RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 AP1G1O43747 822 aa17.96■□□□□ 0.47
CCDC88C-203ENST00000389856 DLX3O60479 287 aa17.96■□□□□ 0.47
CCDC88C-203ENST00000389856 IPO13O94829 963 aaKnown RBP17.96■□□□□ 0.47
CCDC88C-203ENST00000389856 CBSLP0DN79 551 aa17.96■□□□□ 0.47
CCDC88C-203ENST00000389856 BMP1P13497 986 aa17.96■□□□□ 0.47
CCDC88C-203ENST00000389856 ADSLP30566 484 aaPredicted RBP17.96■□□□□ 0.47
CCDC88C-203ENST00000389856 CBSP35520 551 aa17.96■□□□□ 0.47
CCDC88C-203ENST00000389856 TIE1P35590 1138 aa17.96■□□□□ 0.47
CCDC88C-203ENST00000389856 CLCN7P51798 805 aa17.96■□□□□ 0.47
CCDC88C-203ENST00000389856 PGGT1BP53609 377 aa17.96■□□□□ 0.47
CCDC88C-203ENST00000389856 SEC13P55735 322 aa17.96■□□□□ 0.47
CCDC88C-203ENST00000389856 ARHGAP8P85298 464 aa17.96■□□□□ 0.47
CCDC88C-203ENST00000389856 NFKB2Q00653 900 aa17.96■□□□□ 0.47
CCDC88C-203ENST00000389856 SATB1Q01826 763 aa17.96■□□□□ 0.47
CCDC88C-203ENST00000389856 RCN2Q14257 317 aa17.96■□□□□ 0.47
CCDC88C-203ENST00000389856 FBXO43Q4G163 708 aa17.96■□□□□ 0.47
CCDC88C-203ENST00000389856 TMEM196Q5HYL7 178 aa17.96■□□□□ 0.47
CCDC88C-203ENST00000389856 GPRC6AQ5T6X5 926 aa17.96■□□□□ 0.47
CCDC88C-203ENST00000389856 SCUBE1Q8IWY4 988 aa17.96■□□□□ 0.47
CCDC88C-203ENST00000389856 AFAP1L2Q8N4X5 818 aa17.96■□□□□ 0.47
CCDC88C-203ENST00000389856 SIDT2Q8NBJ9 832 aaKnown RBP17.96■□□□□ 0.47
CCDC88C-203ENST00000389856 RBM15BQ8NDT2 890 aaKnown RBP17.96■□□□□ 0.47
CCDC88C-203ENST00000389856 DDHD1Q8NEL9 900 aa17.96■□□□□ 0.47
CCDC88C-203ENST00000389856 HLA-CQ95604 372 aa17.96■□□□□ 0.47
CCDC88C-203ENST00000389856 LINGO1Q96FE5 620 aa17.96■□□□□ 0.47
CCDC88C-203ENST00000389856 CNDP1Q96KN2 507 aa17.96■□□□□ 0.47
CCDC88C-203ENST00000389856 COQ10AQ96MF6 247 aa17.96■□□□□ 0.47
CCDC88C-203ENST00000389856 GABRG3Q99928 467 aa17.96■□□□□ 0.47
CCDC88C-203ENST00000389856 TRMOQ9BU70 441 aa17.96■□□□□ 0.47
CCDC88C-203ENST00000389856 WRAP53Q9BUR4 548 aaKnown RBP17.96■□□□□ 0.47
CCDC88C-203ENST00000389856 RIOK2Q9BVS4 552 aaKnown RBP17.96■□□□□ 0.47
CCDC88C-203ENST00000389856 EML4Q9HC35 981 aaKnown RBP17.96■□□□□ 0.47
CCDC88C-203ENST00000389856 LIMD1Q9UGP4 676 aa17.96■□□□□ 0.47
CCDC88C-203ENST00000389856 CD84Q9UIB8 345 aa17.96■□□□□ 0.47
CCDC88C-203ENST00000389856 HCN2Q9UL51 889 aa17.96■□□□□ 0.47
CCDC88C-203ENST00000389856 RNF112Q9ULX5 631 aa17.96■□□□□ 0.47
CCDC88C-203ENST00000389856 GPR39O43194 453 aa17.95■□□□□ 0.46
CCDC88C-203ENST00000389856 ZBTB14O43829 449 aa17.95■□□□□ 0.46
CCDC88C-203ENST00000389856 SLC25A14O95258 325 aaPredicted RBP17.95■□□□□ 0.46
CCDC88C-203ENST00000389856 SBK3P0C264 359 aa17.95■□□□□ 0.46
CCDC88C-203ENST00000389856 COPAP53621 1224 aa17.95■□□□□ 0.46
CCDC88C-203ENST00000389856 CREB5Q02930 508 aa17.95■□□□□ 0.46
CCDC88C-203ENST00000389856 PUS10Q3MIT2 529 aaKnown RBP17.95■□□□□ 0.46
CCDC88C-203ENST00000389856 ADAMTSL2Q86TH1 951 aa17.95■□□□□ 0.46
CCDC88C-203ENST00000389856 PHYKPLQ8IUZ5 450 aa17.95■□□□□ 0.46
CCDC88C-203ENST00000389856 MYO1HQ8N1T3 1032 aa17.95■□□□□ 0.46
CCDC88C-203ENST00000389856 ZBTB2Q8N680 514 aa17.95■□□□□ 0.46
CCDC88C-203ENST00000389856 NUS1Q96E22 293 aa17.95■□□□□ 0.46
CCDC88C-203ENST00000389856 ASB2Q96Q27 587 aa17.95■□□□□ 0.46
CCDC88C-203ENST00000389856 GATA5Q9BWX5 397 aaPredicted RBP17.95■□□□□ 0.46
CCDC88C-203ENST00000389856 ABCG8Q9H221 673 aa17.95■□□□□ 0.46
CCDC88C-203ENST00000389856 FBRSL1Q9HCM7 1045 aaKnown RBP17.95■□□□□ 0.46
CCDC88C-203ENST00000389856 LATS2Q9NRM7 1088 aa17.95■□□□□ 0.46
CCDC88C-203ENST00000389856 SCML1Q9UN30 329 aa17.95■□□□□ 0.46
CCDC88C-203ENST00000389856 COL4A2P08572 1712 aa17.95■□□□□ 0.46
CCDC88C-203ENST00000389856 PLXNB3Q9ULL4 1909 aa17.94■□□□□ 0.46
CCDC88C-203ENST00000389856 ENTPD5O75356 428 aa17.94■□□□□ 0.46
CCDC88C-203ENST00000389856 TRIM16O95361 564 aa17.94■□□□□ 0.46
CCDC88C-203ENST00000389856 FTH1P02794 183 aa17.94■□□□□ 0.46
CCDC88C-203ENST00000389856 ENO3P13929 434 aaPredicted RBP17.94■□□□□ 0.46
CCDC88C-203ENST00000389856 ATP1B2P14415 290 aaPredicted RBP17.94■□□□□ 0.46
CCDC88C-203ENST00000389856 P2RY2P41231 377 aa17.94■□□□□ 0.46
CCDC88C-203ENST00000389856 MXRA7P84157 204 aa17.94■□□□□ 0.46
CCDC88C-203ENST00000389856 CNTN1Q12860 1018 aa17.94■□□□□ 0.46
CCDC88C-203ENST00000389856 PON2Q15165 354 aa17.94■□□□□ 0.46
CCDC88C-203ENST00000389856 TXNDC11Q6PKC3 985 aa17.94■□□□□ 0.46
CCDC88C-203ENST00000389856 MAVSQ7Z434 540 aa17.94■□□□□ 0.46
CCDC88C-203ENST00000389856 BTN2A2Q8WVV5 523 aa17.94■□□□□ 0.46
CCDC88C-203ENST00000389856 GLYATL1Q969I3 302 aa17.94■□□□□ 0.46
CCDC88C-203ENST00000389856 FAM136AQ96C01 138 aa17.94■□□□□ 0.46
CCDC88C-203ENST00000389856 SGF29Q96ES7 293 aa17.94■□□□□ 0.46
CCDC88C-203ENST00000389856 CCDC28BQ9BUN5 200 aa17.94■□□□□ 0.46
CCDC88C-203ENST00000389856 BOCQ9BWV1 1114 aa17.94■□□□□ 0.46
CCDC88C-203ENST00000389856 STX18Q9P2W9 335 aaKnown RBP17.94■□□□□ 0.46
CCDC88C-203ENST00000389856 NKX1-2Q9UD57 310 aaPredicted RBP17.94■□□□□ 0.46
CCDC88C-203ENST00000389856 BTN3A1O00481 513 aa17.94■□□□□ 0.46
CCDC88C-203ENST00000389856 HDAC3O15379 428 aa17.94■□□□□ 0.46
CCDC88C-203ENST00000389856 PSMG1O95456 288 aa17.94■□□□□ 0.46
CCDC88C-203ENST00000389856 DNTTP04053 509 aa17.94■□□□□ 0.46
CCDC88C-203ENST00000389856 S100BP04271 92 aaPredicted RBP17.94■□□□□ 0.46
CCDC88C-203ENST00000389856 C6P13671 934 aa17.94■□□□□ 0.46
CCDC88C-203ENST00000389856 WASP42768 502 aa17.94■□□□□ 0.46
CCDC88C-203ENST00000389856 RPL14P50914 215 aaKnown RBP17.94■□□□□ 0.46
CCDC88C-203ENST00000389856 NAGLUP54802 743 aa17.94■□□□□ 0.46
CCDC88C-203ENST00000389856 DPTQ07507 201 aa17.94■□□□□ 0.46
CCDC88C-203ENST00000389856 CCDC6Q16204 474 aa17.94■□□□□ 0.46
CCDC88C-203ENST00000389856 CPNE9Q8IYJ1 553 aa17.94■□□□□ 0.46
CCDC88C-203ENST00000389856 CCNYL1Q8N7R7 359 aa17.94■□□□□ 0.46
CCDC88C-203ENST00000389856 SCAMP4Q969E2 229 aa17.94■□□□□ 0.46
CCDC88C-203ENST00000389856 UNKQ9C0B0 810 aaKnown RBP17.94■□□□□ 0.46
CCDC88C-203ENST00000389856 HEBP1Q9NRV9 189 aa17.94■□□□□ 0.46
CCDC88C-203ENST00000389856 ITM2BQ9Y287 266 aa17.94■□□□□ 0.46
CCDC88C-203ENST00000389856 FADS3Q9Y5Q0 445 aa17.94■□□□□ 0.46
CCDC88C-203ENST00000389856 BRWD1Q9NSI6 2320 aa17.93■□□□□ 0.46
CCDC88C-203ENST00000389856 GOLGA8QA0A0J9YX86 632 aa17.93■□□□□ 0.46
CCDC88C-203ENST00000389856 GOLGA8OA6NCC3 632 aa17.93■□□□□ 0.46
CCDC88C-203ENST00000389856 A8MT66 165 aa17.93■□□□□ 0.46
CCDC88C-203ENST00000389856 GOLGA8NF8WBI6 632 aa17.93■□□□□ 0.46
CCDC88C-203ENST00000389856 MATN2O00339 956 aa17.93■□□□□ 0.46
CCDC88C-203ENST00000389856 SNX2O60749 519 aa17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms