RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 ADAMDEC1O15204 470 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 OR5F1O95221 314 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 PEX6Q13608 980 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 HKDC1Q2TB90 917 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 FBXO48Q5FWF7 155 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 NAT8LQ8N9F0 302 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 OR7D4Q8NG98 312 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 AP2M1Q96CW1 435 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 TTLL2Q9BWV7 592 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 FAM83DQ9H4H8 585 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 DNAJB4Q9UDY4 337 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 WWP2O00308 870 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 PIP5K1BO14986 540 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 GRM6O15303 877 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 KERAO60938 352 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 FABP3P05413 133 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 UGT1A5P35504 534 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 RPS6KA3P51812 740 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 AP1S1P61966 158 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 IL10RBQ08334 325 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 RFWD3Q6PCD5 774 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 PAOXQ6QHF9 649 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 FAM131AQ6UXB0 335 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 IFNL1Q8IU54 200 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 ADGRG2Q8IZP9 1017 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 MAB21L3Q8N8X9 362 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 GLB1L3Q8NCI6 653 aaPredicted RBP11.31□□□□□ -0.6
PTPRF-203ENST00000372407 DEFB118Q96PH6 123 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 CFAP97Q9P2B7 532 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 SUCOQ9UBS9 1254 aaKnown RBP11.31□□□□□ -0.6
PTPRF-203ENST00000372407 ZNF222Q9UK12 451 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 YJEFN3A6XGL0 299 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 GTPBP1O00178 669 aaKnown RBP11.31□□□□□ -0.6
PTPRF-203ENST00000372407 PER2O15055 1255 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 OGNP20774 298 aaKnown RBP11.31□□□□□ -0.6
PTPRF-203ENST00000372407 MAGP20916 626 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 PTGER3P43115 390 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 OMPP47874 163 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 ADGRE1Q14246 886 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 CBX2Q14781 532 aaPredicted RBP11.31□□□□□ -0.6
PTPRF-203ENST00000372407 ZBTB6Q15916 424 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 KIAA1324Q6UXG2 1013 aaKnown RBP11.31□□□□□ -0.6
PTPRF-203ENST00000372407 AHSA2Q719I0 299 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 P2RY8Q86VZ1 359 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 GPR65Q8IYL9 337 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 CRYBG2Q8N1P7 616 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 SLAIN1Q8ND83 568 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 FERD3LQ96RJ6 166 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 DPEP3Q9H4B8 488 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 IMP3Q9NV31 184 aaKnown RBP11.31□□□□□ -0.6
PTPRF-203ENST00000372407 PDE10AQ9Y233 779 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 A0A0G2JLL6 359 aaPredicted RBP11.31□□□□□ -0.6
PTPRF-203ENST00000372407 CLDN25C9JDP6 229 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 H3BNH8 94 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 CACNB4O00305 520 aaPredicted RBP11.31□□□□□ -0.6
PTPRF-203ENST00000372407 INSIG1O15503 277 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 ELNP15502 786 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 KELP23276 732 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 GLUD2P49448 558 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 NDUFV1P49821 464 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 CLCNKBP51801 687 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 AQP4P55087 323 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 CHIT1Q13231 466 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 ALG11Q2TAA5 492 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 SLC25A24Q6NUK1 477 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 TMPRSS11AQ6ZMR5 421 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 PRRT2Q7Z6L0 340 aaPredicted RBP11.31□□□□□ -0.6
PTPRF-203ENST00000372407 ZSCAN2Q7Z7L9 614 aaPredicted RBP11.31□□□□□ -0.6
PTPRF-203ENST00000372407 AKAP14Q86UN6 197 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 CPNE8Q86YQ8 564 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 CPNE9Q8IYJ1 553 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 VANGL1Q8TAA9 524 aaPredicted RBP11.31□□□□□ -0.6
PTPRF-203ENST00000372407 EBF4Q9BQW3 602 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 IGFLR1Q9H665 355 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 TBC1D14Q9P2M4 693 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 FAM92AA1XBS5 289 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 IQCJ-SCHIP1C9J366 451 aaPredicted RBP11.31□□□□□ -0.6
PTPRF-203ENST00000372407 TBX10O75333 385 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 SLC25A12O75746 678 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 GOT2P00505 430 aaKnown RBP11.31□□□□□ -0.6
PTPRF-203ENST00000372407 LAMP2P13473 410 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 CTNNB1P35222 781 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 TGFBR2P37173 567 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 CDH4P55283 916 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 SNAPC1Q16533 368 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 SULT1C3Q6IMI6 304 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 CCDC80Q76M96 950 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 OR10A6Q8NH74 314 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 HTRA1Q92743 480 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 HPS1Q92902 700 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 RAD51AP1Q96B01 352 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 SNX27Q96L92 541 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 AKAP7Q9P0M2 348 aaPredicted RBP11.31□□□□□ -0.6
PTPRF-203ENST00000372407 AJAP1Q9UKB5 411 aaPredicted RBP11.31□□□□□ -0.6
PTPRF-203ENST00000372407 FZD10Q9ULW2 581 aa11.31□□□□□ -0.6
PTPRF-203ENST00000372407 GRIN2DO15399 1336 aa11.3□□□□□ -0.6
PTPRF-203ENST00000372407 PSIP1O75475 530 aaKnown RBP11.3□□□□□ -0.6
PTPRF-203ENST00000372407 CCNKO75909 580 aa11.3□□□□□ -0.6
PTPRF-203ENST00000372407 SEPHS1P49903 392 aa11.3□□□□□ -0.6
PTPRF-203ENST00000372407 GTF2H2Q13888 395 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms