RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 ARSDP51689 593 aa13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 TKTL1P51854 596 aa13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 POLR2JP52435 117 aaKnown RBP13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 PPP2R2BQ00005 443 aa13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 RCAN2Q14206 197 aa13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 METTL7BQ6UX53 244 aa13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 GDPD3Q7L5L3 318 aa13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 DEPDC4Q8N2C3 294 aa13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 TMEM199Q8N511 208 aa13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 BEND7Q8N7W2 519 aaPredicted RBP13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 OR2T11Q8NH01 316 aa13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 CNGB3Q9NQW8 809 aa13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 CCRL2O00421 344 aa13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 ENPP3O14638 875 aa13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 RGS13O14921 159 aa13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 TEX28O15482 410 aa13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 CRCPO75575 148 aa13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 SLC22A3O75751 556 aa13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 PGLSO95336 258 aa13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 MYL3P08590 195 aa13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 DBTP11182 482 aaKnown RBP13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 PRKCAP17252 672 aa13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 HTR1EP28566 365 aa13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 MAP3K7CLP57077 242 aa13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 GALNT1Q10472 559 aaPredicted RBP13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 SEMA3BQ13214 749 aa13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 FAM98BQ52LJ0 330 aaKnown RBP13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 GJC2Q5T442 439 aaPredicted RBP13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 C9orf131Q5VYM1 1079 aa13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 B3GNT8Q7Z7M8 397 aa13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 METTL4Q8N3J2 472 aa13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 PHF10Q8WUB8 498 aaKnown RBP13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 NT5C3BQ969T7 300 aa13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 ZHX1-C8orf76Q96EF9 292 aa13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 L3HYPDHQ96EM0 354 aa13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 FSD1LQ9BXM9 530 aa13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 SLC7A5P2Q9GIP4 190 aa13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 PLEKHA5Q9HAU0 1116 aa13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 AASDHPPTQ9NRN7 309 aa13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 KLK14Q9P0G3 267 aa13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 OPTCQ9UBM4 332 aa13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 AGO1Q9UL18 857 aaKnown RBP13.3□□□□□ -0.28
CCDC88C-201ENST00000331194 DAB1O75553 588 aa13.29□□□□□ -0.28
CCDC88C-201ENST00000331194 GGT5P36269 586 aa13.29□□□□□ -0.28
CCDC88C-201ENST00000331194 CLCNKBP51801 687 aa13.29□□□□□ -0.28
CCDC88C-201ENST00000331194 EMX2Q04743 252 aa13.29□□□□□ -0.28
CCDC88C-201ENST00000331194 LYPD8Q6UX82 237 aa13.29□□□□□ -0.28
CCDC88C-201ENST00000331194 MTMR14Q8NCE2 650 aa13.29□□□□□ -0.28
CCDC88C-201ENST00000331194 REXO4Q9GZR2 422 aaKnown RBP13.29□□□□□ -0.28
CCDC88C-201ENST00000331194 NECTIN3Q9NQS3 549 aa13.29□□□□□ -0.28
CCDC88C-201ENST00000331194 NDFIP2Q9NV92 336 aa13.29□□□□□ -0.28
CCDC88C-201ENST00000331194 PCDHB14Q9Y5E9 798 aa13.29□□□□□ -0.28
CCDC88C-201ENST00000331194 NUP214P35658 2090 aaPredicted RBP13.29□□□□□ -0.28
CCDC88C-201ENST00000331194 KRT8P05787 483 aa13.29□□□□□ -0.28
CCDC88C-201ENST00000331194 MTHFD2P13995 350 aa13.29□□□□□ -0.28
CCDC88C-201ENST00000331194 DNAJB1P25685 340 aa13.29□□□□□ -0.28
CCDC88C-201ENST00000331194 EPHA2P29317 976 aa13.29□□□□□ -0.28
CCDC88C-201ENST00000331194 EEFSECP57772 596 aaKnown RBP13.29□□□□□ -0.28
CCDC88C-201ENST00000331194 GABARAPL2P60520 117 aa13.29□□□□□ -0.28
CCDC88C-201ENST00000331194 TNFAIP2Q03169 654 aa13.29□□□□□ -0.28
CCDC88C-201ENST00000331194 NXNL2Q5VZ03 156 aa13.29□□□□□ -0.28
CCDC88C-201ENST00000331194 KANK2Q63ZY3 851 aa13.29□□□□□ -0.28
CCDC88C-201ENST00000331194 CES5AQ6NT32 575 aa13.29□□□□□ -0.28
CCDC88C-201ENST00000331194 DPF3Q92784 378 aa13.29□□□□□ -0.28
CCDC88C-201ENST00000331194 LRRC3Q9BY71 257 aa13.29□□□□□ -0.28
CCDC88C-201ENST00000331194 TKTL2Q9H0I9 626 aa13.29□□□□□ -0.28
CCDC88C-201ENST00000331194 SP140LQ9H930 580 aa13.29□□□□□ -0.28
CCDC88C-201ENST00000331194 ELP3Q9H9T3 547 aa13.29□□□□□ -0.28
CCDC88C-201ENST00000331194 EEDO75530 441 aaKnown RBP13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 ANXA6P08133 673 aa13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 CD36P16671 472 aa13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 AKAP5P24588 427 aa13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 ACVR2AP27037 513 aa13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 FMO4P31512 558 aa13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 AGTR2P50052 363 aa13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 NRG1Q02297 640 aaPredicted RBP13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 ZNF691Q5VV52 312 aa13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 GPRIN1Q7Z2K8 1008 aa13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 PROSER1Q86XN7 944 aa13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 FAM167AQ96KS9 214 aa13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 SPATA33Q96N06 139 aa13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 TRMOQ9BU70 441 aa13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 ULBP1Q9BZM6 244 aa13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 DCSTAMPQ9H295 470 aa13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 MOV10Q9HCE1 1003 aaKnown RBP13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 RASSF1Q9NS23 344 aa13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 CACNG4Q9UBN1 327 aa13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 STAP1Q9ULZ2 295 aa13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 EFCAB9A8MZ26 197 aa13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 PRKD3O94806 890 aa13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 PGK2P07205 417 aa13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 USP17L7P0C7H9 530 aa13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 MRPS15P82914 257 aaKnown RBP13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 YWHAHQ04917 246 aaPredicted RBP13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 FOXM1Q08050 763 aa13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 ATAD3CQ5T2N8 411 aa13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 DLEU7Q6UYE1 221 aa13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 FKBP9P1Q75LS8 142 aa13.28□□□□□ -0.28
CCDC88C-201ENST00000331194 PROKR1Q8TCW9 393 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 89.5 ms