RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 PDE1BQ01064 536 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 NHLH1Q02575 133 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 SLMAPQ14BN4 828 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 CLCA4Q14CN2 919 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 SEPT7Q16181 437 aaKnown RBP3.96□□□□□ -1.78
LIG4-201ENST00000356922 GPR33Q49SQ1 333 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 PRRT3Q5FWE3 981 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 EMBQ6PCB8 327 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 PAQR3Q6TCH7 311 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 CDHR3Q6ZTQ4 885 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 TRMT10CQ7L0Y3 403 aaKnown RBP3.96□□□□□ -1.78
LIG4-201ENST00000356922 NLRP9Q7RTR0 991 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 LRRC6Q86X45 466 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 DTX3LQ8TDB6 740 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 SLC44A1Q8WWI5 657 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 TTC25Q96NG3 672 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 CAMK1GQ96NX5 476 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 NAT9Q9BTE0 207 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 LRRC61Q9BV99 259 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 PHACTR1Q9C0D0 580 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 DNAJC28Q9NX36 388 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 DMTF1Q9Y222 760 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 KNTC1P50748 2209 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 ZFC3H1O60293 1989 aaKnown RBP3.96□□□□□ -1.78
LIG4-201ENST00000356922 TLDC2A0PJX2 215 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 A6NNZ2 444 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 AP3B1O00203 1094 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 GRID2O43424 1007 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 RFPL1O75677 317 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 WISP3O95389 354 aaPredicted RBP3.96□□□□□ -1.78
LIG4-201ENST00000356922 CSF2P04141 144 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 ITGALP20701 1170 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 PMLP29590 882 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 AKT1P31749 480 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 CNR2P34972 360 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 NBL1P41271 181 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 YBX1P67809 324 aaKnown RBP3.96□□□□□ -1.78
LIG4-201ENST00000356922 THOC5Q13769 683 aaKnown RBP3.96□□□□□ -1.78
LIG4-201ENST00000356922 MPP2Q14168 576 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 CASP8Q14790 479 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 ACSBG2Q5FVE4 666 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 FBXO48Q5FWF7 155 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 DUS1LQ6P1R4 473 aaKnown RBP3.96□□□□□ -1.78
LIG4-201ENST00000356922 SLC30A9Q6PML9 568 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 CYHR1Q6ZMK1 362 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 KANSL1Q7Z3B3 1105 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 TRAPPC5Q8IUR0 188 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 CFAP206Q8IYR0 622 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 MREGQ8N565 214 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 PHC3Q8NDX5 983 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 DENND6BQ8NEG7 585 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 EEF1AKMT1Q8WVE0 214 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 HNRNPLLQ8WVV9 542 aaKnown RBP3.96□□□□□ -1.78
LIG4-201ENST00000356922 ANKRD7Q92527 254 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 ARL8AQ96BM9 186 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 VPS39Q96JC1 886 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 GPR21Q99679 349 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 FOXP3Q9BZS1 431 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 SARS2Q9NP81 518 aaKnown RBP3.96□□□□□ -1.78
LIG4-201ENST00000356922 ACSS2Q9NR19 701 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 GPSM3Q9Y4H4 160 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 UNC13CQ8NB66 2214 aa3.96□□□□□ -1.78
LIG4-201ENST00000356922 VGLL3A8MV65 326 aa3.95□□□□□ -1.78
LIG4-201ENST00000356922 PRMT5O14744 637 aaPredicted RBP3.95□□□□□ -1.78
LIG4-201ENST00000356922 YY2O15391 372 aa3.95□□□□□ -1.78
LIG4-201ENST00000356922 NDUFS3O75489 264 aa3.95□□□□□ -1.78
LIG4-201ENST00000356922 ITGA2BP08514 1039 aa3.95□□□□□ -1.78
LIG4-201ENST00000356922 JUNDP17535 347 aa3.95□□□□□ -1.78
LIG4-201ENST00000356922 ENGP17813 658 aa3.95□□□□□ -1.78
LIG4-201ENST00000356922 DGKAP23743 735 aa3.95□□□□□ -1.78
LIG4-201ENST00000356922 ATXN3P54252 364 aaPredicted RBP3.95□□□□□ -1.78
LIG4-201ENST00000356922 PTPN5P54829 565 aa3.95□□□□□ -1.78
LIG4-201ENST00000356922 HSPA14Q0VDF9 509 aa3.95□□□□□ -1.78
LIG4-201ENST00000356922 ITGA9Q13797 1035 aa3.95□□□□□ -1.78
LIG4-201ENST00000356922 FRG1Q14331 258 aaKnown RBP3.95□□□□□ -1.78
LIG4-201ENST00000356922 SPDYCQ5MJ68 293 aa3.95□□□□□ -1.78
LIG4-201ENST00000356922 SLC23A3Q6PIS1 610 aa3.95□□□□□ -1.78
LIG4-201ENST00000356922 ADGRD1Q6QNK2 874 aa3.95□□□□□ -1.78
LIG4-201ENST00000356922 ZNF761Q86XN6 746 aaPredicted RBP3.95□□□□□ -1.78
LIG4-201ENST00000356922 PHYKPLQ8IUZ5 450 aa3.95□□□□□ -1.78
LIG4-201ENST00000356922 CCNJLQ8IV13 435 aa3.95□□□□□ -1.78
LIG4-201ENST00000356922 TMEM151AQ8N4L1 468 aa3.95□□□□□ -1.78
LIG4-201ENST00000356922 GPATCH11Q8N954 259 aa3.95□□□□□ -1.78
LIG4-201ENST00000356922 CD200R1Q8TD46 325 aa3.95□□□□□ -1.78
LIG4-201ENST00000356922 JPH3Q8WXH2 748 aaPredicted RBP3.95□□□□□ -1.78
LIG4-201ENST00000356922 SRPK1Q96SB4 655 aaKnown RBP3.95□□□□□ -1.78
LIG4-201ENST00000356922 RBBP8Q99708 897 aa3.95□□□□□ -1.78
LIG4-201ENST00000356922 C19orf43Q9BQ61 176 aa3.95□□□□□ -1.78
LIG4-201ENST00000356922 GAREM1Q9H706 876 aa3.95□□□□□ -1.78
LIG4-201ENST00000356922 KLC4Q9NSK0 619 aa3.95□□□□□ -1.78
LIG4-201ENST00000356922 SLC39A10Q9ULF5 831 aa3.95□□□□□ -1.78
LIG4-201ENST00000356922 VWA7Q9Y334 891 aa3.95□□□□□ -1.78
LIG4-201ENST00000356922 A0A1B0GTW7 788 aa3.95□□□□□ -1.78
LIG4-201ENST00000356922 EXOC1LA0A1B0GW35 172 aa3.95□□□□□ -1.78
LIG4-201ENST00000356922 A6NCN8 305 aa3.95□□□□□ -1.78
LIG4-201ENST00000356922 TRIM38O00635 465 aa3.95□□□□□ -1.78
LIG4-201ENST00000356922 GPC4O75487 556 aa3.95□□□□□ -1.78
LIG4-201ENST00000356922 RASGRP1O95267 797 aa3.95□□□□□ -1.78
LIG4-201ENST00000356922 NUDT17P0C025 328 aa3.95□□□□□ -1.78
LIG4-201ENST00000356922 SBK3P0C264 359 aa3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms