RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 ANXA6P08133 673 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 SMIM18P0DKX4 95 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 CHRM3P20309 590 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 GSTM2P28161 218 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 SLC5A2P31639 672 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 ETV5P41161 510 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 UBAP2LQ14157 1087 aaKnown RBP6.35□□□□□ -1.39
VPS35-201ENST00000299138 ZBTB6Q15916 424 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 SLC25A52Q3SY17 297 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 MGAT5BQ3V5L5 792 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 UGT3A1Q6NUS8 523 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 MAMDC4Q6UXC1 1216 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 CHSY3Q70JA7 882 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 ZDHHC13Q8IUH4 622 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 TAAR1Q96RJ0 339 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 RANBP9Q96S59 729 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 RBM4BQ9BQ04 359 aaKnown RBP6.35□□□□□ -1.39
VPS35-201ENST00000299138 PI4K2AQ9BTU6 479 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 RBM4Q9BWF3 364 aaKnown RBP6.35□□□□□ -1.39
VPS35-201ENST00000299138 MED11Q9P086 117 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 MYH10P35580 1976 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 LOC102724200A0A096LPH7 203 aaPredicted RBP6.35□□□□□ -1.39
VPS35-201ENST00000299138 TTLL8A6PVC2 850 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 E9PAM4 449 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 WWP2O00308 870 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 IPO13O94829 963 aaKnown RBP6.35□□□□□ -1.39
VPS35-201ENST00000299138 PTTG1O95997 202 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 IFNA6P05013 189 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 HMBSP08397 361 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 GRIA4P48058 902 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 THOP1P52888 689 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 MRPS5P82675 430 aaKnown RBP6.35□□□□□ -1.39
VPS35-201ENST00000299138 CD83Q01151 205 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 MED22Q15528 200 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 VMACQ2NL98 169 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 PITRM1Q5JRX3 1037 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 CXXC5Q7LFL8 322 aaKnown RBP6.35□□□□□ -1.39
VPS35-201ENST00000299138 SPRED1Q7Z699 444 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 APOBEC3FQ8IUX4 373 aaKnown RBP6.35□□□□□ -1.39
VPS35-201ENST00000299138 FIBCD1Q8N539 461 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 POU5F2Q8N7G0 328 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 AP3S1Q92572 193 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 TAMM41Q96BW9 452 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 ISOC1Q96CN7 298 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 PPP1R10Q96QC0 940 aaKnown RBP6.35□□□□□ -1.39
VPS35-201ENST00000299138 C7orf50Q9BRJ6 194 aaKnown RBP6.35□□□□□ -1.39
VPS35-201ENST00000299138 TRAF4Q9BUZ4 470 aaPredicted RBP6.35□□□□□ -1.39
VPS35-201ENST00000299138 TPK1Q9H3S4 243 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 MEAF6Q9HAF1 191 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 MARK1Q9P0L2 795 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 TMEM216Q9P0N5 145 aa6.35□□□□□ -1.39
VPS35-201ENST00000299138 COL24A1Q17RW2 1714 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 PCSK1P29120 753 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 TUBP50607 506 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 BAATQ14032 418 aaPredicted RBP6.34□□□□□ -1.39
VPS35-201ENST00000299138 HERC6Q8IVU3 1022 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 C10orf107Q8IVU9 208 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 TMEM102Q8N9M5 508 aaPredicted RBP6.34□□□□□ -1.39
VPS35-201ENST00000299138 SETD6Q8TBK2 473 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 CLEC4DQ8WXI8 215 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 DNAJC1Q96KC8 554 aaKnown RBP6.34□□□□□ -1.39
VPS35-201ENST00000299138 CSPG4P5Q96PW8 444 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 SNX18Q96RF0 628 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 MROQ9BYG7 248 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 MMP27Q9H306 513 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 TM9SF3Q9HD45 589 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 LRFN2Q9ULH4 789 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 SSR3Q9UNL2 185 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 CBY3A6NI87 242 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 PGRMC2O15173 223 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 ZNF26P17031 533 aaPredicted RBP6.34□□□□□ -1.39
VPS35-201ENST00000299138 ASPAP45381 313 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 NFKB2Q00653 900 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 OXR1Q8N573 874 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 TOP6BLQ8N6T0 577 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 PIDD1Q9HB75 910 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 STUB1Q9UNE7 303 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 PCDHAC2Q9Y5I4 1007 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 ZNF705FA8MVS1 300 aaPredicted RBP6.34□□□□□ -1.39
VPS35-201ENST00000299138 H0Y858 1186 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 OIP5O43482 229 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 PRKD3O94806 890 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 BPNT1O95861 308 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 IFNA7P01567 189 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 FGF4P08620 206 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 ZNF705DP0CH99 300 aaPredicted RBP6.34□□□□□ -1.39
VPS35-201ENST00000299138 ZNF705BP0CI00 300 aaPredicted RBP6.34□□□□□ -1.39
VPS35-201ENST00000299138 CDH1P12830 882 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 AZGP1P25311 298 aaKnown RBP6.34□□□□□ -1.39
VPS35-201ENST00000299138 DDX6P26196 483 aaKnown RBP eCLIP6.34□□□□□ -1.395e-8■■■■□ 23.4
VPS35-201ENST00000299138 FAUP35544 74 aaKnown RBP6.34□□□□□ -1.39
VPS35-201ENST00000299138 ZNF33BQ06732 778 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 MSS51Q4VC12 460 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 PRSS48Q7RTY5 328 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 TOR1AIP2Q8NFQ8 470 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 TMCO6Q96DC7 493 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 PSD2Q9BQI7 771 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 TMED9Q9BVK6 235 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 GBA3Q9H227 469 aa6.34□□□□□ -1.39
VPS35-201ENST00000299138 WDR6Q9NNW5 1121 aaKnown RBP6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms