RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 PGS1Q32NB8 556 aa13.21□□□□□ -0.29
VPS54-203ENST00000409558 C6orf136Q5SQH8 315 aa13.21□□□□□ -0.29
VPS54-203ENST00000409558 LHX8Q68G74 356 aa13.21□□□□□ -0.29
VPS54-203ENST00000409558 ADGRG6Q86SQ4 1221 aa13.21□□□□□ -0.29
VPS54-203ENST00000409558 STK32CQ86UX6 486 aa13.21□□□□□ -0.29
VPS54-203ENST00000409558 SLC22A17Q8WUG5 538 aa13.21□□□□□ -0.29
VPS54-203ENST00000409558 ABTB1Q969K4 478 aaPredicted RBP13.21□□□□□ -0.29
VPS54-203ENST00000409558 GID8Q9NWU2 228 aa13.21□□□□□ -0.29
VPS54-203ENST00000409558 SLCO3A1Q9UIG8 710 aa13.21□□□□□ -0.29
VPS54-203ENST00000409558 PCTPQ9UKL6 214 aa13.21□□□□□ -0.29
VPS54-203ENST00000409558 UTS2RQ9UKP6 389 aa13.21□□□□□ -0.29
VPS54-203ENST00000409558 MYO16Q9Y6X6 1858 aa13.21□□□□□ -0.29
VPS54-203ENST00000409558 OR2AG2A6NM03 316 aa13.21□□□□□ -0.29
VPS54-203ENST00000409558 PRMT5O14744 637 aaPredicted RBP13.21□□□□□ -0.29
VPS54-203ENST00000409558 NOBOXO60393 691 aa13.21□□□□□ -0.29
VPS54-203ENST00000409558 ZNF189O75820 626 aaPredicted RBP13.21□□□□□ -0.29
VPS54-203ENST00000409558 RSL1D1O76021 490 aaKnown RBP13.21□□□□□ -0.29
VPS54-203ENST00000409558 ZNF26P17031 533 aaPredicted RBP13.21□□□□□ -0.29
VPS54-203ENST00000409558 PRKACGP22612 351 aa13.21□□□□□ -0.29
VPS54-203ENST00000409558 HTR7P34969 479 aa13.21□□□□□ -0.29
VPS54-203ENST00000409558 TLE2Q04725 743 aa13.21□□□□□ -0.29
VPS54-203ENST00000409558 CBX2Q14781 532 aaPredicted RBP13.21□□□□□ -0.29
VPS54-203ENST00000409558 BEND5Q7L4P6 421 aa13.21□□□□□ -0.29
VPS54-203ENST00000409558 OR10A6Q8NH74 314 aa13.21□□□□□ -0.29
VPS54-203ENST00000409558 MYO19Q96H55 970 aa13.21□□□□□ -0.29
VPS54-203ENST00000409558 TFB2MQ9H5Q4 396 aaKnown RBP13.21□□□□□ -0.29
VPS54-203ENST00000409558 PFDN6O15212 129 aa13.21□□□□□ -0.3
VPS54-203ENST00000409558 INPPL1O15357 1258 aa13.21□□□□□ -0.3
VPS54-203ENST00000409558 SMIM18P0DKX4 95 aa13.21□□□□□ -0.3
VPS54-203ENST00000409558 FASP25445 335 aa13.21□□□□□ -0.3
VPS54-203ENST00000409558 HOXD10P28358 340 aa13.21□□□□□ -0.3
VPS54-203ENST00000409558 CD70P32970 193 aa13.21□□□□□ -0.3
VPS54-203ENST00000409558 IRX1P78414 480 aaPredicted RBP13.21□□□□□ -0.3
VPS54-203ENST00000409558 INPP5AQ14642 412 aa13.21□□□□□ -0.3
VPS54-203ENST00000409558 FAM174BQ3ZCQ3 159 aa13.21□□□□□ -0.3
VPS54-203ENST00000409558 SFRP1Q8N474 314 aa13.21□□□□□ -0.3
VPS54-203ENST00000409558 TRIB3Q96RU7 358 aa13.21□□□□□ -0.3
VPS54-203ENST00000409558 ACTR8Q9H981 624 aa13.21□□□□□ -0.3
VPS54-203ENST00000409558 ABCB8Q9NUT2 735 aa13.21□□□□□ -0.3
VPS54-203ENST00000409558 AASSQ9UDR5 926 aa13.21□□□□□ -0.3
VPS54-203ENST00000409558 LCHNA4D1U4 455 aa13.2□□□□□ -0.3
VPS54-203ENST00000409558 HMGA1P17096 107 aaKnown RBP13.2□□□□□ -0.3
VPS54-203ENST00000409558 PIGFQ07326 219 aa13.2□□□□□ -0.3
VPS54-203ENST00000409558 DEFB115Q30KQ5 88 aa13.2□□□□□ -0.3
VPS54-203ENST00000409558 CWF19L1Q69YN2 538 aaKnown RBP13.2□□□□□ -0.3
VPS54-203ENST00000409558 ANGPTL8Q6UXH0 198 aa13.2□□□□□ -0.3
VPS54-203ENST00000409558 SCML4Q8N228 414 aa13.2□□□□□ -0.3
VPS54-203ENST00000409558 GALNT15Q8N3T1 639 aa13.2□□□□□ -0.3
VPS54-203ENST00000409558 SCAMP4Q969E2 229 aa13.2□□□□□ -0.3
VPS54-203ENST00000409558 ITCHQ96J02 903 aa13.2□□□□□ -0.3
VPS54-203ENST00000409558 HIC2Q96JB3 615 aa13.2□□□□□ -0.3
VPS54-203ENST00000409558 TRMOQ9BU70 441 aa13.2□□□□□ -0.3
VPS54-203ENST00000409558 EBPLQ9BY08 206 aa13.2□□□□□ -0.3
VPS54-203ENST00000409558 LIMD1Q9UGP4 676 aa13.2□□□□□ -0.3
VPS54-203ENST00000409558 FFAR2O15552 330 aa13.2□□□□□ -0.3
VPS54-203ENST00000409558 HTRA2O43464 458 aaPredicted RBP13.2□□□□□ -0.3
VPS54-203ENST00000409558 AHCYL1O43865 530 aa13.2□□□□□ -0.3
VPS54-203ENST00000409558 DFNA5O60443 496 aa13.2□□□□□ -0.3
VPS54-203ENST00000409558 FESP07332 822 aa13.2□□□□□ -0.3
VPS54-203ENST00000409558 DEFB103AP81534 67 aa13.2□□□□□ -0.3
VPS54-203ENST00000409558 GTF2H2Q13888 395 aa13.2□□□□□ -0.3
VPS54-203ENST00000409558 TCEA2Q15560 299 aa13.2□□□□□ -0.3
VPS54-203ENST00000409558 NANOGP8Q6NSW7 305 aa13.2□□□□□ -0.3
VPS54-203ENST00000409558 GTF2H2CQ6P1K8 395 aa13.2□□□□□ -0.3
VPS54-203ENST00000409558 GOLGA7Q7Z5G4 137 aa13.2□□□□□ -0.3
VPS54-203ENST00000409558 CLVS1Q8IUQ0 354 aaPredicted RBP13.2□□□□□ -0.3
VPS54-203ENST00000409558 KIAA2013Q8IYS2 634 aa13.2□□□□□ -0.3
VPS54-203ENST00000409558 C2orf73Q8N5S3 287 aaPredicted RBP13.2□□□□□ -0.3
VPS54-203ENST00000409558 DLG3Q92796 817 aa13.2□□□□□ -0.3
VPS54-203ENST00000409558 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.2□□□□□ -0.34e-6■■■■■ 48.1
VPS54-203ENST00000409558 L3HYPDHQ96EM0 354 aa13.2□□□□□ -0.3
VPS54-203ENST00000409558 NANOGQ9H9S0 305 aa13.2□□□□□ -0.3
VPS54-203ENST00000409558 HCFC1R1Q9NWW0 138 aa13.2□□□□□ -0.3
VPS54-203ENST00000409558 ARL15Q9NXU5 204 aa13.2□□□□□ -0.3
VPS54-203ENST00000409558 MBD1Q9UIS9 605 aaPredicted RBP13.2□□□□□ -0.3
VPS54-203ENST00000409558 H3BNC9 293 aa13.2□□□□□ -0.3
VPS54-203ENST00000409558 NRG2O14511 850 aaPredicted RBP13.2□□□□□ -0.3
VPS54-203ENST00000409558 CCL16O15467 120 aa13.2□□□□□ -0.3
VPS54-203ENST00000409558 GMNNO75496 209 aa13.2□□□□□ -0.3
VPS54-203ENST00000409558 DIRAS1O95057 198 aa13.2□□□□□ -0.3
VPS54-203ENST00000409558 SNAP29O95721 258 aa13.2□□□□□ -0.3
VPS54-203ENST00000409558 RPL5P46777 297 aaKnown RBP13.2□□□□□ -0.3
VPS54-203ENST00000409558 HERC3Q15034 1050 aa13.2□□□□□ -0.3
VPS54-203ENST00000409558 NKAPQ8N5F7 415 aaKnown RBP13.2□□□□□ -0.3
VPS54-203ENST00000409558 RMND5BQ96G75 393 aaPredicted RBP13.2□□□□□ -0.3
VPS54-203ENST00000409558 CCDC90BQ9GZT6 254 aa13.2□□□□□ -0.3
VPS54-203ENST00000409558 TMEM181Q9P2C4 612 aa13.2□□□□□ -0.3
VPS54-203ENST00000409558 FXYD1O00168 92 aa13.2□□□□□ -0.3
VPS54-203ENST00000409558 CLOCKO15516 846 aa13.2□□□□□ -0.3
VPS54-203ENST00000409558 ESRRBO95718 433 aa13.2□□□□□ -0.3
VPS54-203ENST00000409558 CD160O95971 181 aa13.2□□□□□ -0.3
VPS54-203ENST00000409558 HNF1BP35680 557 aa13.2□□□□□ -0.3
VPS54-203ENST00000409558 TM4SF4P48230 202 aa13.2□□□□□ -0.3
VPS54-203ENST00000409558 POLD2P49005 469 aa13.2□□□□□ -0.3
VPS54-203ENST00000409558 FAM189BP81408 668 aa13.2□□□□□ -0.3
VPS54-203ENST00000409558 GLYATQ6IB77 296 aa13.2□□□□□ -0.3
VPS54-203ENST00000409558 ZNF461Q8TAF7 563 aa13.2□□□□□ -0.3
VPS54-203ENST00000409558 SMOXQ9NWM0 555 aa13.2□□□□□ -0.3
VPS54-203ENST00000409558 SUCOQ9UBS9 1254 aaKnown RBP13.2□□□□□ -0.3
VPS54-203ENST00000409558 SPEGQ15772 3267 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms