RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 OXTRP30559 389 aa21.5■■□□□ 1.03
SHMT1-202ENST00000352886 GSK3BP49841 420 aa21.5■■□□□ 1.03
SHMT1-202ENST00000352886 AP1S1P61966 158 aa21.5■■□□□ 1.03
SHMT1-202ENST00000352886 APOFQ13790 326 aa21.5■■□□□ 1.03
SHMT1-202ENST00000352886 ADAMTSL2Q86TH1 951 aa21.5■■□□□ 1.03
SHMT1-202ENST00000352886 SERPINA9Q86WD7 417 aa21.5■■□□□ 1.03
SHMT1-202ENST00000352886 CARM1Q86X55 608 aa21.5■■□□□ 1.03
SHMT1-202ENST00000352886 APCDD1Q8J025 514 aa21.5■■□□□ 1.03
SHMT1-202ENST00000352886 DCAF4L2Q8NA75 395 aa21.5■■□□□ 1.03
SHMT1-202ENST00000352886 METTL6Q8TCB7 284 aa21.5■■□□□ 1.03
SHMT1-202ENST00000352886 DIS3LQ8TF46 1054 aaKnown RBP21.5■■□□□ 1.03
SHMT1-202ENST00000352886 SEZ6LQ9BYH1 1024 aa21.5■■□□□ 1.03
SHMT1-202ENST00000352886 ETAA1Q9NY74 926 aa21.5■■□□□ 1.03
SHMT1-202ENST00000352886 SLC4A7Q9Y6M7 1214 aa21.5■■□□□ 1.03
SHMT1-202ENST00000352886 FAM149AA5PLN7 773 aa21.49■■□□□ 1.03
SHMT1-202ENST00000352886 GREM1O60565 184 aa21.49■■□□□ 1.03
SHMT1-202ENST00000352886 LATS1O95835 1130 aa21.49■■□□□ 1.03
SHMT1-202ENST00000352886 MYCP01106 439 aaPredicted RBP21.49■■□□□ 1.03
SHMT1-202ENST00000352886 MTHFD1P11586 935 aaKnown RBP21.49■■□□□ 1.03
SHMT1-202ENST00000352886 UGT1A6P19224 532 aa21.49■■□□□ 1.03
SHMT1-202ENST00000352886 IL10P22301 178 aa21.49■■□□□ 1.03
SHMT1-202ENST00000352886 CA5AP35218 305 aa21.49■■□□□ 1.03
SHMT1-202ENST00000352886 HTR6P50406 440 aa21.49■■□□□ 1.03
SHMT1-202ENST00000352886 CREB5Q02930 508 aa21.49■■□□□ 1.03
SHMT1-202ENST00000352886 PCBP2Q15366 365 aaKnown RBP eCLIP21.49■■□□□ 1.03
SHMT1-202ENST00000352886 HABP4Q5JVS0 413 aaKnown RBP21.49■■□□□ 1.03
SHMT1-202ENST00000352886 PPP4R4Q6NUP7 873 aa21.49■■□□□ 1.03
SHMT1-202ENST00000352886 IL27RAQ6UWB1 636 aa21.49■■□□□ 1.03
SHMT1-202ENST00000352886 GOLGA7Q7Z5G4 137 aa21.49■■□□□ 1.03
SHMT1-202ENST00000352886 KIAA2013Q8IYS2 634 aa21.49■■□□□ 1.03
SHMT1-202ENST00000352886 PAF1Q8N7H5 531 aa21.49■■□□□ 1.03
SHMT1-202ENST00000352886 PROKR1Q8TCW9 393 aa21.49■■□□□ 1.03
SHMT1-202ENST00000352886 ZIM2Q9NZV7 527 aa21.49■■□□□ 1.03
SHMT1-202ENST00000352886 DNMT3BQ9UBC3 853 aaKnown RBP21.49■■□□□ 1.03
SHMT1-202ENST00000352886 EVLQ9UI08 416 aaPredicted RBP21.49■■□□□ 1.03
SHMT1-202ENST00000352886 OBSL1O75147 1896 aa21.49■■□□□ 1.03
SHMT1-202ENST00000352886 A0A1B0GTW7 788 aa21.49■■□□□ 1.03
SHMT1-202ENST00000352886 GOLGA8CPA6NN73 597 aa21.49■■□□□ 1.03
SHMT1-202ENST00000352886 GAPDHSO14556 408 aaPredicted RBP21.49■■□□□ 1.03
SHMT1-202ENST00000352886 SMAD6O43541 496 aaKnown RBP21.49■■□□□ 1.03
SHMT1-202ENST00000352886 ZNF7P17097 686 aaPredicted RBP21.49■■□□□ 1.03
SHMT1-202ENST00000352886 SOX11P35716 441 aa21.49■■□□□ 1.03
SHMT1-202ENST00000352886 LIPEQ05469 1076 aa21.49■■□□□ 1.03
SHMT1-202ENST00000352886 SLC5A9Q2M3M2 681 aa21.49■■□□□ 1.03
SHMT1-202ENST00000352886 SPATS1Q496A3 300 aa21.49■■□□□ 1.03
SHMT1-202ENST00000352886 TXNDC8Q6A555 127 aa21.49■■□□□ 1.03
SHMT1-202ENST00000352886 RBM44Q6ZP01 1051 aaKnown RBP21.49■■□□□ 1.03
SHMT1-202ENST00000352886 SFRP1Q8N474 314 aa21.49■■□□□ 1.03
SHMT1-202ENST00000352886 DGCR14Q96DF8 476 aaKnown RBP21.49■■□□□ 1.03
SHMT1-202ENST00000352886 TMEM74Q96NL1 305 aa21.49■■□□□ 1.03
SHMT1-202ENST00000352886 KCTD14Q9BQ13 255 aaPredicted RBP21.49■■□□□ 1.03
SHMT1-202ENST00000352886 ZFYVE1Q9HBF4 777 aa21.49■■□□□ 1.03
SHMT1-202ENST00000352886 ZNF334Q9HCZ1 680 aaPredicted RBP21.49■■□□□ 1.03
SHMT1-202ENST00000352886 TNPO3Q9Y5L0 923 aaKnown RBP21.49■■□□□ 1.03
SHMT1-202ENST00000352886 SCN8AQ9UQD0 1980 aa21.49■■□□□ 1.03
SHMT1-202ENST00000352886 PIKFYVEQ9Y2I7 2098 aa21.48■■□□□ 1.03
SHMT1-202ENST00000352886 C1orf232A0A0U1RR37 186 aa21.48■■□□□ 1.03
SHMT1-202ENST00000352886 OR7A17O14581 309 aa21.48■■□□□ 1.03
SHMT1-202ENST00000352886 FFAR2O15552 330 aa21.48■■□□□ 1.03
SHMT1-202ENST00000352886 FAM43BQ6ZT52 329 aaPredicted RBP21.48■■□□□ 1.03
SHMT1-202ENST00000352886 ADGRG5Q8IZF4 528 aa21.48■■□□□ 1.03
SHMT1-202ENST00000352886 OR4F6Q8NGB9 312 aa21.48■■□□□ 1.03
SHMT1-202ENST00000352886 ASB8Q9H765 288 aa21.48■■□□□ 1.03
SHMT1-202ENST00000352886 AGPAT4Q9NRZ5 378 aa21.48■■□□□ 1.03
SHMT1-202ENST00000352886 INTS7Q9NVH2 962 aaKnown RBP21.48■■□□□ 1.03
SHMT1-202ENST00000352886 DUS2Q9NX74 493 aaKnown RBP21.48■■□□□ 1.03
SHMT1-202ENST00000352886 CPQQ9Y646 472 aa21.48■■□□□ 1.03
SHMT1-202ENST00000352886 FAM234BA2RU67 622 aa21.48■■□□□ 1.03
SHMT1-202ENST00000352886 KATNA1O75449 491 aa21.48■■□□□ 1.03
SHMT1-202ENST00000352886 GNRH1P01148 92 aa21.48■■□□□ 1.03
SHMT1-202ENST00000352886 S100BP04271 92 aaPredicted RBP21.48■■□□□ 1.03
SHMT1-202ENST00000352886 GKP32189 559 aa21.48■■□□□ 1.03
SHMT1-202ENST00000352886 ATN1P54259 1190 aaPredicted RBP21.48■■□□□ 1.03
SHMT1-202ENST00000352886 GTF2H2Q13888 395 aa21.48■■□□□ 1.03
SHMT1-202ENST00000352886 GTF2H2CQ6P1K8 395 aa21.48■■□□□ 1.03
SHMT1-202ENST00000352886 CLDN19Q8N6F1 224 aa21.48■■□□□ 1.03
SHMT1-202ENST00000352886 GOLM1Q8NBJ4 401 aa21.48■■□□□ 1.03
SHMT1-202ENST00000352886 LKAAEAR1Q8TD35 194 aa21.48■■□□□ 1.03
SHMT1-202ENST00000352886 NMD3Q96D46 503 aaKnown RBP21.48■■□□□ 1.03
SHMT1-202ENST00000352886 NSUN3Q9H649 340 aaKnown RBP21.48■■□□□ 1.03
SHMT1-202ENST00000352886 ST14Q9Y5Y6 855 aa21.48■■□□□ 1.03
SHMT1-202ENST00000352886 ARHGAP10A1A4S6 786 aa21.47■■□□□ 1.03
SHMT1-202ENST00000352886 INPP4BO15327 924 aa21.47■■□□□ 1.03
SHMT1-202ENST00000352886 GUCA1CO95843 209 aa21.47■■□□□ 1.03
SHMT1-202ENST00000352886 CNPP09543 421 aaKnown RBP21.47■■□□□ 1.03
SHMT1-202ENST00000352886 NCK1P16333 377 aa21.47■■□□□ 1.03
SHMT1-202ENST00000352886 NELFEP18615 380 aaKnown RBP21.47■■□□□ 1.03
SHMT1-202ENST00000352886 FASP25445 335 aa21.47■■□□□ 1.03
SHMT1-202ENST00000352886 CYP51A1Q16850 503 aa21.47■■□□□ 1.03
SHMT1-202ENST00000352886 NHSL2Q5HYW2 709 aa21.47■■□□□ 1.03
SHMT1-202ENST00000352886 KRT80Q6KB66 452 aa21.47■■□□□ 1.03
SHMT1-202ENST00000352886 AUTS2Q8WXX7 1259 aa21.47■■□□□ 1.03
SHMT1-202ENST00000352886 TMEM169Q96HH4 297 aa21.47■■□□□ 1.03
SHMT1-202ENST00000352886 C2orf49Q9BVC5 232 aaPredicted RBP21.47■■□□□ 1.03
SHMT1-202ENST00000352886 CFHR5Q9BXR6 569 aa21.47■■□□□ 1.03
SHMT1-202ENST00000352886 GNPTGQ9UJJ9 305 aa21.47■■□□□ 1.03
SHMT1-202ENST00000352886 GFRA2O00451 464 aa21.47■■□□□ 1.03
SHMT1-202ENST00000352886 RAD51BO15315 384 aa21.47■■□□□ 1.03
SHMT1-202ENST00000352886 EPHB3P54753 998 aa21.47■■□□□ 1.03
SHMT1-202ENST00000352886 BCL2L1Q07817 233 aa21.47■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms