RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 KLHDC10Q6PID8 442 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 MBOAT1Q6ZNC8 495 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 RALGPS2Q86X27 583 aaPredicted RBP9.37□□□□□ -0.91
CUX1-206ENST00000437600 SP7Q8TDD2 431 aaPredicted RBP9.37□□□□□ -0.91
CUX1-206ENST00000437600 ING5Q8WYH8 240 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 SPAG4Q9NPE6 437 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 NLE1Q9NVX2 485 aaPredicted RBP9.37□□□□□ -0.91
CUX1-206ENST00000437600 COMMD8Q9NX08 183 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 CIDEBQ9UHD4 219 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 ZNHIT2Q9UHR6 403 aa9.37□□□□□ -0.91
CUX1-206ENST00000437600 MTCL1Q9Y4B5 1905 aaKnown RBP9.36□□□□□ -0.91
CUX1-206ENST00000437600 C15orf38-AP3S2A0A0A6YYH1 394 aa9.36□□□□□ -0.91
CUX1-206ENST00000437600 ILVBLA1L0T0 632 aa9.36□□□□□ -0.91
CUX1-206ENST00000437600 PLOD2O00469 737 aa9.36□□□□□ -0.91
CUX1-206ENST00000437600 TRIM38O00635 465 aa9.36□□□□□ -0.91
CUX1-206ENST00000437600 NME4O00746 187 aa9.36□□□□□ -0.91
CUX1-206ENST00000437600 ZNF189O75820 626 aaPredicted RBP9.36□□□□□ -0.91
CUX1-206ENST00000437600 SEC24DO94855 1032 aaPredicted RBP9.36□□□□□ -0.91
CUX1-206ENST00000437600 CR2P20023 1033 aa9.36□□□□□ -0.91
CUX1-206ENST00000437600 HTR6P50406 440 aa9.36□□□□□ -0.91
CUX1-206ENST00000437600 HK2P52789 917 aa9.36□□□□□ -0.91
CUX1-206ENST00000437600 STX1BP61266 288 aa9.36□□□□□ -0.91
CUX1-206ENST00000437600 ADGRE1Q14246 886 aa9.36□□□□□ -0.91
CUX1-206ENST00000437600 SQLEQ14534 574 aa9.36□□□□□ -0.91
CUX1-206ENST00000437600 ARPINQ7Z6K5 226 aa9.36□□□□□ -0.91
CUX1-206ENST00000437600 BBS5Q8N3I7 341 aa9.36□□□□□ -0.91
CUX1-206ENST00000437600 GABPB2Q8TAK5 448 aaPredicted RBP9.36□□□□□ -0.91
CUX1-206ENST00000437600 TRMT2BQ96GJ1 504 aaKnown RBP9.36□□□□□ -0.91
CUX1-206ENST00000437600 CIPCQ9C0C6 399 aa9.36□□□□□ -0.91
CUX1-206ENST00000437600 MTIF3Q9H2K0 278 aaKnown RBP9.36□□□□□ -0.91
CUX1-206ENST00000437600 SOX17Q9H6I2 414 aaPredicted RBP9.36□□□□□ -0.91
CUX1-206ENST00000437600 FNIP2Q9P278 1114 aa9.36□□□□□ -0.91
CUX1-206ENST00000437600 PRSS21Q9Y6M0 314 aa9.36□□□□□ -0.91
CUX1-206ENST00000437600 PKMP14618 531 aaKnown RBP9.36□□□□□ -0.91
CUX1-206ENST00000437600 CD70P32970 193 aa9.36□□□□□ -0.91
CUX1-206ENST00000437600 CTSOP43234 321 aaPredicted RBP9.36□□□□□ -0.91
CUX1-206ENST00000437600 ACVR1Q04771 509 aa9.36□□□□□ -0.91
CUX1-206ENST00000437600 RAD51Q06609 339 aa9.36□□□□□ -0.91
CUX1-206ENST00000437600 MAP7D1Q3KQU3 841 aa9.36□□□□□ -0.91
CUX1-206ENST00000437600 C6orf10Q5SRN2 563 aa9.36□□□□□ -0.91
CUX1-206ENST00000437600 ANKS6Q68DC2 871 aa9.36□□□□□ -0.91
CUX1-206ENST00000437600 RAB44Q7Z6P3 723 aaPredicted RBP9.36□□□□□ -0.91
CUX1-206ENST00000437600 ADGRG6Q86SQ4 1221 aa9.36□□□□□ -0.91
CUX1-206ENST00000437600 LCA5Q86VQ0 697 aa9.36□□□□□ -0.91
CUX1-206ENST00000437600 SLC22A15Q8IZD6 547 aa9.36□□□□□ -0.91
CUX1-206ENST00000437600 C12orf76Q8N812 135 aaPredicted RBP9.36□□□□□ -0.91
CUX1-206ENST00000437600 TMEM102Q8N9M5 508 aaPredicted RBP9.36□□□□□ -0.91
CUX1-206ENST00000437600 C17orf50Q8WW18 174 aa9.36□□□□□ -0.91
CUX1-206ENST00000437600 PPP1R2P1Q96PQ5 205 aa9.36□□□□□ -0.91
CUX1-206ENST00000437600 NSUN3Q9H649 340 aaKnown RBP9.36□□□□□ -0.91
CUX1-206ENST00000437600 FARSBQ9NSD9 589 aaKnown RBP9.36□□□□□ -0.91
CUX1-206ENST00000437600 LZTS1Q9Y250 596 aa9.36□□□□□ -0.91
CUX1-206ENST00000437600 ANKRD36A6QL64 1941 aa9.35□□□□□ -0.91
CUX1-206ENST00000437600 A0A1W2PQ67 120 aa9.35□□□□□ -0.91
CUX1-206ENST00000437600 UPK3BL1B0FP48 263 aa9.35□□□□□ -0.91
CUX1-206ENST00000437600 UPK3BL2E5RIL1 263 aa9.35□□□□□ -0.91
CUX1-206ENST00000437600 ANGPT2O15123 496 aa9.35□□□□□ -0.91
CUX1-206ENST00000437600 TSPAN12O95859 305 aa9.35□□□□□ -0.91
CUX1-206ENST00000437600 EPOP01588 193 aa9.35□□□□□ -0.91
CUX1-206ENST00000437600 ATP6V1B2P21281 511 aa9.35□□□□□ -0.91
CUX1-206ENST00000437600 OXTRP30559 389 aa9.35□□□□□ -0.91
CUX1-206ENST00000437600 DGKQP52824 942 aa9.35□□□□□ -0.91
CUX1-206ENST00000437600 PPP1R8Q12972 351 aaKnown RBP9.35□□□□□ -0.91
CUX1-206ENST00000437600 TIGD2Q4W5G0 525 aa9.35□□□□□ -0.91
CUX1-206ENST00000437600 RARS2Q5T160 578 aaKnown RBP9.35□□□□□ -0.91
CUX1-206ENST00000437600 PPP2R2DQ66LE6 453 aa9.35□□□□□ -0.91
CUX1-206ENST00000437600 UGT2A3Q6UWM9 527 aa9.35□□□□□ -0.91
CUX1-206ENST00000437600 TSPAN33Q86UF1 283 aa9.35□□□□□ -0.91
CUX1-206ENST00000437600 TMC8Q8IU68 726 aa9.35□□□□□ -0.91
CUX1-206ENST00000437600 SLC15A3Q8IY34 581 aa9.35□□□□□ -0.91
CUX1-206ENST00000437600 AFAP1L2Q8N4X5 818 aa9.35□□□□□ -0.91
CUX1-206ENST00000437600 NAT16Q8N8M0 369 aa9.35□□□□□ -0.91
CUX1-206ENST00000437600 PHOSPHO2Q8TCD6 241 aa9.35□□□□□ -0.91
CUX1-206ENST00000437600 LKAAEAR1Q8TD35 194 aa9.35□□□□□ -0.91
CUX1-206ENST00000437600 OVCA2Q8WZ82 227 aa9.35□□□□□ -0.91
CUX1-206ENST00000437600 KIAA1191Q96A73 305 aa9.35□□□□□ -0.91
CUX1-206ENST00000437600 ASB9Q96DX5 294 aa9.35□□□□□ -0.91
CUX1-206ENST00000437600 L3HYPDHQ96EM0 354 aa9.35□□□□□ -0.91
CUX1-206ENST00000437600 NR1H4Q96RI1 486 aaPredicted RBP9.35□□□□□ -0.91
CUX1-206ENST00000437600 SEPHS2Q99611 448 aa9.35□□□□□ -0.91
CUX1-206ENST00000437600 SLC25A23Q9BV35 468 aa9.35□□□□□ -0.91
CUX1-206ENST00000437600 GRIP2Q9C0E4 1043 aa9.35□□□□□ -0.91
CUX1-206ENST00000437600 MBD1Q9UIS9 605 aaPredicted RBP9.35□□□□□ -0.91
CUX1-206ENST00000437600 TRMT6Q9UJA5 497 aaKnown RBP9.35□□□□□ -0.91
CUX1-206ENST00000437600 TBC1D30Q9Y2I9 924 aa9.35□□□□□ -0.91
CUX1-206ENST00000437600 NDUFAF1Q9Y375 327 aa9.35□□□□□ -0.91
CUX1-206ENST00000437600 OBSL1O75147 1896 aa9.35□□□□□ -0.91
CUX1-206ENST00000437600 SNX2O60749 519 aa9.35□□□□□ -0.91
CUX1-206ENST00000437600 IL2P60568 153 aa9.35□□□□□ -0.91
CUX1-206ENST00000437600 TEAD2Q15562 447 aa9.35□□□□□ -0.91
CUX1-206ENST00000437600 TAF1AQ15573 450 aaPredicted RBP9.35□□□□□ -0.91
CUX1-206ENST00000437600 TGFBIQ15582 683 aa9.35□□□□□ -0.91
CUX1-206ENST00000437600 POM121L1PQ3SYA9 428 aa9.35□□□□□ -0.91
CUX1-206ENST00000437600 C5orf22Q49AR2 442 aa9.35□□□□□ -0.91
CUX1-206ENST00000437600 HMBOX1Q6NT76 420 aa9.35□□□□□ -0.91
CUX1-206ENST00000437600 SETD3Q86TU7 594 aaPredicted RBP9.35□□□□□ -0.91
CUX1-206ENST00000437600 ITIH5Q86UX2 942 aa9.35□□□□□ -0.91
CUX1-206ENST00000437600 GPSM1Q86YR5 675 aa9.35□□□□□ -0.91
CUX1-206ENST00000437600 ADGRG2Q8IZP9 1017 aa9.35□□□□□ -0.91
CUX1-206ENST00000437600 MRPL43Q8N983 215 aaKnown RBP9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms