNF7P17097 686 aaPredicted RBP8.82□□□□□ -1
SYNE1-217ENST00000466159 IL10P22301 178 aa8.82□□□□□ -1
SYNE1-217ENST00000466159 HNF1BP35680 557 aa8.82□□□□□ -1
SYNE1-217ENST00000466159 GDF5P43026 501 aa8.82□□□□□ -1
SYNE1-217ENST00000466159 MRPL19P49406 292 aaKnown RBP8.82□□□□□ -1
SYNE1-217ENST00000466159 AP1S1P61966 158 aa8.82□□□□□ -1
SYNE1-217ENST00000466159 NFATC2Q13469 925 aa8.82□□□□□ -1
SYNE1-217ENST00000466159 ABRAXAS2Q15018 415 aa8.82□□□□□ -1
SYNE1-217ENST00000466159 PCBP2Q15366 365 aaKnown RBP eCLIP8.82□□□□□ -1
SYNE1-217ENST00000466159 CYP51A1Q16850 503 aa8.82□□□□□ -1
SYNE1-217ENST00000466159 MYLK3Q32MK0 819 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms