RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 LEFTY1O75610 366 aa10.99□□□□□ -0.65
TCOF1-203ENST00000394269 POP4O95707 220 aaKnown RBP10.99□□□□□ -0.65
TCOF1-203ENST00000394269 LBPP18428 481 aa10.99□□□□□ -0.65
TCOF1-203ENST00000394269 PEX2P28328 305 aa10.99□□□□□ -0.65
TCOF1-203ENST00000394269 PRDX6P30041 224 aa10.99□□□□□ -0.65
TCOF1-203ENST00000394269 SLC7A2P52569 658 aa10.99□□□□□ -0.65
TCOF1-203ENST00000394269 SLC44A4Q53GD3 710 aa10.99□□□□□ -0.65
TCOF1-203ENST00000394269 TCEAL5Q5H9L2 206 aa10.99□□□□□ -0.65
TCOF1-203ENST00000394269 TMEM215Q68D42 235 aa10.99□□□□□ -0.65
TCOF1-203ENST00000394269 CERS6Q6ZMG9 384 aa10.99□□□□□ -0.65
TCOF1-203ENST00000394269 DNAJB14Q8TBM8 379 aa10.99□□□□□ -0.65
TCOF1-203ENST00000394269 GDPD5Q8WTR4 605 aa10.99□□□□□ -0.65
TCOF1-203ENST00000394269 SEMA6AQ9H2E6 1030 aa10.99□□□□□ -0.65
TCOF1-203ENST00000394269 POPDC3Q9HBV1 291 aa10.99□□□□□ -0.65
TCOF1-203ENST00000394269 EGFL7Q9UHF1 273 aa10.99□□□□□ -0.65
TCOF1-203ENST00000394269 FBP2O00757 339 aa10.98□□□□□ -0.65
TCOF1-203ENST00000394269 INPP4BO15327 924 aa10.98□□□□□ -0.65
TCOF1-203ENST00000394269 LINC00271P0C7V0 271 aa10.98□□□□□ -0.65
TCOF1-203ENST00000394269 HLA-EP13747 358 aa10.98□□□□□ -0.65
TCOF1-203ENST00000394269 CEBPBP17676 345 aa10.98□□□□□ -0.65
TCOF1-203ENST00000394269 PGAM4Q8N0Y7 254 aa10.98□□□□□ -0.65
TCOF1-203ENST00000394269 MIER2Q8N344 545 aa10.98□□□□□ -0.65
TCOF1-203ENST00000394269 CPXM2Q8N436 756 aa10.98□□□□□ -0.65
TCOF1-203ENST00000394269 GALNT4Q8N4A0 578 aa10.98□□□□□ -0.65
TCOF1-203ENST00000394269 SCRN2Q96FV2 425 aa10.98□□□□□ -0.65
TCOF1-203ENST00000394269 WRAP53Q9BUR4 548 aaKnown RBP10.98□□□□□ -0.65
TCOF1-203ENST00000394269 EBF3Q9H4W6 596 aa10.98□□□□□ -0.65
TCOF1-203ENST00000394269 CACNA2D2Q9NY47 1150 aa10.98□□□□□ -0.65
TCOF1-203ENST00000394269 STK39Q9UEW8 545 aa10.98□□□□□ -0.65
TCOF1-203ENST00000394269 ZNF225Q9UK10 706 aa10.98□□□□□ -0.65
TCOF1-203ENST00000394269 PCTPQ9UKL6 214 aa10.98□□□□□ -0.65
TCOF1-203ENST00000394269 LRRC42Q9Y546 428 aa10.98□□□□□ -0.65
TCOF1-203ENST00000394269 CAPN8A6NHC0 703 aa10.98□□□□□ -0.65
TCOF1-203ENST00000394269 GAPDHSO14556 408 aaPredicted RBP10.98□□□□□ -0.65
TCOF1-203ENST00000394269 HTRA2O43464 458 aaPredicted RBP10.98□□□□□ -0.65
TCOF1-203ENST00000394269 FKBP6O75344 327 aa10.98□□□□□ -0.65
TCOF1-203ENST00000394269 CA3P07451 260 aa10.98□□□□□ -0.65
TCOF1-203ENST00000394269 ZCCHC18P0CG32 403 aa10.98□□□□□ -0.65
TCOF1-203ENST00000394269 ACRV1P26436 265 aa10.98□□□□□ -0.65
TCOF1-203ENST00000394269 HMOX2P30519 316 aa10.98□□□□□ -0.65
TCOF1-203ENST00000394269 ETV3P41162 512 aa10.98□□□□□ -0.65
TCOF1-203ENST00000394269 HTR6P50406 440 aa10.98□□□□□ -0.65
TCOF1-203ENST00000394269 ERVPABLB-1P60509 514 aa10.98□□□□□ -0.65
TCOF1-203ENST00000394269 NR6A1Q15406 480 aa10.98□□□□□ -0.65
TCOF1-203ENST00000394269 GRAMD4Q6IC98 578 aa10.98□□□□□ -0.65
TCOF1-203ENST00000394269 RNF111Q6ZNA4 994 aa10.98□□□□□ -0.65
TCOF1-203ENST00000394269 TPRG1Q6ZUI0 275 aa10.98□□□□□ -0.65
TCOF1-203ENST00000394269 MILR1Q7Z6M3 343 aa10.98□□□□□ -0.65
TCOF1-203ENST00000394269 PELI3Q8N2H9 469 aa10.98□□□□□ -0.65
TCOF1-203ENST00000394269 ZBTB2Q8N680 514 aa10.98□□□□□ -0.65
TCOF1-203ENST00000394269 PPWD1Q96BP3 646 aaKnown RBP10.98□□□□□ -0.65
TCOF1-203ENST00000394269 ULK4Q96C45 1275 aa10.98□□□□□ -0.65
TCOF1-203ENST00000394269 PLK4O00444 970 aa10.97□□□□□ -0.65
TCOF1-203ENST00000394269 TPST1O60507 370 aa10.97□□□□□ -0.65
TCOF1-203ENST00000394269 XYLBO75191 536 aa10.97□□□□□ -0.65
TCOF1-203ENST00000394269 SH3BGRLO75368 114 aa10.97□□□□□ -0.65
TCOF1-203ENST00000394269 PBLDP30039 288 aaPredicted RBP10.97□□□□□ -0.65
TCOF1-203ENST00000394269 MAPK8P45983 427 aa10.97□□□□□ -0.65
TCOF1-203ENST00000394269 CCNG1P51959 295 aa10.97□□□□□ -0.65
TCOF1-203ENST00000394269 MESP2Q0VG99 397 aa10.97□□□□□ -0.65
TCOF1-203ENST00000394269 CPSF6Q16630 551 aaKnown RBP eCLIP10.97□□□□□ -0.65
TCOF1-203ENST00000394269 AAK1Q2M2I8 961 aa10.97□□□□□ -0.65
TCOF1-203ENST00000394269 MPP7Q5T2T1 576 aa10.97□□□□□ -0.65
TCOF1-203ENST00000394269 LETMD1Q6P1Q0 360 aa10.97□□□□□ -0.65
TCOF1-203ENST00000394269 SERPINA13PQ6UXR4 307 aa10.97□□□□□ -0.65
TCOF1-203ENST00000394269 DHDDSQ86SQ9 333 aa10.97□□□□□ -0.65
TCOF1-203ENST00000394269 FUNDC1Q8IVP5 155 aa10.97□□□□□ -0.65
TCOF1-203ENST00000394269 NXPE1Q8N323 547 aa10.97□□□□□ -0.65
TCOF1-203ENST00000394269 DLG3Q92796 817 aa10.97□□□□□ -0.65
TCOF1-203ENST00000394269 CLP1Q92989 425 aaKnown RBP10.97□□□□□ -0.65
TCOF1-203ENST00000394269 DCUN1D1Q96GG9 259 aa10.97□□□□□ -0.65
TCOF1-203ENST00000394269 TEX37Q96LM6 180 aa10.97□□□□□ -0.65
TCOF1-203ENST00000394269 ZNF184Q99676 751 aaPredicted RBP10.97□□□□□ -0.65
TCOF1-203ENST00000394269 SLC25A23Q9BV35 468 aa10.97□□□□□ -0.65
TCOF1-203ENST00000394269 FAM126AQ9BYI3 521 aaPredicted RBP10.97□□□□□ -0.65
TCOF1-203ENST00000394269 P2RY12Q9H244 342 aa10.97□□□□□ -0.65
TCOF1-203ENST00000394269 ZFP14Q9HCL3 533 aa10.97□□□□□ -0.65
TCOF1-203ENST00000394269 ARL15Q9NXU5 204 aa10.97□□□□□ -0.65
TCOF1-203ENST00000394269 ITM2BQ9Y287 266 aa10.97□□□□□ -0.65
TCOF1-203ENST00000394269 V9GYQ6 96 aa10.97□□□□□ -0.65
TCOF1-203ENST00000394269 F5P12259 2224 aa10.97□□□□□ -0.65
TCOF1-203ENST00000394269 EME2A4GXA9 379 aaPredicted RBP10.97□□□□□ -0.65
TCOF1-203ENST00000394269 LINC01553A4QN01 128 aa10.97□□□□□ -0.65
TCOF1-203ENST00000394269 PABPN1LA6NDY0 278 aaKnown RBP10.97□□□□□ -0.65
TCOF1-203ENST00000394269 ANTXRLA6NF34 631 aa10.97□□□□□ -0.65
TCOF1-203ENST00000394269 GFRA2O00451 464 aa10.97□□□□□ -0.65
TCOF1-203ENST00000394269 RAD51BO15315 384 aa10.97□□□□□ -0.65
TCOF1-203ENST00000394269 MOSPD3O75425 235 aa10.97□□□□□ -0.65
TCOF1-203ENST00000394269 ESRRBO95718 433 aa10.97□□□□□ -0.65
TCOF1-203ENST00000394269 DGKAP23743 735 aa10.97□□□□□ -0.65
TCOF1-203ENST00000394269 UFM1P61960 85 aa10.97□□□□□ -0.65
TCOF1-203ENST00000394269 HTRA4P83105 476 aaPredicted RBP10.97□□□□□ -0.65
TCOF1-203ENST00000394269 NFKB2Q00653 900 aa10.97□□□□□ -0.65
TCOF1-203ENST00000394269 MAPRE2Q15555 327 aa10.97□□□□□ -0.65
TCOF1-203ENST00000394269 GDPD4Q6W3E5 623 aa10.97□□□□□ -0.65
TCOF1-203ENST00000394269 OR4F6Q8NGB9 312 aa10.97□□□□□ -0.65
TCOF1-203ENST00000394269 OR2A12Q8NGT7 310 aa10.97□□□□□ -0.65
TCOF1-203ENST00000394269 SMG7Q92540 1137 aaKnown RBP10.97□□□□□ -0.65
TCOF1-203ENST00000394269 LRGUKQ96M69 825 aa10.97□□□□□ -0.65
TCOF1-203ENST00000394269 LRRC3BQ96PB8 259 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms