RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 SMYD2Q9NRG4 433 aa9.96□□□□□ -0.82
CD44-207ENST00000425428 DNAJC28Q9NX36 388 aa9.96□□□□□ -0.82
CD44-207ENST00000425428 CNOT6Q9ULM6 557 aaKnown RBP9.96□□□□□ -0.82
CD44-207ENST00000425428 SLC17A4Q9Y2C5 497 aa9.96□□□□□ -0.82
CD44-207ENST00000425428 CA5BQ9Y2D0 317 aa9.96□□□□□ -0.82
CD44-207ENST00000425428 PSAT1Q9Y617 370 aa9.96□□□□□ -0.82
CD44-207ENST00000425428 FANCMQ8IYD8 2048 aa9.95□□□□□ -0.82
CD44-207ENST00000425428 A0A087X1B8 175 aa9.95□□□□□ -0.82
CD44-207ENST00000425428 C17orf113A0A1B0GUU1 675 aa9.95□□□□□ -0.82
CD44-207ENST00000425428 TRIM49D1C9J1S8 452 aa9.95□□□□□ -0.82
CD44-207ENST00000425428 IFRD1O00458 451 aaPredicted RBP9.95□□□□□ -0.82
CD44-207ENST00000425428 LIN7AO14910 233 aaPredicted RBP9.95□□□□□ -0.82
CD44-207ENST00000425428 YKT6O15498 198 aa9.95□□□□□ -0.82
CD44-207ENST00000425428 KDM1AO60341 852 aa9.95□□□□□ -0.82
CD44-207ENST00000425428 PIAS1O75925 651 aa9.95□□□□□ -0.82
CD44-207ENST00000425428 CBSLP0DN79 551 aa9.95□□□□□ -0.82
CD44-207ENST00000425428 PBLDP30039 288 aaPredicted RBP9.95□□□□□ -0.82
CD44-207ENST00000425428 CBSP35520 551 aa9.95□□□□□ -0.82
CD44-207ENST00000425428 HALP42357 657 aa9.95□□□□□ -0.82
CD44-207ENST00000425428 CSNK1EP49674 416 aaKnown RBP9.95□□□□□ -0.82
CD44-207ENST00000425428 IL2P60568 153 aa9.95□□□□□ -0.82
CD44-207ENST00000425428 RAB10P61026 200 aa9.95□□□□□ -0.82
CD44-207ENST00000425428 BIRC2Q13490 618 aa9.95□□□□□ -0.82
CD44-207ENST00000425428 BOP1Q14137 746 aaKnown RBP9.95□□□□□ -0.82
CD44-207ENST00000425428 ELOCQ15369 112 aa9.95□□□□□ -0.82
CD44-207ENST00000425428 PLEKHS1Q5SXH7 462 aa9.95□□□□□ -0.82
CD44-207ENST00000425428 TTC23LQ6PF05 361 aa9.95□□□□□ -0.82
CD44-207ENST00000425428 CHST15Q7LFX5 561 aaPredicted RBP9.95□□□□□ -0.82
CD44-207ENST00000425428 SDR16C5Q8N3Y7 309 aa9.95□□□□□ -0.82
CD44-207ENST00000425428 FSTL5Q8N475 847 aaPredicted RBP9.95□□□□□ -0.82
CD44-207ENST00000425428 CLDN19Q8N6F1 224 aa9.95□□□□□ -0.82
CD44-207ENST00000425428 OR2W6PQ8NHA6 318 aa9.95□□□□□ -0.82
CD44-207ENST00000425428 ACMSDQ8TDX5 336 aa9.95□□□□□ -0.82
CD44-207ENST00000425428 DCAKDQ8WVC6 231 aa9.95□□□□□ -0.82
CD44-207ENST00000425428 BOCQ9BWV1 1114 aa9.95□□□□□ -0.82
CD44-207ENST00000425428 P2RY12Q9H244 342 aa9.95□□□□□ -0.82
CD44-207ENST00000425428 OSGEPL1Q9H4B0 414 aa9.95□□□□□ -0.82
CD44-207ENST00000425428 EBF2Q9HAK2 575 aa9.95□□□□□ -0.82
CD44-207ENST00000425428 KLHL42Q9P2K6 505 aa9.95□□□□□ -0.82
CD44-207ENST00000425428 SLC17A6Q9P2U8 582 aa9.95□□□□□ -0.82
CD44-207ENST00000425428 SPASTQ9UBP0 616 aa9.95□□□□□ -0.82
CD44-207ENST00000425428 PILRBQ9UKJ0 227 aa9.95□□□□□ -0.82
CD44-207ENST00000425428 ACSL5Q9ULC5 683 aa9.95□□□□□ -0.82
CD44-207ENST00000425428 SUFUQ9UMX1 484 aa9.95□□□□□ -0.82
CD44-207ENST00000425428 SLC6A14Q9UN76 642 aa9.95□□□□□ -0.82
CD44-207ENST00000425428 ANKRD6Q9Y2G4 727 aa9.95□□□□□ -0.82
CD44-207ENST00000425428 ACOT9Q9Y305 439 aa9.95□□□□□ -0.82
CD44-207ENST00000425428 ZFC3H1O60293 1989 aaKnown RBP9.94□□□□□ -0.82
CD44-207ENST00000425428 TP53BP1Q12888 1972 aaPredicted RBP9.94□□□□□ -0.82
CD44-207ENST00000425428 NEMP2A6NFY4 417 aa9.94□□□□□ -0.82
CD44-207ENST00000425428 MGAT4DA6NG13 374 aa9.94□□□□□ -0.82
CD44-207ENST00000425428 KHNYNO15037 678 aaKnown RBP9.94□□□□□ -0.82
CD44-207ENST00000425428 POP7O75817 140 aaKnown RBP9.94□□□□□ -0.82
CD44-207ENST00000425428 CER1O95813 267 aa9.94□□□□□ -0.82
CD44-207ENST00000425428 RPN2P04844 631 aa9.94□□□□□ -0.82
CD44-207ENST00000425428 CEACAM5P06731 702 aa9.94□□□□□ -0.82
CD44-207ENST00000425428 ENO3P13929 434 aaPredicted RBP9.94□□□□□ -0.82
CD44-207ENST00000425428 JUNDP17535 347 aa9.94□□□□□ -0.82
CD44-207ENST00000425428 ITGB6P18564 788 aa9.94□□□□□ -0.82
CD44-207ENST00000425428 CD9P21926 228 aa9.94□□□□□ -0.82
CD44-207ENST00000425428 IDSP22304 550 aa9.94□□□□□ -0.82
CD44-207ENST00000425428 CCT5P48643 541 aa9.94□□□□□ -0.82
CD44-207ENST00000425428 HK3P52790 923 aa9.94□□□□□ -0.82
CD44-207ENST00000425428 ZNF844Q08AG5 666 aa9.94□□□□□ -0.82
CD44-207ENST00000425428 KRT33BQ14525 404 aa9.94□□□□□ -0.82
CD44-207ENST00000425428 FAM83EQ2M2I3 478 aa9.94□□□□□ -0.82
CD44-207ENST00000425428 ZNF648Q5T619 568 aaPredicted RBP9.94□□□□□ -0.82
CD44-207ENST00000425428 AGAP9Q5VTM2 703 aa9.94□□□□□ -0.82
CD44-207ENST00000425428 GKN2Q86XP6 184 aa9.94□□□□□ -0.82
CD44-207ENST00000425428 CFAP206Q8IYR0 622 aa9.94□□□□□ -0.82
CD44-207ENST00000425428 MYO1HQ8N1T3 1032 aa9.94□□□□□ -0.82
CD44-207ENST00000425428 DCLK2Q8N568 766 aa9.94□□□□□ -0.82
CD44-207ENST00000425428 ZBTB2Q8N680 514 aa9.94□□□□□ -0.82
CD44-207ENST00000425428 HM13Q8TCT9 377 aa9.94□□□□□ -0.82
CD44-207ENST00000425428 ALKBH8Q96BT7 664 aaKnown RBP9.94□□□□□ -0.82
CD44-207ENST00000425428 NDNQ99608 321 aa9.94□□□□□ -0.82
CD44-207ENST00000425428 TIMM29Q9BSF4 260 aa9.94□□□□□ -0.82
CD44-207ENST00000425428 TRIM54Q9BYV2 358 aa9.94□□□□□ -0.82
CD44-207ENST00000425428 VPS11Q9H270 941 aa9.94□□□□□ -0.82
CD44-207ENST00000425428 ERVMER34-1Q9H9K5 563 aa9.94□□□□□ -0.82
CD44-207ENST00000425428 TRNAU1APQ9NX07 287 aaKnown RBP9.94□□□□□ -0.82
CD44-207ENST00000425428 APOBEC3BQ9UH17 382 aaKnown RBP9.94□□□□□ -0.82
CD44-207ENST00000425428 SMG5Q9UPR3 1016 aaKnown RBP9.94□□□□□ -0.82
CD44-207ENST00000425428 OAS3Q9Y6K5 1087 aaKnown RBP9.94□□□□□ -0.82
CD44-207ENST00000425428 DGKBQ9Y6T7 804 aa9.94□□□□□ -0.82
CD44-207ENST00000425428 R4GN57 208 aa9.94□□□□□ -0.82
CD44-207ENST00000425428 ATXN2Q99700 1313 aaKnown RBP9.94□□□□□ -0.82
CD44-207ENST00000425428 A0A0C4DFX4 3053 aa9.94□□□□□ -0.82
CD44-207ENST00000425428 TNRC6BQ9UPQ9 1833 aaKnown RBP9.94□□□□□ -0.82
CD44-207ENST00000425428 ZNF318Q5VUA4 2279 aa9.94□□□□□ -0.82
CD44-207ENST00000425428 TMEM202A6NGA9 273 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 EIF3FO00303 357 aaPredicted RBP9.93□□□□□ -0.82
CD44-207ENST00000425428 CHUKO15111 745 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 FAM155BO75949 473 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 EPN2O95208 641 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 SLC35G4P0C7Q5 338 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 ACP5P13686 325 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 NXPH1P58417 271 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 HSPA14Q0VDF9 509 aa9.93□□□□□ -0.82
CD44-207ENST00000425428 RPA4Q13156 261 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms